AffyidToGeneAnnotationnoGOIDandPepstats.xml

Created: 2008-07-12 21:14:58 Last updated: 2008-07-12 21:16:01

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Inputs (0)

Processors (12)

Name	Type	Description
ProbeSetId	stringconstant
DatabaseId1	stringconstant
DatabaseId2	stringconstant
GetMeldineIds	arbitrarywsdl
GetSwissprotRecord	arbitrarywsdl
getDotFromViz	arbitrarywsdl
destroyVizSession	arbitrarywsdl
GetEmblAccNumber	arbitrarywsdl
createVizSession	arbitrarywsdl
GetSwissprotId	arbitrarywsdl
addTermToViz	arbitrarywsdl
getGoIds	arbitrarywsdl

Beanshells (0)

Outputs (4)

Name	Description
GoIds
goDiagram
medline
swissprot

Links (15)

Source	Sink
DatabaseId1:value	getGoIds:XRefDatabankId
DatabaseId2:value	GetMeldineIds:XRefDatabankId
GetEmblAccNumber:getAccessionNumberReturn	GetMeldineIds:usa
GetSwissprotId:getSwissProtIdReturn	GetSwissprotRecord:usa
GetMeldineIds:queryByXRefReturn	medline
GetSwissprotId:getSwissProtIdReturn	getGoIds:usa
GetSwissprotRecord:queryByIdReturn	swissprot
ProbeSetId:value	GetEmblAccNumber:probeSetId
ProbeSetId:value	GetSwissprotId:probeSetId
createVizSession:createSessionReturn	addTermToViz:sessionID
createVizSession:createSessionReturn	destroyVizSession:sessionID
createVizSession:createSessionReturn	getDotFromViz:sessionID
getGoIds:queryByXRefReturn	addTermToViz:geneOntologyID
getDotFromViz:getDotReturn	goDiagram
getGoIds:queryByXRefReturn	GoIds

Coordinations (2)

Controller	Target
addTermToViz	getDotFromViz
getDotFromViz	destroyVizSession

Information Workflow Type

Taverna 1

Information Uploader

Antoon Goderis

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Information Version 1 (of 1)

Information Credits (1)

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Peter Li

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Information Statistics

1492 viewings

1883 downloads

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Version History

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AffyidToGeneAnnotationnoGOIDandPepstats.xml

Created by Antoon Goderis on Saturday 12 July 2008 21:14:58 (UTC)

Last edited by Antoon Goderis on Saturday 12 July 2008 21:16:01 (UTC)

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An example of how a more complex workflow can federate multiple resources to perform data mining. In this case a single input data item in the form of a probe set identifier is cross referenced to data sets in multiple locations to answer a kind of 'show me everything about this data' question.

Created: 2008-07-12 | Last updated: 2008-07-12

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gene_ontology_diagram.xml (1)

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This workflow builds up a subgraph of the Gene Ontology (http://www.geneontology.org) to show the context for a supplied term or terms. It shows this context by colouring all ancestors of the term, all children and all siblings. By default, ancestors of the supplied term or terms are coloured orange, siblings purple and direct children teal. Other terms appear in the default wheat colour.

Created: 2008-07-12 | Last updated: 2008-07-12

Credits: Paul Fisher