Parse UniProt text file

Created: 2007-10-03 18:36:08 Last updated: 2009-12-03 16:36:54

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This workflow performs a search through the SRS linking system to find the text files for a particular UniProt identifier. This UniProt text file is then parsed to extract a small list to summarise the file, primarily consisting of external identifiers.

Example input for this workflow is: O35613

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Workflow Components

Inputs (1)

Name	Description
UniProt_id

Processors (3)

Name	Type	Description
fieldName	stringconstant
parse_uniprot	soaplabwsdl	Extract information from a Uniprot text file including PubMed, InterPro, Pfam and other related accession numbers
Uniprot_search	soaplabwsdl	To be added

Beanshells (0)

Outputs (1)

Name	Description
parsed_data

Links (4)

Source	Sink
UniProt_id	Uniprot_search:searchterm
Uniprot_search:result	parse_uniprot:file_direct_data
fieldName:value	Uniprot_search:fieldname
parse_uniprot:output	parsed_data

Coordinations (0)

Information Workflow Type

Taverna 1

Information Uploader

Paul Fisher

Information License

All versions of this Workflow are licensed under:

Information Version 2 (latest) (of 2)

Information Credits (0)

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None

Information Attributions (0)

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None

Information Tags (1)

Uploader tags

uniprot

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Information Shared with Groups (0)

None

Information Featured In Packs (0)

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Information Attributed By (0)

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Information Favourited By (1)

4dot

Information Statistics

3105 viewings

2770 downloads

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Citations (0)

None

Version History

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Parse UniProt text file

Created by Paul Fisher on Wednesday 03 October 2007 18:36:08 (UTC)
Parse UniProt text file

Created by Paul Fisher on Wednesday 03 October 2007 18:36:08 (UTC)

Last edited by Paul Fisher on Thursday 03 December 2009 16:36:55 (UTC)

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