17
44592504
mus_musculus
19592504
http://xml.nig.ac.jp/wsdl/Ensembl.wsdl
getGeneInfo
http://phoebus.cs.man.ac.uk:8081/axis/EnsemblListner.jws?wsdl
lister
Retrieves a list of Ensembl genes for a given species, chromosome and position
http://phoebus.cs.man.ac.uk:1977/axis/services/qtl_analysis.getgenesbyspecies
Retrieves the current databases from ENSEMBL for a species
http://phoebus.cs.man.ac.uk:1977/axis/services/qtl_analysis.getcurrentdatabase
gene_name
http://phoebus.cs.man.ac.uk:8081/axis/EnsemblListner.jws?wsdl
lister
String[] split = input.split("\n");
Vector nonEmpty = new Vector();
for (int i = 0; i < split.length; i++)
{
String trimmed = split[i].trim();
String[] trimmedSplit = trimmed.split("\t");
nonEmpty.add(trimmedSplit[3].trim());
}
String output = "";
for (int i = 0; i < nonEmpty.size(); i++)
{
output = output + (String) (nonEmpty.elementAt(i) + "\n");
}
input
output
extract information from geneGeneInfo processor at http://xml.nig.ac.jp/wsdl/Ensembl.wsdl
http://phoebus.cs.man.ac.uk:1977/axis/services/seq_analysis.parse_ddbj_gene_info