Retrieve Molecular Interactions from PSICQUIC Services for a list of Protein Accessions
Created: 2011-10-05 00:40:20
Last updated: 2011-10-05 00:40:22
Retrieve Molecular Interactions from PSICQUIC Services for a list of Protein Accessions in PSI-MITAB format
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Workflow Components
Authors (1)
Titles (1)
Retrieve Molecular Interactions from PSICQUIC Services for a list of Protein Accessions |
Descriptions (1)
Retrieve Molecular Interactions from PSICQUIC Services for a list of Protein Accessions in PSI-MITAB format |
Dependencies (0)
Inputs (2)
Name |
Description |
selectedServices |
Set the list of Services you would like to query using comma-separated values. For instance: "IntAct, BioGrid, DIP, MINT". If you want to query all the PSICQUIC Services available in the Registry type the word "all". The names of the PSICQUIC Services available can be found in ... http://www.ebi.ac.uk/Tools/webservices/psicquic/registry/registry?action=ACTIVE
|
listOfProteinAccessions |
Protein accessions as CSV (Comma-separated values)
|
Processors (8)
Name |
Type |
Description |
Define_one_query_and_retrieve_Molecular_Interactions_from_PSICQUIC_Services_registered_in_the_PSICQUIC_registry_ |
workflow |
|
format_value |
stringconstant |
Valuetab25 |
firstResult_value |
stringconstant |
Value0 |
maxResults_value |
stringconstant |
Value2000 |
Split_string_into_string_list_by_regular_expression |
localworker |
ScriptList split = new ArrayList();
if (!string.equals("")) {
String regexString = ",";
if (regex != void) {
regexString = regex;
}
String[] result = string.split(regexString);
for (int i = 0; i < result.length; i++) {
split.add(result[i]);
}
}
|
regex_value |
stringconstant |
Value, |
Concatenate_two_strings |
localworker |
Scriptoutput = string1 + string2; |
string1_value |
stringconstant |
Valueidentifier: |
Beanshells (3)
Name |
Description |
Inputs |
Outputs |
filterServicesByName |
|
name_list
url_list
selectedServices
|
filtered_url_list
filtered_name_list
|
getNamesAndURLs |
|
listOfServices
|
url_list
name_list
|
soapToRest |
|
soapUrl
soapSuffix
restSuffix
|
restUrl
|
Outputs (3)
Name |
Description |
serviceName |
|
MolecularInteractions |
|
psicquicUrl |
|
Datalinks (12)
Source |
Sink |
format_value:value |
Define_one_query_and_retrieve_Molecular_Interactions_from_PSICQUIC_Services_registered_in_the_PSICQUIC_registry_:format |
firstResult_value:value |
Define_one_query_and_retrieve_Molecular_Interactions_from_PSICQUIC_Services_registered_in_the_PSICQUIC_registry_:firstResult |
maxResults_value:value |
Define_one_query_and_retrieve_Molecular_Interactions_from_PSICQUIC_Services_registered_in_the_PSICQUIC_registry_:maxResults |
selectedServices |
Define_one_query_and_retrieve_Molecular_Interactions_from_PSICQUIC_Services_registered_in_the_PSICQUIC_registry_:selectedServices |
Concatenate_two_strings:output |
Define_one_query_and_retrieve_Molecular_Interactions_from_PSICQUIC_Services_registered_in_the_PSICQUIC_registry_:MIQL_query |
regex_value:value |
Split_string_into_string_list_by_regular_expression:regex |
listOfProteinAccessions |
Split_string_into_string_list_by_regular_expression:string |
string1_value:value |
Concatenate_two_strings:string1 |
Split_string_into_string_list_by_regular_expression:split |
Concatenate_two_strings:string2 |
Define_one_query_and_retrieve_Molecular_Interactions_from_PSICQUIC_Services_registered_in_the_PSICQUIC_registry_:serviceName |
serviceName |
Define_one_query_and_retrieve_Molecular_Interactions_from_PSICQUIC_Services_registered_in_the_PSICQUIC_registry_:MolecularInteractions |
MolecularInteractions |
Define_one_query_and_retrieve_Molecular_Interactions_from_PSICQUIC_Services_registered_in_the_PSICQUIC_registry_:psicquicUrl |
psicquicUrl |
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Version 1
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