protein_protein_interactions.xml

Created: 2008-07-12 10:27:05 Last updated: 2008-07-12 10:27:18

Download Workflow

No description has been set

Preview

Run

Run this Workflow in the Taverna Workbench...

Option 1:

Copy and paste this link into File > 'Open workflow location...'
http://myexperiment.org/workflows/310/download?version=1
[ More Info Expand ]

Workflow Components

Inputs (1)

Name	Description
ensembl_file

Processors (4)

Name	Type	Description
idSearch	arbitrarywsdl
lister	arbitrarywsdl
id_type	stringconstant
return_type	stringconstant

Beanshells (0)

Outputs (1)

Name	Description
protein_interactions

Links (5)

Source	Sink
ensembl_file	lister:file
idSearch:searchResultBean	protein_interactions
id_type:value	idSearch:idType
lister:listerReturn	idSearch:id
return_type:value	idSearch:returnType

Coordinations (0)

Information Workflow Type

Taverna 1

Information Uploader

Antoon Goderis

Information License

All versions of this Workflow are licensed under:

Information Version 1 (of 1)

Information Credits (1)

(People/Groups)

Paul Fisher

Information Attributions (0)

(Workflows/Files)

None

Information Tags (1)

Uploader tags

benchmarks

Log in to add Tags

Information Shared with Groups (0)

None

Information Featured In Packs (1)

Paul Fisher workflows for benchmarks PR and CA2

Log in to add to one of your Packs

Information Attributed By (0)

(Workflows/Files)

None

Information Favourited By (0)

No one

Information Statistics

1927 viewings

1909 downloads

[ see breakdown ]

Citations (0)

None

Version History

In chronological order:

protein_protein_interactions.xml

Created by Antoon Goderis on Saturday 12 July 2008 10:27:05 (UTC)

Last edited by Antoon Goderis on Saturday 12 July 2008 10:27:18 (UTC)

Reviews (0)

No reviews yet

Be the first to review!

Comments (0)

View Timeline

No comments yet

Log in to make a comment

Other workflows that use similar services (36)

Only the first 2 workflows that use similar services are shown. View all workflows that use these services.

Taverna 1

Uploader

Paul Fisher

HUMAN Microarray CEL file to candidate pat... (4)

Download

This workflow takes in a CEL file and a normalisation method then returns a series of images/graphs which represent the same output obtained using the MADAT software package (MicroArray Data Analysis Tool) [http://www.bioinf.manchester.ac.uk/MADAT/index.html]. Also returned by this workflow are a list of the top differentialy expressed genes (size dependant on the number specified as input - geneNumber), which are then used to find the candidate pathways which may be influencing the observed ...

Created: 2007-10-03 | Last updated: 2009-11-26

Taverna 1

Uploader

Paul Fisher

Cow-Human Ortholog Pathways and Gene annot... (2)

Download

This workflow searches for genes which reside in a QTL (Quantitative Trait Loci) region in the cow, Bos taurus. The workflow requires an input of: a chromosome name or number; a QTL start base pair position; QTL end base pair position. Data is then extracted from BioMart to annotate each of the genes found in this region. As the Cow genome is currently unfinished, the workflow subsequently maps the cow ensembl gene ids to human orthologues. Entrez and UniProt identifiers are then identified...

Created: 2007-10-03 | Last updated: 2009-12-03