Match concept profiles

Created: 2011-12-02 09:07:34 Last updated: 2014-07-14 13:31:23

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Purpose of workflow: The workflow can be used to match a set of concept profiles with another set of concept profiles.

Result: A list of concepts ordered by their match to the query concept profiles.

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Workflow Components

Authors (1)

Titles (1)

Descriptions (1)

Dependencies (0)

Inputs (3)

Name	Description
Cutoff	The number of shown resulting matched and queried concepts.
Match_concept_set	The ConceptSet to match against. Needs to be a comma-separated list of concept IDs.
Query_concept_set	The query ConceptSet. Needs to be a comma-separated list of concept IDs.

Processors (4)

Name	Type	Description
getSimilarConceptProfiles	wsdl	The Web service operation takes two lists of concept identifiers as input (comma-separated values) and calculates the matching score between the concept profiles of the concepts according to the scaled inner product. Wsdl http://ws.biosemantics.org/ConceptProfileMiningService?wsdl Wsdl Operation getSimilarConceptProfiles
getSimilarConceptProfiles_input	xmlsplitter
getSimilarConceptProfiles_output	xmlsplitter
getSimilarConceptProfiles_MatchingResult	xmlsplitter

Beanshells (0)

Outputs (3)

Name	Description
Match_result_list	Ranked list of matched concept IDs.
Summed_similarity_score	Similarity score summed up for each concept profile match (see output port Match_result_list for the concepts).
Similarity_score_per_concept	The similarity score for each query concept against each match concept (in XML).

Datalinks (9)

Source	Sink
getSimilarConceptProfiles_input:output	getSimilarConceptProfiles:parameters
Cutoff	getSimilarConceptProfiles_input:cutoffValue
Query_concept_set	getSimilarConceptProfiles_input:queryConceptProfileList
Match_concept_set	getSimilarConceptProfiles_input:matchConceptProfileList
getSimilarConceptProfiles:parameters	getSimilarConceptProfiles_output:input
getSimilarConceptProfiles_output:MatchingResult	getSimilarConceptProfiles_MatchingResult:input
getSimilarConceptProfiles_MatchingResult:MatchConceptProfileList	Match_result_list
getSimilarConceptProfiles_MatchingResult:SummedSimilarityScoreList	Summed_similarity_score
getSimilarConceptProfiles_MatchingResult:SimilarityScoreLists	Similarity_score_per_concept

Coordinations (0)

Information Workflow Type

Taverna 2

Information Uploader

Marco Roos

Information License

All versions of this Workflow are licensed under:

Information Version 6 (latest) (of 6)

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Information Tags (14)

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Information Shared with Groups (1)

BioSemantics

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Information Statistics

4251 viewings

1624 downloads

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Version History

In chronological order:

Match concept profiles

Created by Marco Roos on Friday 02 December 2011 09:07:34 (UTC)
Match concept profiles

Created by Kristina Hettne on Tuesday 26 June 2012 12:59:33 (UTC)

Revision comment:

Minor modifications.
Match concept profiles

Created by Kristina Hettne on Wednesday 18 July 2012 13:56:02 (UTC)

Revision comment:

Added annotations.
Match concept profiles

Created by Kristina Hettne on Friday 14 September 2012 09:57:48 (UTC)
Match concept profiles

Created by Kristina Hettne on Tuesday 05 February 2013 21:09:50 (UTC)
Match concept profiles

Created by Kristina Hettne on Monday 14 July 2014 13:31:23 (UTC)

Revision comment:

Edited examples to reflect latest concept database update. Added extra output port for the individual similarity scores.

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Purpose of workflow: This workflow takes two concept ids as input and returns the top ranking "B" concepts according to Swanson's ABC model of discovery, where the relationships AB and BC are known and reported in the literature, and the implicit relationship AC is a putative new discovery. It might also be the case that AC is already known. In that case AC does not represent a new discovery but will still be returned (see workflow example values). The B concepts are returned sorted on the pe...

Created: 2012-02-07 | Last updated: 2014-07-14

Credits: Reinout van Schouwen

Match concept profiles

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