Find workflow ancestors

Created: 2012-05-08 11:15:30 Last updated: 2012-07-09 10:56:06

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Given a t2flow file (Taverna 2 workflow), extract ancestor workflow UUIDs and search myExperiment for matching workflow entries.

Note that this will also match the workflow itself and nested workflows, but does not match against other workflows having the same ancestors (but newer UUIDs).

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Option 1:

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https://myexperiment.org/workflows/2899/download?version=2
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Workflow Components

Authors (1)

Titles (1)

Descriptions (1)

Dependencies (0)

Inputs (1)

Name	Description
t2flow	A t2flow workflow Try Set URL and http://www.myexperiment.org/workflows/16/download?version=7 (not the URI as a string).

Processors (4)

Name	Type	Description
myExpeirment_find_workflows_with_uuid	rest
find_previous_t2flow_uuids	xpath	Xpath Expression /default:workflow/default:dataflow/default:annotations/default:annotation_chain_2_2/net.sf.taverna.t2.annotation.AnnotationChainImpl/annotationAssertions/net.sf.taverna.t2.annotation.AnnotationAssertionImpl/annotationBean/identification
sparql_result_uris	xpath	Xpath Expression /default:sparql/default:results/default:result/default:binding/default:uri
Flatten_List	localworker	Script flatten(inputs, outputs, depth) { for (i = inputs.iterator(); i.hasNext();) { element = i.next(); if (element instanceof Collection && depth > 0) { flatten(element, outputs, depth - 1); } else { outputs.add(element); } } } outputlist = new ArrayList(); flatten(inputlist, outputlist, 1);

Beanshells (0)

Outputs (2)

Name	Description
workflows
myExpeirment_find_workflows_with_uuid_actualURL

Datalinks (6)

Source	Sink
find_previous_t2flow_uuids:nodelist	myExpeirment_find_workflows_with_uuid:uuid
t2flow	find_previous_t2flow_uuids:xml_text
myExpeirment_find_workflows_with_uuid:responseBody	sparql_result_uris:xml_text
sparql_result_uris:nodelist	Flatten_List:inputlist
Flatten_List:outputlist	workflows
myExpeirment_find_workflows_with_uuid:actualURL	myExpeirment_find_workflows_with_uuid_actualURL

Coordinations (0)

Information Workflow Type

Taverna 2

Information Uploader

Stian Soiland-Reyes

Information License

All versions of this Workflow are licensed under:

Information Version 2 (latest) (of 2)

Information Credits (1)

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Stian Soiland-Reyes

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None

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Information Statistics

3309 viewings

1512 downloads

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Citations (0)

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Version History

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Find workflow ancestors

Created by Stian Soiland-Reyes on Tuesday 08 May 2012 11:15:30 (UTC)

Last edited by Stian Soiland-Reyes on Tuesday 08 May 2012 11:19:36 (UTC)
Find workflow ancestors

Created by Stian Soiland-Reyes on Monday 09 July 2012 10:56:06 (UTC)

Revision comment:

Updated to work as SPARQL no longer has typing mecontrib:Workflow for some reason