Get Alternative Gene Names for a Drosophila Gene

Created: 2012-05-04 11:58:27 Last updated: 2012-05-04 11:59:58

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This is a simple workflow testing running a restful service in Taverna. This restful service http://www.open-biomed.org.uk/service/flybase/features/name/{name} is part of the flykit/flybase services http://code.google.com/p/open-biomed/wiki/Flybase, which is built using the Talis Puelia Linked Data API (http://code.google.com/p/puelia-php/). We want to use this simple workflow to test the idea of bridging linked data and scientific workflows using Restful services. A test input gene name can be: schuy, Act5C or Adh.

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Inputs (1)

Name	Description
gene

Processors (2)

Name	Type	Description
getFeatureNamesForGene	rest
getAnyNamesForGene	xpath	Xpath Expression /result/items/item/altLabel/item

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Outputs (1)

Name	Description
fbgn

Datalinks (3)

Source	Sink
gene	getFeatureNamesForGene:name
getFeatureNamesForGene:responseBody	getAnyNamesForGene:xml_text
getAnyNamesForGene:nodelist	fbgn

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Taverna 2

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Junzhao

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Junzhao

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Get Alternative Gene Names for a Drosophila Gene

Created by Junzhao on Friday 04 May 2012 11:58:27 (UTC)

Last edited by Junzhao on Friday 04 May 2012 11:59:58 (UTC)