complete_test.xml
Created: 2008-07-12 09:58:25
Last updated: 2008-07-12 09:58:43
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Workflow Components
Processors (15)
| Name |
Type |
Description |
| array_name |
stringconstant |
|
| regex1 |
stringconstant |
|
| chromosome |
stringconstant |
|
| comma |
stringconstant |
|
| merge_string_list |
local |
|
| remove_duplicates |
beanshell |
|
| end |
stringconstant |
|
| start |
stringconstant |
|
| species |
stringconstant |
|
| Ensembl_gene_info |
workflow |
|
| split_by_regex |
local |
|
| getcurrentdatabase |
soaplabwsdl |
Retrieves the current databases from ENSEMBL for a species |
| getgenesbyspecies |
soaplabwsdl |
Retrieves a list of Ensembl genes for a given species, chromosome and position |
| Probeset_in_QTL |
workflow |
|
| Probesets_to_genes |
workflow |
|
Beanshells (1)
| Name |
Description |
Inputs |
Outputs |
| remove_duplicates |
|
probeset_genes
genes_by_species
|
output
|
Outputs (5)
| Name |
Description |
| current_database |
|
| genes_in_region |
|
| gene_info |
|
| probesets_in_qtl |
|
| genes_from_probesets |
|
Links (27)
| Source |
Sink |
| Probesets_to_genes:genes_from_probeset |
remove_duplicates:probeset_genes |
| getcurrentdatabase:output |
getgenesbyspecies:database |
| getgenesbyspecies:output |
remove_duplicates:genes_by_species |
| Ensembl_gene_info:gene_info |
gene_info |
| Probeset_in_QTL:probesets_in_qtl |
probesets_in_qtl |
| Probeset_in_QTL:probesets_in_qtl |
split_by_regex:string |
| array_name:value |
Probeset_in_QTL:array_name |
| chromosome:value |
Probeset_in_QTL:chromosome |
| chromosome:value |
Probesets_to_genes:chromosome |
| chromosome:value |
getgenesbyspecies:chromo |
| comma:value |
merge_string_list:seperator |
| end:value |
Probeset_in_QTL:end |
| end:value |
Probesets_to_genes:end |
| end:value |
getgenesbyspecies:end |
| getcurrentdatabase:output |
Probeset_in_QTL:database |
| getcurrentdatabase:output |
Probesets_to_genes:database |
| getgenesbyspecies:output |
genes_in_region |
| merge_string_list:concatenated |
Probesets_to_genes:probeset_list |
| regex1:value |
split_by_regex:regex |
| remove_duplicates:output |
Ensembl_gene_info:genes_in_region |
| species:value |
getcurrentdatabase:species |
| split_by_regex:split |
merge_string_list:stringlist |
| start:value |
Probeset_in_QTL:start |
| start:value |
Probesets_to_genes:start |
| start:value |
getgenesbyspecies:start |
| Probesets_to_genes:genes_from_probeset |
genes_from_probesets |
| getcurrentdatabase:output |
current_database |
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