blast_to_fasta.xml

Created: 2008-07-12 10:55:37 Last updated: 2008-07-12 10:55:52

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Inputs (0)

Processors (8)

Name	Type	Description
blastsimplifier	soaplabwsdl	Simplifies BLAST output for later use
blast_ddbj	arbitrarywsdl
gi_number	stringconstant
query_seq	stringconstant
database	stringconstant
program	stringconstant
GetFasta	seqhound	The FASTA format is widely used in bioinformatics community; it consists of a definition line, new line followed by a sequence terminated by a second new line.
MoleculeType	seqhound	determines the molecular type given a gi

Beanshells (0)

Outputs (3)

Name	Description
blast_simple
fasta_sequences
molecular_type

Links (10)

Source	Sink
GetFasta:result	fasta_sequences
MoleculeType:result	molecular_type
blast_ddbj:Result	blastsimplifier:new_direct_data
blastsimplifier:output	GetFasta:gi
blastsimplifier:output	MoleculeType:gi
database:value	blast_ddbj:database
gi_number:value	blastsimplifier:gi
program:value	blast_ddbj:program
query_seq:value	blast_ddbj:query
blastsimplifier:output	blast_simple

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Information Workflow Type

Taverna 1

Information Uploader

Antoon Goderis

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Paul Fisher

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Paul Fisher workflows for benchmarks PR and CA2

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Information Statistics

2071 viewings

1935 downloads

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blast_to_fasta.xml

Created by Antoon Goderis on Saturday 12 July 2008 10:55:37 (UTC)

Last edited by Antoon Goderis on Saturday 12 July 2008 10:55:52 (UTC)

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