metabolic.xml

Created: 2008-07-12 10:42:42 Last updated: 2008-07-12 10:42:56

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An example of how a more complex workflow can federate multiple resources to perform data mining. In this case a single input data item in the form of a probe set identifier is cross referenced to data sets in multiple locations to answer a kind of 'show me everything about this data' question.

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Workflow Components

Inputs (0)

Processors (18)

Name	Type	Description
DatabaseId1	stringconstant
childColour	stringconstant
getChildren	arbitrarywsdl
ProbeSetId	stringconstant
ancestorColour	stringconstant
inputTermColour	stringconstant
GetSwissprotId	arbitrarywsdl
finish	arbitrarywsdl
add	arbitrarywsdl
addImmediateChildren	arbitrarywsdl
getGoIds	arbitrarywsdl
getresults	arbitrarywsdl
colourChildren	arbitrarywsdl
markAncestors	arbitrarywsdl
getAncestry	arbitrarywsdl
colourInputTerm	arbitrarywsdl
getParents	arbitrarywsdl
create	arbitrarywsdl

Beanshells (0)

Outputs (2)

Name	Description
goDiagram
GOIds

Links (17)

Source	Sink
DatabaseId1:value	getGoIds:XRefDatabankId
GetSwissprotId:getSwissProtIdReturn	getGoIds:usa
ProbeSetId:value	GetSwissprotId:probeSetId
ancestorColour:value	markAncestors:colour
childColour:value	colourChildren:colour
create:createSessionReturn	add:sessionID
create:createSessionReturn	addImmediateChildren:sessionID
create:createSessionReturn	colourChildren:sessionID
create:createSessionReturn	colourInputTerm:sessionID
create:createSessionReturn	finish:sessionID
create:createSessionReturn	getresults:sessionID
create:createSessionReturn	markAncestors:sessionID
getAncestry:getAncestorsReturn	markAncestors:geneOntologyID
getChildren:getChildrenReturn	add:geneOntologyID
getGoIds:queryByXRefReturn	colourInputTerm:geneOntologyID
getGoIds:queryByXRefReturn	getAncestry:geneOntologyID
getGoIds:queryByXRefReturn	GOIds

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Information Workflow Type

Taverna 1

Information Uploader

Antoon Goderis

Information License

All versions of this Workflow are licensed under:

Information Version 1 (of 1)

Information Credits (1)

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Paul Fisher

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Information Featured In Packs (1)

Paul Fisher workflows for benchmarks PR and CA2

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Information Statistics

1953 viewings

2018 downloads

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Version History

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metabolic.xml

Created by Antoon Goderis on Saturday 12 July 2008 10:42:42 (UTC)

Last edited by Antoon Goderis on Saturday 12 July 2008 10:42:56 (UTC)

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AffyidToGeneAnnotationnoGOIDandPepstats.xml (1)

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No description

Created: 2008-07-12 | Last updated: 2008-07-12

Credits: Peter Li

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Uploader

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gene_ontology_diagram.xml (1)

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This workflow builds up a subgraph of the Gene Ontology (http://www.geneontology.org) to show the context for a supplied term or terms. It shows this context by colouring all ancestors of the term, all children and all siblings. By default, ancestors of the supplied term or terms are coloured orange, siblings purple and direct children teal. Other terms appear in the default wheat colour.

Created: 2008-07-12 | Last updated: 2008-07-12

Credits: Paul Fisher