Get homologous from an NCBI homoloGene.data file using a list of UniProt accessions

None

List split = new ArrayList();
if (!string.equals("")) {
	String regexString = ",";
	if (regex != void) {
		regexString = regex;
	}
	String[] result = string.split(regexString);
	for (int i = 0; i < result.length; i++) {
		split.add(result[i]);
	}
}

Name	Description
taxonomyAcc	Taxonomy accessions
uniprotAccessions	UniProt Protein accessions. Comma-separated values (CSV)
homologeneNcbiFile	Download homologene.data file from NCBI. ftp://ftp.ncbi.nlm.nih.gov/pub/HomoloGene/current/

Name	Inputs	Outputs
getHomologousFrom_homoloGene	homologeneNcbiFile queryAccs specie	listOfResults
build_mapping_table	originalAccs crossReferenceAccs databaseNames taxonIds accessionVersions	results
newLine		newline
filterOutBlankResults	list1	list2
Beanshell	list1	list2
Beanshell_2	list1	list2
newLine_2		newline
Beanshell_2_2	list1	list2

Name	Description
homologous
ListOfUniprotAccessions

Source	Sink
taxonomyAcc	Get_homologous_from_NCBI_homoloGene_using_one_UniProt_accession:taxonomyAcc
Split_string_into_string_list_by_regular_expression:split	Get_homologous_from_NCBI_homoloGene_using_one_UniProt_accession:proteinAccession
homologeneNcbiFile	Get_homologous_from_NCBI_homoloGene_using_one_UniProt_accession:homologeneNcbiFile
regex_value:value	Split_string_into_string_list_by_regular_expression:regex
uniprotAccessions	Split_string_into_string_list_by_regular_expression:string
Get_homologous_from_NCBI_homoloGene_using_one_UniProt_accession:homologous	homologous
Split_string_into_string_list_by_regular_expression:split	ListOfUniprotAccessions

Get homologous from an NCBI homoloGene.data file using a list of UniProt accessions

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