Run_sextractor_usingColumnNameImageFile00 imagen 2012-07-31 12:22:02.936 UTC ColumnNameWithConfigFile00 sex 2012-07-31 12:23:18.818 UTC votable00 <?xml version='1.0'?> <VOTABLE version="1.1" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.ivoa.net/xml/VOTable/v1.1 http://www.ivoa.net/xml/VOTable/v1.1" xmlns="http://www.ivoa.net/xml/VOTable/v1.1"> <!-- ! VOTable written by STIL version 3.0-3 (uk.ac.starlink.votable.VOTableWriter) ! at 2012-07-24T06:49:12 !--> <RESOURCE> <TABLE name="/home/julian/Documents/wf4ever/showcase61.2goldenExampler/2GE/workflows/cat_sex_total_noback.txt" nrows="3"> <FIELD arraysize="15" datatype="char" name="imagen"/> <FIELD arraysize="1" datatype="char" name="banda"/> <FIELD arraysize="85" datatype="char" name="cat"/> <FIELD arraysize="85" datatype="char" name="sex"/> <FIELD arraysize="18" datatype="char" name="checkimage_name"/> <FIELD arraysize="88" datatype="char" name="galfit"/> <FIELD arraysize="92" datatype="char" name="galfit_exp"/> <FIELD arraysize="92" datatype="char" name="galfit2nd"/> <FIELD arraysize="92" datatype="char" name="galfitgal"/> <FIELD arraysize="45" datatype="char" name="psf"/> <FIELD arraysize="20" datatype="char" name="model"/> <FIELD datatype="short" name="CIG"> <VALUES null='-32768'/> </FIELD> <FIELD datatype="float" name="ra_gal"/> <FIELD datatype="float" name="dec_gal"/> <FIELD datatype="float" name="mag_zeropoint"/> <FIELD datatype="float" name="satur_level"/> <FIELD datatype="float" name="gain"/> <FIELD datatype="float" name="mB"/> <FIELD datatype="float" name="mBcorr"/> <FIELD datatype="short" name="nx"> <VALUES null='-32768'/> </FIELD> <FIELD datatype="short" name="ny"> <VALUES null='-32768'/> </FIELD> <FIELD datatype="float" name="zp"/> <FIELD datatype="short" name="xconvsize"> <VALUES null='-32768'/> </FIELD> <FIELD datatype="short" name="yconvsize"> <VALUES null='-32768'/> </FIELD> <FIELD datatype="short" name="bar"> <VALUES null='-32768'/> </FIELD> <DATA> <TABLEDATA> <TR> <TD>fbCIG0011_g.fit</TD> <TD>g</TD> <TD>/home/julian/Documents/wf4ever/showcase61.2goldenExampler/2GE/workflows/CIG0011_g.cat</TD> <TD>/home/julian/Documents/wf4ever/showcase61.2goldenExampler/2GE/workflows/CIG0011_g.sex</TD> <TD>CIG0011_g_seg.fits</TD> <TD>/home/julian/Documents/wf4ever/showcase61.2goldenExampler/2GE/workflows/CIG0011_g.galfit</TD> <TD>/home/julian/Documents/wf4ever/showcase61.2goldenExampler/2GE/workflows/CIG0011_g_exp.galfit</TD> <TD>/home/julian/Documents/wf4ever/showcase61.2goldenExampler/2GE/workflows/CIG0011_g_BuD.galfit</TD> <TD>/home/julian/Documents/wf4ever/showcase61.2goldenExampler/2GE/workflows/CIG0011_g_gal.galfit</TD> <TD>/home/julian/Documents/psf/CIG0011_g_psf.fits</TD> <TD>CIG0011_g_model.fits</TD> <TD>11</TD> <TD>3.63404435</TD> <TD>-0.73569511</TD> <TD>28.337</TD> <TD>62160</TD> <TD>3.8550</TD> <TD>14.8</TD> <TD>14.11</TD> <TD>950</TD> <TD>951</TD> <TD>24.0077</TD> <TD>95</TD> <TD>95</TD> <TD>0</TD> </TR> <TR> <TD>fbCIG0011_i.fit</TD> <TD>i</TD> <TD>/home/julian/Documents/wf4ever/showcase61.2goldenExampler/2GE/workflows/CIG0011_i.cat</TD> <TD>/home/julian/Documents/wf4ever/showcase61.2goldenExampler/2GE/workflows/CIG0011_i.sex</TD> <TD>CIG0011_i_seg.fits</TD> <TD>/home/julian/Documents/wf4ever/showcase61.2goldenExampler/2GE/workflows/CIG0011_i.galfit</TD> <TD>/home/julian/Documents/wf4ever/showcase61.2goldenExampler/2GE/workflows/CIG0011_i_exp.galfit</TD> <TD>/home/julian/Documents/wf4ever/showcase61.2goldenExampler/2GE/workflows/CIG0011_i_BDB.galfit</TD> <TD>/home/julian/Documents/wf4ever/showcase61.2goldenExampler/2GE/workflows/CIG0011_i_gal.galfit</TD> <TD>/home/julian/Documents/psf/CIG0011_i_psf.fits</TD> <TD>CIG0011_i_model.fits</TD> <TD>11</TD> <TD>3.63404435</TD> <TD>-0.73569511</TD> <TD>27.731</TD> <TD>51453</TD> <TD>6.5650</TD> <TD>14.8</TD> <TD>14.11</TD> <TD>950</TD> <TD>950</TD> <TD>23.402</TD> <TD>95</TD> <TD>95</TD> <TD>1</TD> </TR> <TR> <TD>fbCIG0011_r.fit</TD> <TD>r</TD> <TD>/home/julian/Documents/wf4ever/showcase61.2goldenExampler/2GE/workflows/CIG0011_r.cat</TD> <TD>/home/julian/Documents/wf4ever/showcase61.2goldenExampler/2GE/workflows/CIG0011_r.sex</TD> <TD>CIG0011_r_seg.fits</TD> <TD>/home/julian/Documents/wf4ever/showcase61.2goldenExampler/2GE/workflows/CIG0011_r.galfit</TD> <TD>/home/julian/Documents/wf4ever/showcase61.2goldenExampler/2GE/workflows/CIG0011_r_exp.galfit</TD> <TD>/home/julian/Documents/wf4ever/showcase61.2goldenExampler/2GE/workflows/CIG0011_r_BuD.galfit</TD> <TD>/home/julian/Documents/wf4ever/showcase61.2goldenExampler/2GE/workflows/CIG0011_r_gal.galfit</TD> <TD>/home/julian/Documents/psf/CIG0011_r_psf.fits</TD> <TD>CIG0011_r_model.fits</TD> <TD>11</TD> <TD>3.63404435</TD> <TD>-0.73569511</TD> <TD>28.089</TD> <TD>50631</TD> <TD>4.6000</TD> <TD>14.8</TD> <TD>14.11</TD> <TD>950</TD> <TD>950</TD> <TD>23.7596</TD> <TD>95</TD> <TD>95</TD> <TD>0</TD> </TR> </TABLEDATA> </DATA> </TABLE> </RESOURCE> </VOTABLE> 2012-07-26 11:05:14.581 UTC Precedence00Tool_STDOUTTool_STDERRCreate_sextractor_scriptvotable0columnNameImageFile0columnNameWithConfigFile0script00 It creates a script that call sextractor (sex) for every row in the votable. This beanshell requires stil library 2012-09-07 12:24:12.702 UTC net.sf.taverna.t2.activitiesbeanshell-activity1.4net.sf.taverna.t2.activities.beanshell.BeanshellActivity votable 0 text/plain java.lang.String true columnNameWithConfigFile 0 text/plain java.lang.String true columnNameImageFile 0 text/plain java.lang.String true script 0 0 workflow stil.jar net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeRunSextractorscript0STDOUT00STDERR00 It runs the script that receives as input. In order to make the script runnable, it uses chmod 2012-09-07 12:21:01.896 UTC net.sf.taverna.t2.activitiesexternal-tool-activity1.4net.sf.taverna.t2.activities.externaltool.ExternalToolActivity 789663B8-DA91-428A-9F7D-B3F3DA185FD4 default local <?xml version="1.0" encoding="UTF-8"?> <localInvocation><shellPrefix>/bin/sh -c</shellPrefix><linkCommand>/bin/ln -s %%PATH_TO_ORIGINAL%% %%TARGET_NAME%%</linkCommand></localInvocation> 2384f25b-a4c9-47db-ada2-2eafbdd03c2a chmod +x script ./script 1200 1800 script script true false false UTF-8 false false false false true true 0 false net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeCreate_sextractor_scriptvotablevotableCreate_sextractor_scriptcolumnNameImageFileColumnNameImageFileCreate_sextractor_scriptcolumnNameWithConfigFileColumnNameWithConfigFileRunSextractorscriptCreate_sextractor_scriptscriptTool_STDOUTRunSextractorSTDOUTTool_STDERRRunSextractorSTDERR 98a92104-ece1-45b7-a8c7-4fff6ac130d4 2012-09-07 12:22:03.186 UTC 2396f4ec-735e-4732-8b30-28ed175d24aa 2012-06-25 11:21:38.371 UTC 3043cb5b-075e-4f23-b6a1-f609c7c45315 2012-07-10 10:38:05.287 UTC 4147d233-df63-4a36-b486-33986cbfaf3b 2012-06-25 11:36:07.803 UTC b8b10042-0543-468e-b922-2f966cb99678 2012-06-28 09:53:23.543 UTC 6291a728-326a-4270-b170-9d53c1240a8f 2012-06-28 08:40:56.869 UTC 744f6824-e6bc-44d0-ac52-9c0c4b2b8702 2012-07-26 11:25:22.173 UTC 9163a693-35c0-4feb-8c06-e4b949c25cf6 2012-06-25 11:37:26.902 UTC 3cc1057b-3bd8-40d5-902f-83992c391069 2012-07-10 13:36:44.762 UTC 54b9b289-4c20-48c1-96b7-cd875b947b95 2012-06-25 11:29:43.926 UTC 24939235-5875-447c-a5e9-049d7f1be1c5 2012-07-31 12:22:16.716 UTC 26c08e76-efa4-4741-943c-ddbb42aced92 2012-06-28 10:21:18.155 UTC 13ac32c9-1867-4e7e-9bc9-32dc778fe627 2012-06-28 10:17:00.521 UTC 937b9787-a6c5-4945-ac2a-825f07b6246f 2012-07-03 07:14:47.676 UTC f7dcf557-e63b-4a15-b31b-e800e694ed34 2012-07-24 08:54:32.736 UTC 95b3bbf0-bd41-4c4a-92f7-4032681fd52a 2012-07-02 08:01:23.279 UTC d33e2115-73c7-4ce3-a372-f763b6ce309e 2012-07-25 07:49:16.302 UTC 02e33651-21dd-4ab7-b7de-72d78b4750d4 2012-06-28 10:15:37.319 UTC 41e33b3c-5f25-41f9-b28e-9240f49dd681 2012-07-10 10:30:10.237 UTC f3ba6979-742a-426d-be35-3db371679bd6 2012-06-26 13:21:32.857 UTC 07ce0371-911c-4c21-bc03-e075a4727dd2 2012-07-31 12:13:43.448 UTC caed029a-0772-459e-b413-2d929fd6cef2 2012-06-28 09:36:22.361 UTC baeaf8a2-b974-4e40-9528-7f2edef21a62 2012-06-26 13:25:57.130 UTC It runs sextractor and adjust the paramenters specified. This workflow has a dependency on the stil library (http://www.star.bris.ac.uk/~mbt/stil/). Sextractor is called by an bash script as 'sex'. Sextractor is called for every row in the votable. Columns where the configuration file and the image file name are defined must be especified. These files should be accesibles from taverna. ExperimentFolder provides the root folder for the experiment. If the configuration files contain references to other files, they must be accesible from taverna. 2012-07-26 11:21:53.289 UTC c1e31812-891c-40cc-93eb-7bf136e5b29b 2012-07-25 07:31:29.256 UTC aae6b426-cdf3-4e48-9c5d-09cda2522fb0 2012-07-10 10:25:32.685 UTC 525e1636-8c28-4b59-b057-c3f76b11134a 2012-06-28 12:15:03.701 UTC 3319ead4-00e8-4a9e-8799-77ce22b36249 2012-06-28 12:09:51.744 UTC c93da19f-d183-46f3-aa4e-42ec7ed0a99c 2012-07-25 07:28:26.834 UTC 8c783633-673f-46dc-af45-4d57c57af31d 2012-07-10 13:37:49.41 UTC 0ce443f6-43d4-4a7b-ba5f-858ac5a07662 2012-06-25 13:00:44.644 UTC 5404d638-aa7f-4c7b-8f10-d4615d24ac94 2012-06-26 13:23:18.955 UTC 41ba73e5-4586-48ab-aa07-bda62d8c4eff 2012-07-23 08:36:51.646 UTC 69d2c52d-d726-4192-a05d-e8f1208a9a06 2012-06-25 11:17:38.723 UTC 46c56064-01ae-4eb8-9a8d-3f58d4e59d77 2012-07-23 08:37:22.719 UTC 36b9a190-05ed-4d33-a074-2a91db08d0a3 2012-09-07 12:24:20.804 UTC 5d6af32a-4820-4cb3-ad31-c49f876d58bb 2012-07-02 08:25:20.85 UTC 82e1735a-1b42-4ec2-84de-d3d06c1f3291 2012-06-26 12:38:48.854 UTC 85ef16e0-1255-4864-a35f-01b56e804a90 2012-06-25 11:20:14.380 UTC 0d6c1a82-25f6-498c-a6d2-b7534d501835 2012-06-28 12:07:13.764 UTC ca5aedab-ad1f-4305-90ee-557ad4f70d7b 2012-06-25 11:21:11.391 UTC 25870456-d217-4a7c-84bc-3136a29369c8 2012-07-02 10:26:25.624 UTC 54a836b6-78b5-49af-8c88-cbaa38690216 2012-06-25 10:50:44.520 UTC ad0f1599-176d-4d3c-9990-185eebe8a84e 2012-06-28 12:08:34.567 UTC 72d08c8e-b3f7-413e-ab53-88e8132140e4 2012-06-28 08:55:11.523 UTC 3909b1ca-dc18-44ff-86e2-2519bfd5d8b8 2012-07-26 11:22:10.460 UTC 920cb5e0-1a2a-41ca-8fa8-5063a4913e09 2012-06-25 13:13:40.746 UTC e2efad64-69ee-422d-8e94-f1f9fbf845fd 2012-06-25 10:42:00.424 UTC b0eaa859-41e1-4316-a8e3-92c7f1af328f 2012-06-26 12:39:02.622 UTC 47f0d709-437b-4ded-80ab-d5e4a94ac93a 2012-07-02 08:15:11.580 UTC 780252cc-c3cf-4fbc-a59e-dc22b57b8f05 2012-07-11 07:18:53.378 UTC f7d0eacd-8b3d-485d-8427-d2f0e0255085 2012-06-28 12:10:33.171 UTC ff41fd33-70c8-4f8f-b141-9b42e7e6f87f 2012-06-28 08:36:41.213 UTC 3e360bf9-386f-468c-bbfd-710046e6cff6 2012-06-27 10:05:49.887 UTC bac589f2-e74c-4396-9239-5c467c3c0b59 2012-06-26 12:47:26.400 UTC 22acaf37-bf74-4e58-8e73-2678725beba7 2012-06-28 12:10:40.499 UTC 1e0b26cf-c3d2-4a70-ae92-d2f7995e1809 2012-06-28 12:05:08.712 UTC 786bd227-8c48-465e-a5e5-e826ecaffec1 2012-06-26 13:18:29.985 UTC c8fe7315-8964-4e1d-bb7b-dd194eb530e7 2012-06-26 12:58:47.379 UTC 1bab3ff0-3221-4ec1-abeb-471537f4efc3 2012-06-28 10:20:43.402 UTC Run sextractor using a votable 2012-07-26 11:25:03.281 UTC Julián Garrido 2012-07-26 11:09:56.694 UTC 4a2e9df1-9d25-4e16-b23d-f27d6c5823b4 2012-07-10 10:24:34.706 UTC 818f8f20-80cb-4ef3-972a-d2b1c834921a 2012-06-25 11:36:51.476 UTC 141eb5e0-0e41-4635-ac15-67ec1817c1b2 2012-06-28 09:00:48.942 UTC 0afb42b7-533f-45d0-95d4-2b4c6c549a20 2012-06-25 11:22:01.548 UTC 78410155-773f-4d1f-8a17-896cc99c296f 2012-06-25 13:12:55.751 UTC bcac6117-e659-43ac-afe4-41f6a365c28d 2012-07-11 07:15:08.130 UTC de4de229-d42e-45df-8fa7-c7b4fb90ed17 2012-07-02 08:23:51.795 UTC 5a6fc30b-1fb0-48dd-95d1-9c8d643333f1 2012-07-26 11:05:20.869 UTC 7db18bb6-2d6e-49ed-ba2d-26887279c999 2012-07-31 12:23:22.832 UTC