Adjusting_galaxy_parFileVotablePath00 /home/julian/Documents/RO2ndGE/Files/workflow_results/votables/sextractor_result_run3.votable 2012-08-17 10:46:22.771 UTC galfitVocabulary00 image galfit galfit2nd galfitgal model psf nx ny xconvsize yconvsize zp x_image X_IMAGE y_image Y_IMAGE mag_auto MAG_AUTO flux_radius FLUX_RADIUS axes_rate rotated_theta theta x_2 y_2 mauto_2 flux_rad0_5_2_big flux_rad0_5_2_small flux_rad0_5_2_medium axes_rate_2 theta_2 sky_2 x_3 y_3 mauto_3 flux_rad0_5_3 axes_rate_3 theta_3 bar 2012-08-17 09:05:47.236 UTC galfitTemplateForAdjustCenter00 =============================================================================== # IMAGE and GALFIT CONTROL PARAMETERS A) $image$ # Input data image (FITS file) B) $model$ # Output data image block C) none # Sigma image name (made from data if blank or "none") D) $psf$ # Input PSF image and (optional) diffusion kernel E) 1 # PSF fine sampling factor relative to data F) none # Bad pixel mask (FITS image or ASCII coord list) G) none # File with parameter constraints (ASCII file) H) 1 $nx$ 1 $ny$ # Image region to fit (xmin xmax ymin ymax) I) $xconvsize$ $yconvsize$ # Size of the convolution box (x y) J) $zp$ # Magnitude photometric zeropoint K) 0.396 0.396 # Plate scale (dx dy) [arcsec per pixel] O) regular # Display type (regular, curses, both) P) 0 # Create ouput only? (1=yes; 0=optimize) S) 0 # Modify/create objects interactively? # Object number: 1 0) expdisk 1) $X_IMAGE$ $Y_IMAGE$ 1 1 3) $MAG_AUTO$ 1 4) $FLUX_RADIUS$ 1 5) 1.00000 0 6) 0.00000 0 7) 0.00000 0 8) 0.00000 0 9) $axes_rate$ 1 10) $rotated_theta$ 1 Z) 0 0) sky 1) 0.008000 1 3) 0.0000 0 4) 0.0000 0 Z) 0 2012-08-17 09:04:08.735 UTC ColumnNameWithGalfitConfigFile00 galfit 2012-07-23 08:47:58.983 UTC GalfitTemplateWithoutBar00 =============================================================================== # IMAGE and GALFIT CONTROL PARAMETERS A) $image$ # Input data image (FITS file) B) $model$ # Output data image block C) none # Sigma image name (made from data if blank or "none") D) $psf$ # Input PSF image and (optional) diffusion kernel E) 1 # PSF fine sampling factor relative to data F) none # Bad pixel mask (FITS image or ASCII coord list) G) none # File with parameter constraints (ASCII file) H) 1 $nx$ 1 $ny$ # Image region to fit (xmin xmax ymin ymax) I) $xconvsize$ $yconvsize$ # Size of the convolution box (x y) J) $zp$ # Magnitude photometric zeropoint K) 0.396 0.396 # Plate scale (dx dy) [arcsec per pixel] O) regular # Display type (regular, curses, both) P) 0 # Create ouput only? (1=yes; 0=optimize) S) 0 # Modify/create objects interactively? # INITIAL FITTING PARAMETERS # # For component type, the allowed functions are: # sersic, expdisk, edgedisk, devauc, king, nuker, psf, # gaussian, moffat, ferrer, and sky. # # Hidden parameters will only appear when they're specified: # Bn (n=integer, Bending Modes). # C0 (diskyness/boxyness), # Fn (n=integer, Azimuthal Fourier Modes). # R0-R10 (coordinate rotation, for creating spiral structures). # To, Ti, T0-T10 (truncation function). # # ------------------------------------------------------------------------------ # par) par value(s) fit toggle(s) # parameter description # ------------------------------------------------------------------------------ # Component number: 1 0) expdisk 1) $x_2$ $y_2$ 1 1 3) $mauto_2$ 1 4) $flux_rad0_5_2_big$ 1 5) 1.00000 0 6) 0.00000 0 7) 0.00000 0 8) 0.00000 0 9) $axes_rate$ 1 10) $rotated_theta$ 1 Z) 0 # Component number: 2 0) sersic 1) $x_2$ $y_2$ 1 1 3) $mauto_2$ 1 4) $flux_rad0_5_2_small$ 1 5) 0.50000 1 6) 0.00000 0 7) 0.00000 0 8) 0.00000 0 9) $axes_rate_2$ 1 10) $theta_2$ 1 Z) 0 # Component number: 3 0) sky # Component type 1) $sky_2$ 1 # Sky background at center of fitting region [ADUs] 2) 0.0000 0 # dsky/dx (sky gradient in x) [ADUs/pix] 3) 0.0000 0 # dsky/dy (sky gradient in y) [ADUs/pix] Z) 0 2012-08-17 09:05:58.163 UTC GalfitTemplateWithBar00 =============================================================================== # IMAGE and GALFIT CONTROL PARAMETERS A) $image$ # Input data image (FITS file) B) $model$ # Output data image block C) none # Sigma image name (made from data if blank or "none") D) $psf$ # Input PSF image and (optional) diffusion kernel E) 1 # PSF fine sampling factor relative to data F) none # Bad pixel mask (FITS image or ASCII coord list) G) none # File with parameter constraints (ASCII file) H) 1 $nx$ 1 $ny$ # Image region to fit (xmin xmax ymin ymax) I) $xconvsize$ $yconvsize$ # Size of the convolution box (x y) J) $zp$ # Magnitude photometric zeropoint K) 0.396 0.396 # Plate scale (dx dy) [arcsec per pixel] O) regular # Display type (regular, curses, both) P) 0 # Create ouput only? (1=yes; 0=optimize) S) 0 # Modify/create objects interactively? # INITIAL FITTING PARAMETERS # # For component type, the allowed functions are: # sersic, expdisk, edgedisk, devauc, king, nuker, psf, # gaussian, moffat, ferrer, and sky. # # Hidden parameters will only appear when they're specified: # Bn (n=integer, Bending Modes). # C0 (diskyness/boxyness), # Fn (n=integer, Azimuthal Fourier Modes). # R0-R10 (coordinate rotation, for creating spiral structures). # To, Ti, T0-T10 (truncation function). # # ------------------------------------------------------------------------------ # par) par value(s) fit toggle(s) # parameter description # ------------------------------------------------------------------------------ # Component number: 1 0) expdisk 1) $x_2$ $y_2$ 1 1 3) $mauto_2$ 1 4) $flux_rad0_5_2_big$ 1 5) 1.00000 0 6) 0.00000 0 7) 0.00000 0 8) 0.00000 0 9) $axes_rate$ 1 10) $rotated_theta$ 1 Z) 0 # Component number: 2 0) sersic 1) $x_2$ $y_2$ 1 1 3) $mauto_2$ 1 4) $flux_rad0_5_2_small$ 1 5) 0.50000 1 6) 0.00000 0 7) 0.00000 0 8) 0.00000 0 9) $axes_rate_2$ 1 10) $theta_2$ 1 Z) 0 # Component number: 3 0) sersic 1) $x_2$ $y_2$ 1 1 3) $mauto_2$ 1 4) $flux_rad0_5_2_medium$ 1 5) 1.50000 1 6) 0.00000 0 7) 0.00000 0 8) 0.00000 0 9) 0.25 1 10) $theta_2$ 1 Z) 0 # Component number: 4 0) sky # Component type 1) $sky_2$ 1 # Sky background at center of fitting region [ADUs] 2) 0.0000 0 # dsky/dx (sky gradient in x) [ADUs/pix] 3) 0.0000 0 # dsky/dy (sky gradient in y) [ADUs/pix] Z) 0 2012-08-17 09:06:07.216 UTC ColumnNameWith2ndConfigFile00 galfit2nd 2012-07-23 12:55:59.60 UTC Bar_partition_criteria00 bar == 1 2012-07-23 12:57:57.99 UTC NoBarPartitionCriteria00 bar == 0 2012-07-23 12:58:53.508 UTC ColumnNameForSecondGalfitIterationResult00 galfitgal 2012-07-24 07:03:20.454 UTC ColumnNameFor1stGalfitIteResult00 galfit_exp 2012-07-24 09:27:57.849 UTC Galfit2ndIterationResultGalfit1stIterationResultsvotableWithGalfitResultsResultGalfitFiles1stIterationResultGalfitFiles2ndIterationCreateGalfitTemplatesvotable0vocabulary0template0columnNameWithConfigFilePath0Template_filler_report00net.sf.taverna.t2.activitiesdataflow-activity1.4net.sf.taverna.t2.activities.dataflow.DataflowActivitynet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeRead_FilefilePath0string00net.sf.taverna.t2.activitiesbeanshell-activity1.4net.sf.taverna.t2.activities.beanshell.BeanshellActivity filePath 0 text/plain java.lang.String true string 0 0 workflow net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeFillVotableWithGalfitResultsFileVotablePath0ColumnNameWithConfigFile0Precedence0VotableWithnewColumns00net.sf.taverna.t2.activitiesdataflow-activity1.4net.sf.taverna.t2.activities.dataflow.DataflowActivitynet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeCreateGalfitTemplates_2nd_Iterationvocabulary0votable0template10template20columnNameWithConfigFile0partitioningFilter20PartitioningFilter10results00net.sf.taverna.t2.activitiesdataflow-activity1.4net.sf.taverna.t2.activities.dataflow.DataflowActivitynet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeRun_2nd_Galfit_iterationColumnNameWithConfigFile0ColumnNameWithNewConfigFile0votable0Precedence0Tool_STDOUT00ResultGalfitFiles11net.sf.taverna.t2.activitiesdataflow-activity1.4net.sf.taverna.t2.activities.dataflow.DataflowActivitynet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeRun_1st_galfit_iterationPrecedence0ColumnNameWithConfigFile0ColumnNameWithNewConfigFile0votable0Tool_STDOUT00ResultGalfitFiles11net.sf.taverna.t2.activitiesdataflow-activity1.4net.sf.taverna.t2.activities.dataflow.DataflowActivitynet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeFillVotableWith2ndGalfitResultsColumnNameWithConfigFile0votable0Precedence0VotableWithnewColumns00net.sf.taverna.t2.activitiesdataflow-activity1.4net.sf.taverna.t2.activities.dataflow.DataflowActivitynet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeCreateGalfitTemplatesvotableRead_FilestringCreateGalfitTemplatesvocabularygalfitVocabularyCreateGalfitTemplatestemplategalfitTemplateForAdjustCenterCreateGalfitTemplatescolumnNameWithConfigFilePathColumnNameWithGalfitConfigFileRead_FilefilePathFileVotablePathFillVotableWithGalfitResultsFileVotablePathFileVotablePathFillVotableWithGalfitResultsColumnNameWithConfigFileColumnNameFor1stGalfitIteResultFillVotableWithGalfitResultsPrecedenceRun_1st_galfit_iterationTool_STDOUTCreateGalfitTemplates_2nd_IterationvocabularygalfitVocabularyCreateGalfitTemplates_2nd_IterationvotableFillVotableWithGalfitResultsVotableWithnewColumnsCreateGalfitTemplates_2nd_Iterationtemplate1GalfitTemplateWithoutBarCreateGalfitTemplates_2nd_Iterationtemplate2GalfitTemplateWithBarCreateGalfitTemplates_2nd_IterationcolumnNameWithConfigFileColumnNameWith2ndConfigFileCreateGalfitTemplates_2nd_IterationpartitioningFilter2Bar_partition_criteriaCreateGalfitTemplates_2nd_IterationPartitioningFilter1NoBarPartitionCriteriaRun_2nd_Galfit_iterationColumnNameWithConfigFileColumnNameWith2ndConfigFileRun_2nd_Galfit_iterationColumnNameWithNewConfigFileColumnNameForSecondGalfitIterationResultRun_2nd_Galfit_iterationvotableFillVotableWithGalfitResultsVotableWithnewColumnsRun_2nd_Galfit_iterationPrecedenceCreateGalfitTemplates_2nd_IterationresultsRun_1st_galfit_iterationPrecedenceCreateGalfitTemplatesTemplate_filler_reportRun_1st_galfit_iterationColumnNameWithConfigFileColumnNameWithGalfitConfigFileRun_1st_galfit_iterationColumnNameWithNewConfigFileColumnNameFor1stGalfitIteResultRun_1st_galfit_iterationvotableRead_FilestringFillVotableWith2ndGalfitResultsColumnNameWithConfigFileColumnNameForSecondGalfitIterationResultFillVotableWith2ndGalfitResultsvotableFillVotableWithGalfitResultsVotableWithnewColumnsFillVotableWith2ndGalfitResultsPrecedenceRun_2nd_Galfit_iterationTool_STDOUTGalfit2ndIterationResultRun_2nd_Galfit_iterationTool_STDOUTGalfit1stIterationResultsRun_1st_galfit_iterationTool_STDOUTvotableWithGalfitResultsFillVotableWith2ndGalfitResultsVotableWithnewColumnsResultGalfitFiles1stIterationRun_1st_galfit_iterationResultGalfitFilesResultGalfitFiles2ndIterationRun_2nd_Galfit_iterationResultGalfitFiles 8ef31150-0fce-4583-9010-081837b928b6 2012-07-24 09:05:39.919 UTC 7575f02c-6530-4c32-95d4-4f03ba1b2c04 2012-08-01 06:41:06.665 UTC 1e18f01c-7060-485b-882a-c53ebe4c5f10 2012-07-24 10:04:04.239 UTC 492a7976-1b72-446f-8a1e-c1ed1ec5cc36 2012-07-23 08:48:30.886 UTC dd99b8d4-24fb-4a1e-8d21-0abef44f9d5b 2012-08-01 06:32:54.875 UTC d9310d79-57bf-46df-9359-4fbf58ecb3f5 2012-08-13 09:59:45.829 UTC Adjusting galaxy parameters using galfit 2012-08-13 09:59:44.290 UTC 8a7a4c60-ebec-4736-b6fc-a8a799d8ed31 2012-07-26 12:55:45.958 UTC dada8160-170c-442f-83dd-ffd862f24207 2012-07-23 11:12:33.707 UTC 40c944d3-01c5-484c-be1a-8968c0af8d53 2012-08-21 12:07:00.319 UTC a9e6a77f-1bff-4665-80de-32999861c78a 2012-08-17 09:06:26.68 UTC 9db5b91f-da82-4927-811e-70e513fde9cf 2012-07-30 11:24:26.569 UTC 159c4bb3-7793-4568-92e4-72b11044ec21 2012-07-23 11:35:24.543 UTC a1f6d61b-ea69-4348-a950-76f6d9c67791 2012-08-06 09:48:32.279 UTC 5366691c-dc1e-40f0-8586-8979fcbe5548 2012-07-23 12:59:31.437 UTC 2f6df423-935a-419b-8bef-e8f79428e25a 2012-07-23 08:41:50.184 UTC 67f66b1b-65ec-45f4-8bbd-58546ec8c65b 2012-07-23 12:52:17.926 UTC e4f26bb4-90c3-4985-9681-e4ef348bde5d 2012-07-23 11:31:41.631 UTC 103824c0-9147-4907-b24e-a87bff6c636d 2012-07-31 07:24:48.70 UTC 19bae2cb-9c63-4f06-ab18-573301f508b5 2012-08-06 10:02:34.193 UTC 3859d00b-1371-45cd-964e-f5e87742fc4b 2012-07-30 10:53:23.13 UTC c33891f4-3a5d-405f-9b15-5b00379a5ae8 2012-07-24 09:35:21.143 UTC 1f52e30b-1c4c-4eb0-96dc-1bf1aaf48118 2012-07-24 09:04:10.212 UTC This workflow creates galfit configuration files using data from a votable, it runs galfit, its results is added to the votable, it creates new config files for galfit using the previous results, it runs galfit a second time considering galaxies that have and do not have bars in order to adjust the objective parameters and it finally includes the results into the votable. It requires the specification of the columns that contain file names (these files should be accesibles from taverna). If the configuration files contain references to other files, they must be accesible from taverna. Configuration files are created (one for every row in the votable) using a template whose keys are replaced by data from a votable. Keys must appear also in the vocabulary file and match column names in the votable. It uses astrotaverna plugin (http://wf4ever.github.com/astrotaverna/) and it has a dependency on stil library (http://www.star.bris.ac.uk/~mbt/stil/). 2012-08-01 07:56:14.880 UTC 75f8fd33-47e8-4b10-822f-4b27e883136c 2012-07-23 08:50:44.50 UTC 447f024c-cb4e-432a-8ec3-2a25c6b51558 2012-07-23 11:10:05.949 UTC 88548955-8588-4ecd-85e2-c93ad748c44a 2012-07-23 11:25:35.91 UTC 149f8e18-0e59-4400-aad8-f2a5e13cb7d3 2012-07-23 08:50:28.812 UTC 6bbfae55-7c61-4172-8171-ecd40e472310 2012-07-30 10:52:31.783 UTC 094f510f-7182-497e-90bd-f070d177d9e2 2012-07-23 08:43:08.402 UTC 988a0a26-a05a-429c-aad0-89cd398ec4c4 2012-08-21 11:49:34.775 UTC 376f3876-97f4-4e78-9ebe-02de434afe32 2012-07-23 09:02:20.683 UTC 20064c6a-1e87-4893-979a-130eacdd35b0 2012-08-17 10:46:24.444 UTC 6acdb9ea-f203-404e-910c-e4c6874ca805 2012-08-01 07:56:18.785 UTC 772da343-bbd2-418f-96b4-628b1b1bb3e1 2012-07-24 07:06:52.771 UTC 22d35eed-2ef2-4e1d-9ff8-e887be73e3c0 2012-08-01 07:53:48.842 UTC 0e560193-f293-4714-a292-02ce2e11b171 2012-07-24 07:04:29.618 UTC 66c859ad-60e7-417f-8ca0-ed542ddaf5e6 2012-08-21 11:41:26.981 UTC 503bd8a4-dc3f-4980-9a31-e925952da96a 2012-08-21 11:46:14.7 UTC 63fd56b0-7e4f-417c-a9d4-6b85e1e2ae30 2012-07-24 09:29:55.726 UTC 6aede8c0-549b-4a58-9f79-6c393b501af3 2012-07-24 09:30:44.926 UTC 7c920033-0a9a-4f15-89d2-534144467d3e 2012-07-30 11:09:10.160 UTC 4f3815f8-5349-42b0-9e1e-cb0185fcbf45 2012-07-30 11:34:45.380 UTC 9ed0b80e-41a4-4d1c-9852-d63a423fe416 2012-09-07 12:57:21.355 UTC f1fac3c9-12f9-4a68-8493-14255e731376 2012-08-01 07:52:42.339 UTC 23380026-82a5-4908-a4c2-2a599669ca77 2012-07-30 11:27:52.691 UTC 00aebbc6-bd4c-482e-8e1a-869f74af851a 2012-08-01 08:28:09.251 UTC 9b4d3762-d6b1-4658-bd4d-d408b86ace5f 2012-08-01 08:16:05.998 UTC d6f51150-8198-4bdc-b5a6-46bd8e02e181 2012-07-23 11:17:17.979 UTC d11c7f02-2c50-4570-be30-182358441b6c 2012-08-01 08:46:35.24 UTC Julian Garrido 2012-08-13 09:59:41.735 UTC d26f7a9c-983b-4a15-b3f1-2fddf3834100 2012-07-23 08:39:04.650 UTC 7feb5b3a-c474-492c-b63c-fa0aa5273525 2012-07-24 10:04:51.701 UTC c4f65c55-4ae1-4abf-a4f6-4a0ca2bce5cf 2012-07-23 08:51:37.602 UTC 101a8830-2510-40d0-9fb1-770c30685448 2012-08-21 12:17:56.862 UTC 9e227aeb-7867-4808-861e-dc4e993ee813 2012-07-24 07:05:39.297 UTC 52815ff4-30ad-454f-a483-c42e092862c5 2012-07-24 07:17:16.887 UTC f51b3c83-7261-44e3-a132-c1fecb996687 2012-08-01 06:41:38.635 UTC 8f80ae52-d223-48c7-9cf2-cfb1af0b1b12 2012-08-01 08:09:55.945 UTC 3babd4f5-c450-4f8c-a2f9-744b201c95fb 2012-07-23 12:54:48.282 UTC 2c515d39-a408-4ff2-b92d-960e2255d6c9 2012-07-30 11:10:57.11 UTC 71aa8c80-7980-4d47-865e-8d5d330550db 2012-07-23 12:58:01.257 UTC 733a3a63-2194-4c30-83e7-a272d27075db 2012-07-23 11:29:21.718 UTC 4106947e-ef3f-4815-94de-7a492d108dd6 2012-07-30 11:18:44.622 UTC bd6648af-26be-4c13-8213-aa5cf1bc39e1 2012-07-26 12:53:33.210 UTC ae088059-c56f-40cd-8273-ed4e539de367 2012-07-23 08:27:22.234 UTC Workflow1votable00 2012-07-12 10:26:55.999 UTC vocabulary00 2012-07-12 10:26:45.416 UTC template00 2012-07-12 10:26:36.408 UTC columnNameWithConfigFilePath00 galfit 2012-07-02 08:23:14.393 UTC Check_template_filler_reportTemplate_filler_reportCheck_template_fillervoTable0vocabulary0template0report00org.purl.wf4ever.astrotavernastilts-activity0.9org.purl.wf4ever.astrotaverna.voutils.CheckTemplateFillerActivity String net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeTemplate_fillerColumnNameWithResultFileName0voTable0template0report00org.purl.wf4ever.astrotavernastilts-activity0.9org.purl.wf4ever.astrotaverna.voutils.TemplateFillerActivity String net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeCheck_template_fillervoTablevotableCheck_template_fillervocabularyvocabularyCheck_template_fillertemplatetemplateTemplate_fillerColumnNameWithResultFileNamecolumnNameWithConfigFilePathTemplate_fillervoTablevotableTemplate_fillertemplatetemplateCheck_template_filler_reportCheck_template_fillerreportTemplate_filler_reportTemplate_fillerreport c8fe7315-8964-4e1d-bb7b-dd194eb530e7 2012-06-26 12:58:47.379 UTC 2396f4ec-735e-4732-8b30-28ed175d24aa 2012-06-25 11:21:38.371 UTC a4cdeff4-ed98-4f75-b151-7212198e7f5c 2012-07-12 10:26:17.213 UTC 69d2c52d-d726-4192-a05d-e8f1208a9a06 2012-06-25 11:17:38.723 UTC 525e1636-8c28-4b59-b057-c3f76b11134a 2012-06-28 12:15:03.701 UTC 818f8f20-80cb-4ef3-972a-d2b1c834921a 2012-06-25 11:36:51.476 UTC 937b9787-a6c5-4945-ac2a-825f07b6246f 2012-07-03 07:14:47.676 UTC ca5aedab-ad1f-4305-90ee-557ad4f70d7b 2012-06-25 11:21:11.391 UTC 13ac32c9-1867-4e7e-9bc9-32dc778fe627 2012-06-28 10:17:00.521 UTC 78410155-773f-4d1f-8a17-896cc99c296f 2012-06-25 13:12:55.751 UTC 07299f6e-4435-45d9-be1a-80c4e7056817 2012-07-12 10:08:14.34 UTC 3319ead4-00e8-4a9e-8799-77ce22b36249 2012-06-28 12:09:51.744 UTC 920cb5e0-1a2a-41ca-8fa8-5063a4913e09 2012-06-25 13:13:40.746 UTC 0532d5fa-0649-4291-9651-c89f604fe150 2012-07-12 10:24:02.579 UTC f3ba6979-742a-426d-be35-3db371679bd6 2012-06-26 13:21:32.857 UTC f7d0eacd-8b3d-485d-8427-d2f0e0255085 2012-06-28 12:10:33.171 UTC 54b9b289-4c20-48c1-96b7-cd875b947b95 2012-06-25 11:29:43.926 UTC 9163a693-35c0-4feb-8c06-e4b949c25cf6 2012-06-25 11:37:26.902 UTC b9430232-c48c-45f6-a7b9-cbea16ad3520 2012-07-12 10:21:27.147 UTC 22acaf37-bf74-4e58-8e73-2678725beba7 2012-06-28 12:10:40.499 UTC ff41fd33-70c8-4f8f-b141-9b42e7e6f87f 2012-06-28 08:36:41.213 UTC 3e360bf9-386f-468c-bbfd-710046e6cff6 2012-06-27 10:05:49.887 UTC 85ef16e0-1255-4864-a35f-01b56e804a90 2012-06-25 11:20:14.380 UTC caed029a-0772-459e-b413-2d929fd6cef2 2012-06-28 09:36:22.361 UTC 25870456-d217-4a7c-84bc-3136a29369c8 2012-07-02 10:26:25.624 UTC bac589f2-e74c-4396-9239-5c467c3c0b59 2012-06-26 12:47:26.400 UTC 54a836b6-78b5-49af-8c88-cbaa38690216 2012-06-25 10:50:44.520 UTC 0afb42b7-533f-45d0-95d4-2b4c6c549a20 2012-06-25 11:22:01.548 UTC 95b3bbf0-bd41-4c4a-92f7-4032681fd52a 2012-07-02 08:01:23.279 UTC 1bab3ff0-3221-4ec1-abeb-471537f4efc3 2012-06-28 10:20:43.402 UTC 1e0b26cf-c3d2-4a70-ae92-d2f7995e1809 2012-06-28 12:05:08.712 UTC 4147d233-df63-4a36-b486-33986cbfaf3b 2012-06-25 11:36:07.803 UTC 0d6c1a82-25f6-498c-a6d2-b7534d501835 2012-06-28 12:07:13.764 UTC 02e33651-21dd-4ab7-b7de-72d78b4750d4 2012-06-28 10:15:37.319 UTC 7fcf1a0c-d4c9-4019-8b43-f0f47ff74054 2012-07-12 10:27:03.295 UTC baeaf8a2-b974-4e40-9528-7f2edef21a62 2012-06-26 13:25:57.130 UTC b8b10042-0543-468e-b922-2f966cb99678 2012-06-28 09:53:23.543 UTC 5e77afde-3e2d-42df-bebe-3d8af71b7442 2012-07-12 10:23:02.137 UTC ad0f1599-176d-4d3c-9990-185eebe8a84e 2012-06-28 12:08:34.567 UTC 0ce443f6-43d4-4a7b-ba5f-858ac5a07662 2012-06-25 13:00:44.644 UTC de4de229-d42e-45df-8fa7-c7b4fb90ed17 2012-07-02 08:23:51.795 UTC 5404d638-aa7f-4c7b-8f10-d4615d24ac94 2012-06-26 13:23:18.955 UTC 5d6af32a-4820-4cb3-ad31-c49f876d58bb 2012-07-02 08:25:20.85 UTC 141eb5e0-0e41-4635-ac15-67ec1817c1b2 2012-06-28 09:00:48.942 UTC 786bd227-8c48-465e-a5e5-e826ecaffec1 2012-06-26 13:18:29.985 UTC 82e1735a-1b42-4ec2-84de-d3d06c1f3291 2012-06-26 12:38:48.854 UTC 47f0d709-437b-4ded-80ab-d5e4a94ac93a 2012-07-02 08:15:11.580 UTC 6291a728-326a-4270-b170-9d53c1240a8f 2012-06-28 08:40:56.869 UTC e2efad64-69ee-422d-8e94-f1f9fbf845fd 2012-06-25 10:42:00.424 UTC 72d08c8e-b3f7-413e-ab53-88e8132140e4 2012-06-28 08:55:11.523 UTC 26c08e76-efa4-4741-943c-ddbb42aced92 2012-06-28 10:21:18.155 UTC b0eaa859-41e1-4316-a8e3-92c7f1af328f 2012-06-26 12:39:02.622 UTC Create_votable_from_Precedence00ColumnNameWithConfigFile00 galfitgal 2012-07-27 10:51:57.811 UTC votable00VotableWithnewColumnsGalfitVotabletjoinvotable10votable20outputFileOut00org.purl.wf4ever.astrotavernastilts-activity0.9org.purl.wf4ever.astrotaverna.tjoin.TjoinActivity String net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeRead_FilefilePath0string00net.sf.taverna.t2.activitiesbeanshell-activity1.4net.sf.taverna.t2.activities.beanshell.BeanshellActivity filePath 0 text/plain java.lang.String true string 0 0 workflow net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeList_from_columnColumnName0voTable0list11org.purl.wf4ever.astrotavernastilts-activity0.9org.purl.wf4ever.astrotaverna.voutils.GetListFromColumnActivity String net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invoketransform_BuDS_or_BDBS_GalfitFilegalfitFileContent0resultTable00 it reads galfit configuration file if its components are: disk, bulb, bar and sky or disk, bulb and sky. 2012-07-30 12:57:29.493 UTC net.sf.taverna.t2.activitiesbeanshell-activity1.4net.sf.taverna.t2.activities.beanshell.BeanshellActivity galfitFileContent 0 text/plain java.lang.String true resultTable 0 0 workflow net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeFormat_conversionvoTable0formatTableIn0formatTableOut0outputTable00org.purl.wf4ever.astrotavernastilts-activity0.9org.purl.wf4ever.astrotaverna.tpipe.FormatConversionActivity String net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokecsv_valuevalue00net.sf.taverna.t2.activitiesstringconstant-activity1.4net.sf.taverna.t2.activities.stringconstant.StringConstantActivity csv net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokevotable_valuevalue00net.sf.taverna.t2.activitiesstringconstant-activity1.4net.sf.taverna.t2.activities.stringconstant.StringConstantActivity votable net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeAdd_Columnexpression0nameNewCol0voTable0outputTable00org.purl.wf4ever.astrotavernastilts-activity0.9org.purl.wf4ever.astrotaverna.tpipe.AddColumnByExpressionActivity String net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeAdd_Column_2voTable0nameNewCol0expression0outputTable00org.purl.wf4ever.astrotavernastilts-activity0.9org.purl.wf4ever.astrotaverna.tpipe.AddColumnByExpressionActivity String net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeAdd_Column_3voTable0expression0nameNewCol0outputTable00org.purl.wf4ever.astrotavernastilts-activity0.9org.purl.wf4ever.astrotaverna.tpipe.AddColumnByExpressionActivity String net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokeexpression_valuevalue00net.sf.taverna.t2.activitiesstringconstant-activity1.4net.sf.taverna.t2.activities.stringconstant.StringConstantActivity 0.396 * hr_disk net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokehr_disk_arcsec_valuevalue00net.sf.taverna.t2.activitiesstringconstant-activity1.4net.sf.taverna.t2.activities.stringconstant.StringConstantActivity hr_disk_arcsec net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokere_bul_carsec_valuevalue00net.sf.taverna.t2.activitiesstringconstant-activity1.4net.sf.taverna.t2.activities.stringconstant.StringConstantActivity re_bul_arcsec net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokeexpression_value_1value00net.sf.taverna.t2.activitiesstringconstant-activity1.4net.sf.taverna.t2.activities.stringconstant.StringConstantActivity 0.396 * re_bul net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokeexpression_value_2value00net.sf.taverna.t2.activitiesstringconstant-activity1.4net.sf.taverna.t2.activities.stringconstant.StringConstantActivity 0.396 * re_bar net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokere_bar_arcsec_valuevalue00net.sf.taverna.t2.activitiesstringconstant-activity1.4net.sf.taverna.t2.activities.stringconstant.StringConstantActivity re_bar_arcsec net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeCat_n-tablesvotableList1outputFileOut00org.purl.wf4ever.astrotavernastilts-activity0.9org.purl.wf4ever.astrotaverna.tcat.TcatListActivity String net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeMakeDoubleTypesin0out00 It replaces float by double types 2012-09-07 12:49:17.63 UTC net.sf.taverna.t2.activitiesbeanshell-activity1.4net.sf.taverna.t2.activities.beanshell.BeanshellActivity in 0 text/plain java.lang.String true out 0 0 workflow net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invoketjoinvotable1votabletjoinvotable2Add_Column_3outputTableRead_FilefilePathList_from_columnlistList_from_columnColumnNameColumnNameWithConfigFileList_from_columnvoTablevotabletransform_BuDS_or_BDBS_GalfitFilegalfitFileContentRead_FilestringFormat_conversionvoTabletransform_BuDS_or_BDBS_GalfitFileresultTableFormat_conversionformatTableIncsv_valuevalueFormat_conversionformatTableOutvotable_valuevalueAdd_Columnexpressionexpression_valuevalueAdd_ColumnnameNewColhr_disk_arcsec_valuevalueAdd_ColumnvoTableCat_n-tablesoutputFileOutAdd_Column_2voTableAdd_ColumnoutputTableAdd_Column_2nameNewColre_bul_carsec_valuevalueAdd_Column_2expressionexpression_value_1valueAdd_Column_3voTableAdd_Column_2outputTableAdd_Column_3expressionexpression_value_2valueAdd_Column_3nameNewColre_bar_arcsec_valuevalueCat_n-tablesvotableListMakeDoubleTypesoutMakeDoubleTypesinFormat_conversionoutputTableVotableWithnewColumnstjoinoutputFileOutGalfitVotableAdd_Column_3outputTable Create votable from different galfit paramenter adjustments 2012-09-07 12:51:19.580 UTC 2ab3e59f-5ce4-4686-a06e-83c71fbaecb7 2012-07-23 10:44:37.451 UTC 0c3df121-2126-45e8-b2e0-20967a79eb21 2012-07-30 13:01:35.193 UTC 89eac41a-5d33-4ade-bde5-2b6022c61238 2012-07-23 10:43:40.272 UTC d5e9ec4e-ed98-4d9a-b18d-590178cfddd3 2012-09-07 12:49:21.601 UTC 0c7ac8ed-fd00-4cdd-897a-ff4e1805d860 2012-07-23 10:01:20.585 UTC cab519f8-0cf2-49d7-8893-a42580bc7bcc 2012-07-23 11:25:04.897 UTC Julián Garrido 2012-07-26 12:26:20.176 UTC 33d0d968-6e79-4526-b768-a5bb1a152973 2012-09-07 12:54:51.320 UTC 13f073e8-1524-4fc4-9421-b0ec0d605ad9 2012-07-23 10:48:53.303 UTC 5c8a4f9b-fa27-49e4-9c20-ea98bd579b13 2012-08-01 08:46:15.729 UTC cf98633d-19ae-4831-8ece-5b7cbc661664 2012-09-07 12:51:38.11 UTC 3f315c5d-8b23-4fad-847d-b6580d31c814 2012-08-21 11:46:03.327 UTC b1a215cd-9287-4b27-b68a-50e567d65e53 2012-07-23 10:51:10.168 UTC 08afb3c6-0687-4388-8e3c-ed2e5085e05e 2012-07-23 10:45:33.292 UTC ca5d4e9c-c0ec-4dd9-94d9-4933a00a4efc 2012-07-26 12:23:24.384 UTC 0747de1b-8027-4d37-b42a-28064d744b67 2012-07-23 11:05:00.361 UTC 18249ea5-0878-45bb-9766-e11b2ec77418 2012-07-23 10:49:55.51 UTC 995264ae-4ba8-4bfc-9887-4e4d89f4b97a 2012-07-27 13:17:15.112 UTC 9028041f-6581-4ba1-a8cc-dc580714d3c6 2012-07-23 10:03:28.964 UTC d7a59f82-997d-48c0-9b70-cfa74c674153 2012-07-31 06:47:57.643 UTC 602c0d95-8f35-4153-a001-2a6b316e8e6d 2012-07-23 09:11:10.375 UTC a5d0b33f-3288-4e50-b548-c07d85b0a81d 2012-07-30 12:56:03.191 UTC 721fc79a-f8b4-4c77-b8d5-2fecbe80036b 2012-08-21 11:42:59.173 UTC 4a6a49fc-2c90-40f5-b2db-2be6724eaad6 2012-07-23 10:54:57.683 UTC 9c8ff26d-e8d8-4823-869d-6d5dd4a8394c 2012-08-21 11:43:45.250 UTC 12c0be0d-710e-4ad8-b755-ddb83017598f 2012-07-26 12:26:22.181 UTC 9f249ac3-e4ea-4eb2-a758-2a2da0ef0389 2012-07-30 12:49:48.651 UTC 58d19d35-80f5-475a-94cc-7b76c73770d4 2012-08-21 12:06:36.769 UTC 3a960ddf-3908-46ea-b7ca-b7bad6381272 2012-08-01 08:28:00.205 UTC 774c5343-2003-47ba-8c22-945f0637d20d 2012-07-27 10:52:57.585 UTC 4966496d-01ef-4784-82c4-c53e5d920da8 2012-08-21 12:17:51.564 UTC bdf482ac-9111-41c0-ad0b-34741757c228 2012-08-21 11:39:43.340 UTC 929ea4f8-6b67-4f1c-a5f7-5c222855bebc 2012-07-30 12:57:35.689 UTC 2e3fe473-2ae3-40be-a836-371eddaec5ad 2012-07-30 12:59:50.799 UTC 05001173-a4c6-4e8d-a6a0-87ff08cb1854 2012-07-23 11:03:32.180 UTC 205d0e69-2e80-4a4f-80c3-23bc89c1b87f 2012-08-01 07:50:21.141 UTC The workflow creates a votable from the results provided by galfit. It returns this table and an aditional table that is joined to the input table. It requires a votable that contains a column with the file name resulting from running galfit and such files must be accesible from taverna. It uses astrotaverna plugin (http://wf4ever.github.com/astrotaverna/) and it has a dependency on stil library (http://www.star.bris.ac.uk/~mbt/stil/). The galfit files may come from adjusting 'disk, bulb, bar and sky' or 'disk, bulb and sky'. 2012-09-07 12:54:47.852 UTC 1f1606b2-f416-41da-bf7b-f97f937404f8 2012-07-23 11:08:12.415 UTC f10c999b-4267-45b1-b536-9f5f4e2dde12 2012-07-23 10:39:54.643 UTC caf0ebc2-8869-4f7e-89fa-4009a3270a3b 2012-07-23 10:52:57.522 UTC 0bfd956a-00b8-4b2e-a3ed-92fac0d04604 2012-07-23 10:05:31.602 UTC df2af2fa-e6e3-41f6-8b7d-81981d8f0204 2012-07-23 10:41:24.65 UTC 391999d6-2b40-4677-91d9-8500ff7d42f0 2012-08-21 11:40:59.910 UTC b53c75a1-54ac-422f-bf73-0d666fe76d04 2012-07-23 10:46:44.268 UTC Workflow1ColumnNameWithConfigFile00 galfit 2012-07-23 08:34:18.986 UTC ColumnNameWithNewConfigFile00 galfit_exp 2012-07-23 08:35:04.942 UTC votable00Precedence00Tool_STDOUTTool_STDERRResultGalfitFilesCreate_galfit_scriptcolumnNameWithConfigFile0columnNameWithNewConfigFile0votable0script00 It creates a script that call galfit and rename the resulting file. 2012-09-07 12:35:02.795 UTC net.sf.taverna.t2.activitiesbeanshell-activity1.4net.sf.taverna.t2.activities.beanshell.BeanshellActivity votable 0 text/plain java.lang.String true columnNameWithNewConfigFile 0 text/plain java.lang.String true columnNameWithConfigFile 0 text/plain java.lang.String true script 0 0 workflow stil.jar net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeRunGalfitscript0STDOUT00STDERR00 It run the script that receives as input. In order to make it runnable, it uses chmod 2012-09-07 12:36:35.436 UTC net.sf.taverna.t2.activitiesexternal-tool-activity1.4net.sf.taverna.t2.activities.externaltool.ExternalToolActivity 789663B8-DA91-428A-9F7D-B3F3DA185FD4 default local <?xml version="1.0" encoding="UTF-8"?> <localInvocation><shellPrefix>/bin/sh -c</shellPrefix><linkCommand>/bin/ln -s %%PATH_TO_ORIGINAL%% %%TARGET_NAME%%</linkCommand></localInvocation> 2384f25b-a4c9-47db-ada2-2eafbdd03c2a chmod +x script ./script 1200 1800 script script true false false UTF-8 false false false false true true 0 false net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeList_from_columnColumnName0voTable0list11org.purl.wf4ever.astrotavernastilts-activity0.9org.purl.wf4ever.astrotaverna.voutils.GetListFromColumnActivity String net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeCreate_galfit_scriptcolumnNameWithConfigFileColumnNameWithConfigFileCreate_galfit_scriptcolumnNameWithNewConfigFileColumnNameWithNewConfigFileCreate_galfit_scriptvotablevotableRunGalfitscriptCreate_galfit_scriptscriptList_from_columnColumnNameColumnNameWithNewConfigFileList_from_columnvoTablevotableTool_STDOUTRunGalfitSTDOUTTool_STDERRRunGalfitSTDERRResultGalfitFilesList_from_columnlist f7dcf557-e63b-4a15-b31b-e800e694ed34 2012-07-24 08:54:32.736 UTC 3cc1057b-3bd8-40d5-902f-83992c391069 2012-07-10 13:36:44.762 UTC 0afb42b7-533f-45d0-95d4-2b4c6c549a20 2012-06-25 11:22:01.548 UTC 95b3bbf0-bd41-4c4a-92f7-4032681fd52a 2012-07-02 08:01:23.279 UTC ad0f1599-176d-4d3c-9990-185eebe8a84e 2012-06-28 12:08:34.567 UTC 525e1636-8c28-4b59-b057-c3f76b11134a 2012-06-28 12:15:03.701 UTC 47f0d709-437b-4ded-80ab-d5e4a94ac93a 2012-07-02 08:15:11.580 UTC de4de229-d42e-45df-8fa7-c7b4fb90ed17 2012-07-02 08:23:51.795 UTC b8b10042-0543-468e-b922-2f966cb99678 2012-06-28 09:53:23.543 UTC 5d6af32a-4820-4cb3-ad31-c49f876d58bb 2012-07-02 08:25:20.85 UTC 5404d638-aa7f-4c7b-8f10-d4615d24ac94 2012-06-26 13:23:18.955 UTC 85ef16e0-1255-4864-a35f-01b56e804a90 2012-06-25 11:20:14.380 UTC c8fe7315-8964-4e1d-bb7b-dd194eb530e7 2012-06-26 12:58:47.379 UTC 682666fd-005f-46eb-b431-d2567f46941e 2012-09-07 12:37:02.939 UTC 8c783633-673f-46dc-af45-4d57c57af31d 2012-07-10 13:37:49.41 UTC aae6b426-cdf3-4e48-9c5d-09cda2522fb0 2012-07-10 10:25:32.685 UTC 3e360bf9-386f-468c-bbfd-710046e6cff6 2012-06-27 10:05:49.887 UTC 41ba73e5-4586-48ab-aa07-bda62d8c4eff 2012-07-23 08:36:51.646 UTC 72d08c8e-b3f7-413e-ab53-88e8132140e4 2012-06-28 08:55:11.523 UTC 780252cc-c3cf-4fbc-a59e-dc22b57b8f05 2012-07-11 07:18:53.378 UTC 937b9787-a6c5-4945-ac2a-825f07b6246f 2012-07-03 07:14:47.676 UTC 22acaf37-bf74-4e58-8e73-2678725beba7 2012-06-28 12:10:40.499 UTC bcac6117-e659-43ac-afe4-41f6a365c28d 2012-07-11 07:15:08.130 UTC 9163a693-35c0-4feb-8c06-e4b949c25cf6 2012-06-25 11:37:26.902 UTC caed029a-0772-459e-b413-2d929fd6cef2 2012-06-28 09:36:22.361 UTC 82e1735a-1b42-4ec2-84de-d3d06c1f3291 2012-06-26 12:38:48.854 UTC 54a836b6-78b5-49af-8c88-cbaa38690216 2012-06-25 10:50:44.520 UTC 3043cb5b-075e-4f23-b6a1-f609c7c45315 2012-07-10 10:38:05.287 UTC e2efad64-69ee-422d-8e94-f1f9fbf845fd 2012-06-25 10:42:00.424 UTC affa8a2a-a2d0-460a-81f9-c3e1241412e5 2012-08-21 11:36:32.954 UTC f7d0eacd-8b3d-485d-8427-d2f0e0255085 2012-06-28 12:10:33.171 UTC 920cb5e0-1a2a-41ca-8fa8-5063a4913e09 2012-06-25 13:13:40.746 UTC 4147d233-df63-4a36-b486-33986cbfaf3b 2012-06-25 11:36:07.803 UTC 3319ead4-00e8-4a9e-8799-77ce22b36249 2012-06-28 12:09:51.744 UTC 2396f4ec-735e-4732-8b30-28ed175d24aa 2012-06-25 11:21:38.371 UTC 25870456-d217-4a7c-84bc-3136a29369c8 2012-07-02 10:26:25.624 UTC 02e33651-21dd-4ab7-b7de-72d78b4750d4 2012-06-28 10:15:37.319 UTC b0eaa859-41e1-4316-a8e3-92c7f1af328f 2012-06-26 12:39:02.622 UTC 41e33b3c-5f25-41f9-b28e-9240f49dd681 2012-07-10 10:30:10.237 UTC 13ac32c9-1867-4e7e-9bc9-32dc778fe627 2012-06-28 10:17:00.521 UTC 4a2e9df1-9d25-4e16-b23d-f27d6c5823b4 2012-07-10 10:24:34.706 UTC ca5aedab-ad1f-4305-90ee-557ad4f70d7b 2012-06-25 11:21:11.391 UTC 1e0b26cf-c3d2-4a70-ae92-d2f7995e1809 2012-06-28 12:05:08.712 UTC 78410155-773f-4d1f-8a17-896cc99c296f 2012-06-25 13:12:55.751 UTC 0ce443f6-43d4-4a7b-ba5f-858ac5a07662 2012-06-25 13:00:44.644 UTC 46c56064-01ae-4eb8-9a8d-3f58d4e59d77 2012-07-23 08:37:22.719 UTC 818f8f20-80cb-4ef3-972a-d2b1c834921a 2012-06-25 11:36:51.476 UTC f3ba6979-742a-426d-be35-3db371679bd6 2012-06-26 13:21:32.857 UTC 786bd227-8c48-465e-a5e5-e826ecaffec1 2012-06-26 13:18:29.985 UTC ed0d024a-31c4-4b67-91b5-dae69ac0308f 2012-08-01 08:08:15.867 UTC 1bab3ff0-3221-4ec1-abeb-471537f4efc3 2012-06-28 10:20:43.402 UTC 0d6c1a82-25f6-498c-a6d2-b7534d501835 2012-06-28 12:07:13.764 UTC bac589f2-e74c-4396-9239-5c467c3c0b59 2012-06-26 12:47:26.400 UTC 141eb5e0-0e41-4635-ac15-67ec1817c1b2 2012-06-28 09:00:48.942 UTC 69d2c52d-d726-4192-a05d-e8f1208a9a06 2012-06-25 11:17:38.723 UTC 54b9b289-4c20-48c1-96b7-cd875b947b95 2012-06-25 11:29:43.926 UTC 26c08e76-efa4-4741-943c-ddbb42aced92 2012-06-28 10:21:18.155 UTC 535703e5-ebc1-4620-986c-cb383e131c2b 2012-08-21 11:49:02.598 UTC baeaf8a2-b974-4e40-9528-7f2edef21a62 2012-06-26 13:25:57.130 UTC 6291a728-326a-4270-b170-9d53c1240a8f 2012-06-28 08:40:56.869 UTC ff41fd33-70c8-4f8f-b141-9b42e7e6f87f 2012-06-28 08:36:41.213 UTC 02d19dcf-0d2f-4f70-a4e4-2ca6e7851ad2 2012-08-06 09:47:51.223 UTC Run_galfit_using_a_vColumnNameWithConfigFile00 galfit 2012-07-23 08:34:18.986 UTC ColumnNameWithNewConfigFile00 galfit_exp 2012-07-23 08:35:04.942 UTC votable00Precedence00Tool_STDOUTTool_STDERRResultGalfitFilesCreate_galfit_scriptcolumnNameWithConfigFile0columnNameWithNewConfigFile0votable0script00 It creates a script that call galfit and rename the resulting file. 2012-09-07 12:40:23.383 UTC net.sf.taverna.t2.activitiesbeanshell-activity1.4net.sf.taverna.t2.activities.beanshell.BeanshellActivity votable 0 text/plain java.lang.String true columnNameWithNewConfigFile 0 text/plain java.lang.String true columnNameWithConfigFile 0 text/plain java.lang.String true script 0 0 workflow stil.jar net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeRunGalfitscript0STDOUT00STDERR00 It run the script that receives as input. In order to make it runnable, it uses chmod 2012-09-07 12:40:30.866 UTC net.sf.taverna.t2.activitiesexternal-tool-activity1.4net.sf.taverna.t2.activities.externaltool.ExternalToolActivity 789663B8-DA91-428A-9F7D-B3F3DA185FD4 default local <?xml version="1.0" encoding="UTF-8"?> <localInvocation><shellPrefix>/bin/sh -c</shellPrefix><linkCommand>/bin/ln -s %%PATH_TO_ORIGINAL%% %%TARGET_NAME%%</linkCommand></localInvocation> 2384f25b-a4c9-47db-ada2-2eafbdd03c2a chmod +x script ./script pwd ls 1200 1800 script script true false false UTF-8 false false false false true true 0 false net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeList_from_columnvoTable0ColumnName0list11org.purl.wf4ever.astrotavernastilts-activity0.9org.purl.wf4ever.astrotaverna.voutils.GetListFromColumnActivity String net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeCreate_galfit_scriptcolumnNameWithConfigFileColumnNameWithConfigFileCreate_galfit_scriptcolumnNameWithNewConfigFileColumnNameWithNewConfigFileCreate_galfit_scriptvotablevotableRunGalfitscriptCreate_galfit_scriptscriptList_from_columnvoTablevotableList_from_columnColumnNameColumnNameWithNewConfigFileTool_STDOUTRunGalfitSTDOUTTool_STDERRRunGalfitSTDERRResultGalfitFilesList_from_columnlist 4147d233-df63-4a36-b486-33986cbfaf3b 2012-06-25 11:36:07.803 UTC 3cc1057b-3bd8-40d5-902f-83992c391069 2012-07-10 13:36:44.762 UTC 525e1636-8c28-4b59-b057-c3f76b11134a 2012-06-28 12:15:03.701 UTC 47f0d709-437b-4ded-80ab-d5e4a94ac93a 2012-07-02 08:15:11.580 UTC 5404d638-aa7f-4c7b-8f10-d4615d24ac94 2012-06-26 13:23:18.955 UTC 69d2c52d-d726-4192-a05d-e8f1208a9a06 2012-06-25 11:17:38.723 UTC d2ae2fc4-9ea0-4d48-8dc1-b3e1b583986f 2012-08-21 11:37:12.819 UTC 1bab3ff0-3221-4ec1-abeb-471537f4efc3 2012-06-28 10:20:43.402 UTC baeaf8a2-b974-4e40-9528-7f2edef21a62 2012-06-26 13:25:57.130 UTC b0eaa859-41e1-4316-a8e3-92c7f1af328f 2012-06-26 12:39:02.622 UTC b8b10042-0543-468e-b922-2f966cb99678 2012-06-28 09:53:23.543 UTC fb8d95d4-cfcc-4e6d-a9bd-9c783b0d17fe 2012-08-01 08:09:43.965 UTC 85ef16e0-1255-4864-a35f-01b56e804a90 2012-06-25 11:20:14.380 UTC 95b3bbf0-bd41-4c4a-92f7-4032681fd52a 2012-07-02 08:01:23.279 UTC 920cb5e0-1a2a-41ca-8fa8-5063a4913e09 2012-06-25 13:13:40.746 UTC 3319ead4-00e8-4a9e-8799-77ce22b36249 2012-06-28 12:09:51.744 UTC de4de229-d42e-45df-8fa7-c7b4fb90ed17 2012-07-02 08:23:51.795 UTC f7dcf557-e63b-4a15-b31b-e800e694ed34 2012-07-24 08:54:32.736 UTC 78410155-773f-4d1f-8a17-896cc99c296f 2012-06-25 13:12:55.751 UTC 26c08e76-efa4-4741-943c-ddbb42aced92 2012-06-28 10:21:18.155 UTC 13ac32c9-1867-4e7e-9bc9-32dc778fe627 2012-06-28 10:17:00.521 UTC 6291a728-326a-4270-b170-9d53c1240a8f 2012-06-28 08:40:56.869 UTC 54b9b289-4c20-48c1-96b7-cd875b947b95 2012-06-25 11:29:43.926 UTC 72d08c8e-b3f7-413e-ab53-88e8132140e4 2012-06-28 08:55:11.523 UTC c378b1ae-f1f9-4a4a-b1a2-565d4faa3d85 2012-09-07 12:40:33.624 UTC ff41fd33-70c8-4f8f-b141-9b42e7e6f87f 2012-06-28 08:36:41.213 UTC aae6b426-cdf3-4e48-9c5d-09cda2522fb0 2012-07-10 10:25:32.685 UTC 141eb5e0-0e41-4635-ac15-67ec1817c1b2 2012-06-28 09:00:48.942 UTC 786bd227-8c48-465e-a5e5-e826ecaffec1 2012-06-26 13:18:29.985 UTC 25870456-d217-4a7c-84bc-3136a29369c8 2012-07-02 10:26:25.624 UTC 02e33651-21dd-4ab7-b7de-72d78b4750d4 2012-06-28 10:15:37.319 UTC caed029a-0772-459e-b413-2d929fd6cef2 2012-06-28 09:36:22.361 UTC e2efad64-69ee-422d-8e94-f1f9fbf845fd 2012-06-25 10:42:00.424 UTC f3ba6979-742a-426d-be35-3db371679bd6 2012-06-26 13:21:32.857 UTC 7626cd03-bef5-4808-822a-23d157af466a 2012-09-07 12:41:15.72 UTC ca5aedab-ad1f-4305-90ee-557ad4f70d7b 2012-06-25 11:21:11.391 UTC 3043cb5b-075e-4f23-b6a1-f609c7c45315 2012-07-10 10:38:05.287 UTC It runs galfit and adjust the paramenters specified. This workflow has a dependency on the stil library (http://www.star.bris.ac.uk/~mbt/stil/). Galfit is called by a bash script as 'galfit'. Galfit is called for every row in the votable. Columns where the result file name and the configuration file name are defined must be especified. These files should be accesibles from taverna. ExperimentFolder provides the root folder for the experiment. If the configuration files contain references to other files, they must be accesible from taverna. 2012-09-07 12:40:57.316 UTC ad0f1599-176d-4d3c-9990-185eebe8a84e 2012-06-28 12:08:34.567 UTC 41e33b3c-5f25-41f9-b28e-9240f49dd681 2012-07-10 10:30:10.237 UTC 1e0b26cf-c3d2-4a70-ae92-d2f7995e1809 2012-06-28 12:05:08.712 UTC 8c783633-673f-46dc-af45-4d57c57af31d 2012-07-10 13:37:49.41 UTC bac589f2-e74c-4396-9239-5c467c3c0b59 2012-06-26 12:47:26.400 UTC 22acaf37-bf74-4e58-8e73-2678725beba7 2012-06-28 12:10:40.499 UTC 82e1735a-1b42-4ec2-84de-d3d06c1f3291 2012-06-26 12:38:48.854 UTC 54a836b6-78b5-49af-8c88-cbaa38690216 2012-06-25 10:50:44.520 UTC f7d0eacd-8b3d-485d-8427-d2f0e0255085 2012-06-28 12:10:33.171 UTC 41ba73e5-4586-48ab-aa07-bda62d8c4eff 2012-07-23 08:36:51.646 UTC Run galfit using a votable 2012-09-07 12:41:14.480 UTC 5d6af32a-4820-4cb3-ad31-c49f876d58bb 2012-07-02 08:25:20.85 UTC 9163a693-35c0-4feb-8c06-e4b949c25cf6 2012-06-25 11:37:26.902 UTC 46c56064-01ae-4eb8-9a8d-3f58d4e59d77 2012-07-23 08:37:22.719 UTC 0d6c1a82-25f6-498c-a6d2-b7534d501835 2012-06-28 12:07:13.764 UTC 2396f4ec-735e-4732-8b30-28ed175d24aa 2012-06-25 11:21:38.371 UTC 818f8f20-80cb-4ef3-972a-d2b1c834921a 2012-06-25 11:36:51.476 UTC Julian Garrido 2012-09-07 12:41:04.805 UTC 647f2360-3cf5-4b46-b5d4-cc61a6b3ea02 2012-08-06 10:02:25.960 UTC bcac6117-e659-43ac-afe4-41f6a365c28d 2012-07-11 07:15:08.130 UTC 0afb42b7-533f-45d0-95d4-2b4c6c549a20 2012-06-25 11:22:01.548 UTC 3e360bf9-386f-468c-bbfd-710046e6cff6 2012-06-27 10:05:49.887 UTC 937b9787-a6c5-4945-ac2a-825f07b6246f 2012-07-03 07:14:47.676 UTC 4a2e9df1-9d25-4e16-b23d-f27d6c5823b4 2012-07-10 10:24:34.706 UTC c8fe7315-8964-4e1d-bb7b-dd194eb530e7 2012-06-26 12:58:47.379 UTC 0ce443f6-43d4-4a7b-ba5f-858ac5a07662 2012-06-25 13:00:44.644 UTC 780252cc-c3cf-4fbc-a59e-dc22b57b8f05 2012-07-11 07:18:53.378 UTC Create_votable_from_FileVotablePath00 /home/julian/Documents/wf4ever/showcase61.2goldenExampler/2GE/workflows/cat_sex_total_noback.votable 2012-07-23 10:54:52.994 UTC Precedence00ColumnNameWithConfigFile00 galfit_exp 2012-07-23 10:54:36.665 UTC VotableWithnewColumnsCreateVotableFromGalfitConfigFilescolumnNameWithConfigFile0FileVotablePath0resultVotable00 Given a votable that contains a column whose values are galfit files. It opens the file, extracts information and creates a votable. 2012-09-07 12:45:05.597 UTC net.sf.taverna.t2.activitiesbeanshell-activity1.4net.sf.taverna.t2.activities.beanshell.BeanshellActivity columnNameWithConfigFile 0 text/plain java.lang.String true FileVotablePath 0 text/plain java.lang.String true resultVotable 0 0 workflow stil.jar net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invoketjoinvotable10votable20outputFileOut00org.purl.wf4ever.astrotavernastilts-activity0.9org.purl.wf4ever.astrotaverna.tjoin.TjoinActivity String net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeRead_FilefilePath0string00net.sf.taverna.t2.activitiesbeanshell-activity1.4net.sf.taverna.t2.activities.beanshell.BeanshellActivity filePath 0 text/plain java.lang.String true string 0 0 workflow net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeCreateVotableFromGalfitConfigFilescolumnNameWithConfigFileColumnNameWithConfigFileCreateVotableFromGalfitConfigFilesFileVotablePathFileVotablePathtjoinvotable1Read_Filestringtjoinvotable2CreateVotableFromGalfitConfigFilesresultVotableRead_FilefilePathFileVotablePathVotableWithnewColumnstjoinoutputFileOut The workflow creates a votable from the results provided by galfit. It returns this table and an aditional table that is joined to the input table. It requires a votable that contains a column with the file name resulting from running galfit and such files must be accesible from taverna. It uses astrotaverna plugin (http://wf4ever.github.com/astrotaverna/) and it has a dependency on stil library (http://www.star.bris.ac.uk/~mbt/stil/). 2012-09-07 12:44:09.524 UTC 05001173-a4c6-4e8d-a6a0-87ff08cb1854 2012-07-23 11:03:32.180 UTC 082ae1be-fc43-491e-bdd3-9d2f665dbd2e 2012-07-30 10:49:22.99 UTC b1a215cd-9287-4b27-b68a-50e567d65e53 2012-07-23 10:51:10.168 UTC 18249ea5-0878-45bb-9766-e11b2ec77418 2012-07-23 10:49:55.51 UTC b53c75a1-54ac-422f-bf73-0d666fe76d04 2012-07-23 10:46:44.268 UTC 0747de1b-8027-4d37-b42a-28064d744b67 2012-07-23 11:05:00.361 UTC 77f213fb-5f6c-4f5d-8567-92095765cd7a 2012-08-21 11:30:44.49 UTC 0bfd956a-00b8-4b2e-a3ed-92fac0d04604 2012-07-23 10:05:31.602 UTC 08afb3c6-0687-4388-8e3c-ed2e5085e05e 2012-07-23 10:45:33.292 UTC 13f073e8-1524-4fc4-9421-b0ec0d605ad9 2012-07-23 10:48:53.303 UTC 4a6a49fc-2c90-40f5-b2db-2be6724eaad6 2012-07-23 10:54:57.683 UTC 2ab3e59f-5ce4-4686-a06e-83c71fbaecb7 2012-07-23 10:44:37.451 UTC 602c0d95-8f35-4153-a001-2a6b316e8e6d 2012-07-23 09:11:10.375 UTC 9028041f-6581-4ba1-a8cc-dc580714d3c6 2012-07-23 10:03:28.964 UTC caf0ebc2-8869-4f7e-89fa-4009a3270a3b 2012-07-23 10:52:57.522 UTC Julian Garrido 2012-09-07 12:44:15.626 UTC df2af2fa-e6e3-41f6-8b7d-81981d8f0204 2012-07-23 10:41:24.65 UTC Create votable from galfit results 2012-09-07 12:44:37.341 UTC f10c999b-4267-45b1-b536-9f5f4e2dde12 2012-07-23 10:39:54.643 UTC b5bc2092-25c3-49e3-82cc-a6453ad9e62d 2012-09-07 12:45:26.320 UTC 0c7ac8ed-fd00-4cdd-897a-ff4e1805d860 2012-07-23 10:01:20.585 UTC e8c94ebd-9221-40b5-9287-808fd3326bcb 2012-07-23 11:25:23.578 UTC 1f1606b2-f416-41da-bf7b-f97f937404f8 2012-07-23 11:08:12.415 UTC 89eac41a-5d33-4ade-bde5-2b6022c61238 2012-07-23 10:43:40.272 UTC Workflow1votable00 <?xml version='1.0'?> <VOTABLE version="1.1" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.ivoa.net/xml/VOTable/v1.1 http://www.ivoa.net/xml/VOTable/v1.1" xmlns="http://www.ivoa.net/xml/VOTable/v1.1"> <!-- ! VOTable written by STIL version 3.0-3 (uk.ac.starlink.votable.VOTableWriter) ! at 2012-07-12T11:16:13 !--> <RESOURCE> <TABLE name="/home/julian/Documents/wf4ever/showcase61.2goldenExampler/2GE/workflows/cat_sex_total_noback.txt" nrows="3"> <FIELD arraysize="15" datatype="char" name="imagen"/> <FIELD arraysize="1" datatype="char" name="banda"/> <FIELD arraysize="13" datatype="char" name="cat"/> <FIELD arraysize="88" datatype="char" name="galfit"/> <FIELD arraysize="92" datatype="char" name="galfit_exp"/> <FIELD arraysize="92" datatype="char" name="galfit2nd"/> <FIELD arraysize="45" datatype="char" name="psf"/> <FIELD arraysize="20" datatype="char" name="model"/> <FIELD datatype="short" name="CIG"> <VALUES null='-32768'/> </FIELD> <FIELD datatype="float" name="mB"/> <FIELD datatype="float" name="mBcorr"/> <FIELD datatype="float" name="a/2_LEDA"/> <FIELD datatype="float" name="x"/> <FIELD datatype="float" name="y"/> <FIELD datatype="float" name="ra"/> <FIELD datatype="float" name="dec"/> <FIELD datatype="float" name="mauto"/> <FIELD datatype="float" name="mauto_err"/> <FIELD datatype="double" name="isoarea"/> <FIELD datatype="float" name="fwhm"/> <FIELD datatype="float" name="back"/> <FIELD datatype="float" name="class"/> <FIELD datatype="double" name="flux_best"/> <FIELD datatype="float" name="ellip"/> <FIELD datatype="float" name="theta"/> <FIELD datatype="float" name="flux_rad0_5"/> <FIELD datatype="float" name="kron_rad"/> <FIELD datatype="float" name="a_pix"/> <FIELD datatype="float" name="b_pix"/> <FIELD datatype="float" name="a_err"/> <FIELD datatype="float" name="b_err"/> <FIELD datatype="float" name="a/2_kron"/> <FIELD datatype="float" name="dist"/> <FIELD datatype="short" name="nx"> <VALUES null='-32768'/> </FIELD> <FIELD datatype="short" name="ny"> <VALUES null='-32768'/> </FIELD> <FIELD datatype="float" name="zp"/> <FIELD datatype="short" name="xconvsize"> <VALUES null='-32768'/> </FIELD> <FIELD datatype="short" name="yconvsize"> <VALUES null='-32768'/> </FIELD> <FIELD datatype="short" name="obj_number"> <VALUES null='-32768'/> </FIELD> <FIELD datatype="double" name="axes_rate"/> <FIELD datatype="short" name="bar"> <VALUES null='-32768'/> </FIELD> <FIELD datatype="float" name="x_2"/> <FIELD datatype="float" name="y_2"/> <FIELD datatype="float" name="mauto_2"/> <FIELD datatype="float" name="flux_rad0_5_2"/> <FIELD datatype="double" name="axes_rate_2"/> <FIELD datatype="float" name="theta_2"/> <FIELD datatype="short" name="x_3"> <VALUES null='-32768'/> </FIELD> <FIELD datatype="short" name="y_3"> <VALUES null='-32768'/> </FIELD> <FIELD datatype="short" name="mauto_3"> <VALUES null='-32768'/> </FIELD> <FIELD datatype="short" name="flux_rad0_5_3"> <VALUES null='-32768'/> </FIELD> <FIELD datatype="short" name="axes_rate_3"> <VALUES null='-32768'/> </FIELD> <FIELD datatype="short" name="theta_3"> <VALUES null='-32768'/> </FIELD> <FIELD datatype="float" name="skybackground"/> <DATA> <TABLEDATA> <TR> <TD>fbCIG0011_g.fit</TD> <TD>g</TD> <TD>CIG0011_g.cat</TD> <TD>/home/julian/Documents/wf4ever/showcase61.2goldenExampler/2GE/workflows/CIG0011_g.galfit</TD> <TD>/home/julian/Documents/wf4ever/showcase61.2goldenExampler/2GE/workflows/CIG0011_g_exp.galfit</TD> <TD>/home/julian/Documents/wf4ever/showcase61.2goldenExampler/2GE/workflows/CIG0011_g_BuD.galfit</TD> <TD>/home/julian/Documents/psf/CIG0011_g_psf.fits</TD> <TD>CIG0011_g_model.fits</TD> <TD>11</TD> <TD>14.8</TD> <TD>14.11</TD> <TD>47.003</TD> <TD>461.176</TD> <TD>464.708</TD> <TD>3.633</TD> <TD>-0.737</TD> <TD>13.915</TD> <TD>0.002</TD> <TD>12425.0</TD> <TD>192.7</TD> <TD>6.948</TD> <TD>0.0</TD> <TD>587137.625</TD> <TD>0.604</TD> <TD>-14.7</TD> <TD>43.97</TD> <TD>3.87</TD> <TD>50.991</TD> <TD>20.205</TD> <TD>0.09</TD> <TD>0.036</TD> <TD>78.145</TD> <TD>7.755</TD> <TD>950</TD> <TD>951</TD> <TD>24.0077</TD> <TD>95</TD> <TD>95</TD> <TD>1</TD> <TD>0.396246</TD> <TD>0</TD> <TD>460.286</TD> <TD>463.336</TD> <TD>14.0195</TD> <TD>8.3459</TD> <TD>0.4413</TD> <TD>-11.9606</TD> <TD>0</TD> <TD>0</TD> <TD>0</TD> <TD>0</TD> <TD>0</TD> <TD>0</TD> <TD>0.1432</TD> </TR> <TR> <TD>fbCIG0011_i.fit</TD> <TD>i</TD> <TD>CIG0011_i.cat</TD> <TD>/home/julian/Documents/wf4ever/showcase61.2goldenExampler/2GE/workflows/CIG0011_i.galfit</TD> <TD>/home/julian/Documents/wf4ever/showcase61.2goldenExampler/2GE/workflows/CIG0011_i_exp.galfit</TD> <TD>/home/julian/Documents/wf4ever/showcase61.2goldenExampler/2GE/workflows/CIG0011_i_BDB.galfit</TD> <TD>/home/julian/Documents/psf/CIG0011_i_psf.fits</TD> <TD>CIG0011_i_model.fits</TD> <TD>11</TD> <TD>14.8</TD> <TD>14.11</TD> <TD>47.003</TD> <TD>460.526</TD> <TD>464.399</TD> <TD>3.633</TD> <TD>-0.737</TD> <TD>13.28</TD> <TD>0.002</TD> <TD>7375.0</TD> <TD>35.28</TD> <TD>7.46</TD> <TD>0.0</TD> <TD>602903.125</TD> <TD>0.513</TD> <TD>-12.8</TD> <TD>34.322</TD> <TD>4.75</TD> <TD>33.114</TD> <TD>16.112</TD> <TD>0.07</TD> <TD>0.035</TD> <TD>62.287</TD> <TD>8.08</TD> <TD>950</TD> <TD>950</TD> <TD>23.402</TD> <TD>95</TD> <TD>95</TD> <TD>2</TD> <TD>0.486562</TD> <TD>1</TD> <TD>459.986</TD> <TD>464.529</TD> <TD>13.4935</TD> <TD>5.65343</TD> <TD>0.4445</TD> <TD>-11.4523</TD> <TD>0</TD> <TD>0</TD> <TD>0</TD> <TD>0</TD> <TD>0</TD> <TD>0</TD> <TD>0.8994</TD> </TR> <TR> <TD>fbCIG0011_r.fit</TD> <TD>r</TD> <TD>CIG0011_r.cat</TD> <TD>/home/julian/Documents/wf4ever/showcase61.2goldenExampler/2GE/workflows/CIG0011_r.galfit</TD> <TD>/home/julian/Documents/wf4ever/showcase61.2goldenExampler/2GE/workflows/CIG0011_r_exp.galfit</TD> <TD>/home/julian/Documents/wf4ever/showcase61.2goldenExampler/2GE/workflows/CIG0011_r_BuD.galfit</TD> <TD>/home/julian/Documents/psf/CIG0011_r_psf.fits</TD> <TD>CIG0011_r_model.fits</TD> <TD>11</TD> <TD>14.8</TD> <TD>14.11</TD> <TD>47.003</TD> <TD>461.293</TD> <TD>464.531</TD> <TD>3.633</TD> <TD>-0.737</TD> <TD>13.491</TD> <TD>0.002</TD> <TD>10750.0</TD> <TD>172.15</TD> <TD>7.018</TD> <TD>0.0</TD> <TD>690821.688</TD> <TD>0.606</TD> <TD>-15.4</TD> <TD>38.147</TD> <TD>4.19</TD> 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=============================================================================== # IMAGE and GALFIT CONTROL PARAMETERS A) $imagen$ # Input data image (FITS file) B) $model$ # Output data image block C) none # Sigma image name (made from data if blank or "none") D) $psf$ # Input PSF image and (optional) diffusion kernel E) 1 # PSF fine sampling factor relative to data F) none # Bad pixel mask (FITS image or ASCII coord list) G) none # File with parameter constraints (ASCII file) H) 1 $nx$ 1 $ny$ # Image region to fit (xmin xmax ymin ymax) I) $xconvsize$ $yconvsize$ # Size of the convolution box (x y) J) $zp$ # Magnitude photometric zeropoint K) 0.396 0.396 # Plate scale (dx dy) [arcsec per pixel] O) regular # Display type (regular, curses, both) P) 0 # Create ouput only? (1=yes; 0=optimize) S) 0 # Modify/create objects interactively? # INITIAL FITTING PARAMETERS # # For component type, the allowed functions are: # sersic, expdisk, edgedisk, devauc, king, nuker, psf, # gaussian, moffat, ferrer, and sky. # # Hidden parameters will only appear when they're specified: # Bn (n=integer, Bending Modes). # C0 (diskyness/boxyness), # Fn (n=integer, Azimuthal Fourier Modes). # R0-R10 (coordinate rotation, for creating spiral structures). # To, Ti, T0-T10 (truncation function). # # ------------------------------------------------------------------------------ # par) par value(s) fit toggle(s) # parameter description # ------------------------------------------------------------------------------ # Component number: 1 0) expdisk 1) $x$ $y$ 1 1 3) $mauto$ 1 4) $flux_rad0_5$ 1 5) 1.00000 0 6) 0.00000 0 7) 0.00000 0 8) 0.00000 0 9) $axes_rate$ 1 10) $theta$ 1 Z) 0 # Component number: 2 0) expdisk 1) $x_2$ $y_2$ 1 1 3) $mauto_2$ 1 4) $flux_rad0_5_2$ 1 5) 1.00000 0 6) 0.00000 0 7) 0.00000 0 8) 0.00000 0 9) $axes_rate_2$ 1 10) $theta_2$ 1 Z) 0 # Component number: 3 0) sky # Component type 1) $skybackground$ 1 # Sky background at center of fitting region [ADUs] 2) 0.0000 0 # dsky/dx (sky gradient in x) [ADUs/pix] 3) 0.0000 0 # dsky/dy (sky gradient in y) [ADUs/pix] Z) 0 2012-07-12 12:06:56.699 UTC template200 =============================================================================== # IMAGE and GALFIT CONTROL PARAMETERS A) $imagen$ # Input data image (FITS file) B) $model$ # Output data image block C) none # Sigma image name (made from data if blank or "none") D) $psf$ # Input PSF image and (optional) diffusion kernel E) 1 # PSF fine sampling factor relative to data F) none # Bad pixel mask (FITS image or ASCII coord list) G) none # File with parameter constraints (ASCII file) H) 1 $nx$ 1 $ny$ # Image region to fit (xmin xmax ymin ymax) I) $xconvsize$ $yconvsize$ # Size of the convolution box (x y) J) $zp$ # Magnitude photometric zeropoint K) 0.396 0.396 # Plate scale (dx dy) [arcsec per pixel] O) regular # Display type (regular, curses, both) P) 0 # Create ouput only? (1=yes; 0=optimize) S) 0 # Modify/create objects interactively? # INITIAL FITTING PARAMETERS # # For component type, the allowed functions are: # sersic, expdisk, edgedisk, devauc, king, nuker, psf, # gaussian, moffat, ferrer, and sky. # # Hidden parameters will only appear when they're specified: # Bn (n=integer, Bending Modes). # C0 (diskyness/boxyness), # Fn (n=integer, Azimuthal Fourier Modes). # R0-R10 (coordinate rotation, for creating spiral structures). # To, Ti, T0-T10 (truncation function). # # ------------------------------------------------------------------------------ # par) par value(s) fit toggle(s) # parameter description # ------------------------------------------------------------------------------ # Component number: 1 0) expdisk 1) $x$ $y$ 1 1 3) $mauto$ 1 4) $flux_rad0_5$ 1 5) 1.00000 0 6) 0.00000 0 7) 0.00000 0 8) 0.00000 0 9) $axes_rate$ 1 10) $theta$ 1 Z) 0 # Component number: 2 0) expdisk 1) $x_2$ $y_2$ 1 1 3) $mauto_2$ 1 4) $flux_rad0_5_2$ 1 5) 1.00000 0 6) 0.00000 0 7) 0.00000 0 8) 0.00000 0 9) $axes_rate_2$ 1 10) $theta_2$ 1 Z) 0 # Component number: 3 0) sersic 1) $x_3$ $y_3$ 1 1 3) $mauto_3$ 1 4) $flux_rad0_5_3$ 1 5) 1.50000 1 6) 0.00000 0 7) 0.00000 0 8) 0.00000 0 9) 0.25 1 10) $theta_3$ 1 Z) 0 # Component number: 4 0) sky # Component type 1) $skybackground$ 1 # Sky background at center of fitting region [ADUs] 2) 0.0000 0 # dsky/dx (sky gradient in x) [ADUs/pix] 3) 0.0000 0 # dsky/dy (sky gradient in y) [ADUs/pix] Z) 0 2012-07-12 12:07:33.484 UTC Parameter_reportresultsSelect_Rows_with_barvoTable0filter0outputTable00org.purl.wf4ever.astrotavernastilts-activity0.9org.purl.wf4ever.astrotaverna.tpipe.SelectRowsActivity String net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeSelect_Rows_without_barvoTable0filter0outputTable00org.purl.wf4ever.astrotavernastilts-activity0.9org.purl.wf4ever.astrotaverna.tpipe.SelectRowsActivity String net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeMerge_Check_filler_reportstringlist1concatenated00net.sf.taverna.t2.activitieslocalworker-activity1.4net.sf.taverna.t2.activities.localworker.LocalworkerActivity stringlist 1 l('text/plain') java.lang.String true seperator 0 'text/plain' java.lang.String true concatenated 0 'text/plain' 0 workflow org.embl.ebi.escience.scuflworkers.java.StringListMerge net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeMerge_String_Liststringlist1concatenated00net.sf.taverna.t2.activitieslocalworker-activity1.4net.sf.taverna.t2.activities.localworker.LocalworkerActivity stringlist 1 l('text/plain') java.lang.String true seperator 0 'text/plain' java.lang.String true concatenated 0 'text/plain' 0 workflow org.embl.ebi.escience.scuflworkers.java.StringListMerge net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeNested_workflow_Fill_templates_without_barvotable0columnNameWithConfigFilePath0vocabulary0template0Check_template_filler_report00Template_filler_report00net.sf.taverna.t2.activitiesdataflow-activity1.4net.sf.taverna.t2.activities.dataflow.DataflowActivitynet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeNested_workflow_fill_templates_with_barvotable0template0vocabulary0columnNameWithConfigFilePath0Template_filler_report00Check_template_filler_report00net.sf.taverna.t2.activitiesdataflow-activity1.4net.sf.taverna.t2.activities.dataflow.DataflowActivitynet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeSelect_Rows_with_barvoTablevotableSelect_Rows_with_barfilterpartitioningFilter2Select_Rows_without_barvoTablevotableSelect_Rows_without_barfilterPartitioningFilter1Nested_workflow_Fill_templates_without_barvotableSelect_Rows_without_baroutputTableNested_workflow_Fill_templates_without_barcolumnNameWithConfigFilePathcolumnNameWithConfigFileNested_workflow_Fill_templates_without_barvocabularyvocabularyNested_workflow_Fill_templates_without_bartemplatetemplate1Nested_workflow_fill_templates_with_barvotableSelect_Rows_with_baroutputTableNested_workflow_fill_templates_with_bartemplatetemplate2Nested_workflow_fill_templates_with_barvocabularyvocabularyNested_workflow_fill_templates_with_barcolumnNameWithConfigFilePathcolumnNameWithConfigFileMerge_Check_filler_reportstringlistNested_workflow_Fill_templates_without_barCheck_template_filler_reportMerge_Check_filler_reportstringlistNested_workflow_fill_templates_with_barCheck_template_filler_reportMerge_String_ListstringlistNested_workflow_Fill_templates_without_barTemplate_filler_reportMerge_String_ListstringlistNested_workflow_fill_templates_with_barTemplate_filler_reportParameter_reportMerge_Check_filler_reportconcatenatedresultsMerge_String_Listconcatenated 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