Nested_Mean_RshellNumLists22 List1: 303 117 308 360 25 385 163 280 399 122 92 243 118 400 96 163 173 286 455 123 List2: 1667 2332 929 684 1837 470 1993 1578 637 833 1423 262 198 342 2441 2129 1873 847 1723 1626 List3: 1318 143 3988 2498 1505 4113 3667 2360 41 983 4879 1988 3578 700 1805 2101 1977 1763 4063 1714 2011-09-20 11:33:50.272 EDT list of lists of values for which the mean and standard deviation will be calculated using R. 2011-09-21 09:16:50.792 EDT NameList11 List of names that will be concatenated using Dot Product for list handling. 2011-09-21 09:18:40.229 EDT Aesthetic Barnacle Cleansed 2011-09-20 11:33:17.575 EDT ResultWorkflow7numeric_input2r_output11 This is a nested workflow that behaves as a service using Rshell to calculate the mean and standard deviation for the numeric vector input from NumLists. The mean and standard deviation are then concatenated to have a single output to be processed by the "nesting" workflow. 2011-09-21 09:21:00.401 EDT net.sf.taverna.t2.activitiesdataflow-activity1.3net.sf.taverna.t2.activities.dataflow.DataflowActivitynet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeConcatenate_two_stringsstring10string20output00 This service takes the output from the nested workflow and concatenates it with a list of names again using Dot Product list handling. 2011-09-21 09:29:01.208 EDT net.sf.taverna.t2.activitieslocalworker-activity1.3net.sf.taverna.t2.activities.localworker.LocalworkerActivity string1 0 'text/plain' java.lang.String true string2 0 'text/plain' java.lang.String true output 0 0 workflow org.embl.ebi.escience.scuflworkers.java.StringConcat UserNameHere 2011-09-20 17:16:31.570 EDT net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeWorkflow7numeric_inputNumListsConcatenate_two_stringsstring1Workflow7r_outputConcatenate_two_stringsstring2NameListResultConcatenate_two_stringsoutput e40f0186-ea4c-4a38-9384-8b581b14db77 2011-09-21 09:27:18.912 EDT fe45267a-d7a9-49b5-8063-8bd2830f0dcd 2011-09-19 23:35:40.883 EDT 1a589bd3-7435-4914-ab7f-f519aa510e0d 2011-09-19 23:42:05.844 EDT Susan Borda 2011-09-21 09:11:00.677 EDT c13bdfd3-e24d-4a36-aaec-983da09a36b8 2011-09-20 00:11:19.231 EDT 3568c1d0-11e7-4b2d-92bf-47de4272cf1f 2011-09-20 16:26:17.479 EDT 66bce6f7-4e69-4fe1-a3be-66bda7691ac1 2010-10-26 12:47:33.405 EDT 783d2763-2b22-4ce3-af1a-b2745d4c6ff6 2011-09-20 16:27:46.801 EDT af30fc26-a63a-4ad3-af16-2b3c70564bda 2011-09-20 00:04:29.201 EDT 35cd1b1c-8681-48e3-b7c3-4808bfd243f8 2011-09-20 13:36:37.788 EDT 0cc38c24-370a-4cd2-97f1-0d03208bc45b 2011-09-20 11:23:22.147 EDT 02a6adb0-54ba-4985-baca-1acdfdcb5475 2011-09-20 17:04:30.559 EDT 19a11a94-904d-42be-b1a3-80f7809b0317 2011-09-19 23:59:56.222 EDT 1911e4ae-1c42-4677-8ab2-76381d9dd5ac 2011-09-20 11:46:21.550 EDT a58fdc5c-d904-4b91-bad2-c18127b3ea5d 2011-09-20 11:49:33.241 EDT 544c4bae-8a48-4858-a98a-8f63d9d8a77f 2011-09-20 11:08:34.796 EDT 9beb9631-72a5-4bad-b95b-0e5686abe803 2010-10-26 12:33:58.1 EDT b6f933f3-4b61-40e5-a141-250f50c96038 2011-09-21 09:29:02.830 EDT d2986f10-dff3-4096-9b0f-9efad5178c2a 2011-09-19 23:27:04.785 EDT 2f472e99-6167-4a13-bd20-da4e4a54eb85 2011-09-20 17:16:38.891 EDT 14def7e4-11cb-4a4b-b18f-ddd5ffbbc04a 2011-09-20 17:03:04.980 EDT da8f144f-40c8-4a65-8abb-af7aabee74f8 2011-09-20 17:11:06.322 EDT 04922420-5765-4de6-af8d-86d2f5dff75f 2011-09-20 17:09:30.293 EDT 5d6eff41-3839-4412-812a-5a597b096566 2011-09-20 17:05:15.414 EDT 3ff5e1c9-7582-4f16-a0ea-974417740461 2011-09-20 17:00:29.269 EDT 592d1c97-fb2b-4cbe-9c6c-3f841395d731 2011-09-20 11:33:52.453 EDT 6948f14b-d568-45d2-9059-f5099fba13f2 2011-09-19 23:54:39.251 EDT 2ca568a9-00da-4da9-8d4e-7d16924808cd 2011-09-19 23:32:33.502 EDT 60613d46-af8a-4428-85d1-a27cd0ab1519 2010-10-26 12:27:11.340 EDT f3177c53-d852-46f4-8174-a6ff354f37eb 2011-09-20 16:23:01.792 EDT b73a5e4a-413a-44d7-8e8e-d58af7c0cb96 2011-09-20 16:56:02.815 EDT 49049072-cccf-49c4-99ce-bd42d76472ca 2011-09-20 11:30:31.196 EDT 2e17bbd0-0e7e-4a85-8fda-c41e0628c0f8 2011-09-19 23:42:52.587 EDT 634a62f2-0153-4ec1-8e4c-f0c4e437c82d 2010-10-26 12:42:57.904 EDT 8b72db19-6921-4558-89d4-36775064f9fb 2011-09-20 17:14:38.899 EDT 1c9b2b1a-35a3-4096-95c2-b3cb15cc157c 2011-09-20 17:13:19.750 EDT 9871e608-a5e2-4e7b-8f42-df5fe76a8856 2011-09-19 23:50:40.208 EDT f50e08fb-f8dd-40ac-81a4-fd6936ab9c6c 2010-10-26 12:26:32.869 EDT 2b616efd-9fb2-48d9-ba6f-dbe7d3bc312b 2011-09-20 00:00:36.220 EDT de8336a2-a964-4fb8-a732-2a296f54c163 2011-09-20 11:25:25.449 EDT c39b456a-fb61-4614-8087-df0d0c779712 2011-09-20 11:57:53.406 EDT 4a4b73a1-00cd-4587-bb73-425c3b1a9fed 2011-09-19 23:28:33.428 EDT 765b7125-c7e6-429b-9495-0d9d1a7b8118 2011-09-20 17:15:23.82 EDT d6db3bf9-7511-46fe-860e-7bfb37d3086c 2011-09-19 23:24:57.251 EDT Nested Mean Rshell 2011-09-21 09:11:20.498 EDT 11d851c7-7bd1-4d8e-88c3-ea0648a9c13f 2011-09-20 16:57:26.296 EDT 527099f1-e6ae-407b-82b8-c2740d0cf337 2011-09-20 11:55:07.104 EDT This workflow uses a nested workflow. The nested workflow takes a list of values and finds the mean and standard deviation for each list. The result of the nested workflow is then concatenated with a list of names using Dot Product for list handling. 2011-09-21 09:16:14.525 EDT d419a332-f24c-42b8-8715-91b3bfa76912 2011-09-20 11:33:20.60 EDT b3fb2828-449d-4662-a300-067edc275f19 2011-09-20 17:01:35.76 EDT Workflow7numeric_input22 255 407 499 230 158 233 206 463 279 351 321 138 234 66 461 242 375 61 250 226 2011-09-19 20:56:50.666 EDT r_outputRshellnumeric_input1mean_result00sd_result00net.sf.taverna.t2.activitiesrshell-activity1.3net.sf.taverna.t2.activities.rshell.RshellActivity numeric_input 1 false mean_result 0 0 sd_result 0 0 false localhost 6311 false false numeric_input DOUBLE_LIST mean_result DOUBLE sd_result DOUBLE net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeConcatenate_two_stringsstring10string20output00net.sf.taverna.t2.activitieslocalworker-activity1.3net.sf.taverna.t2.activities.localworker.LocalworkerActivity string1 0 'text/plain' java.lang.String true string2 0 'text/plain' java.lang.String true output 0 0 workflow org.embl.ebi.escience.scuflworkers.java.StringConcat UserNameHere 2011-09-20 17:08:33.612 EDT net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeRshellnumeric_inputnumeric_inputConcatenate_two_stringsstring1Rshellmean_resultConcatenate_two_stringsstring2Rshellsd_resultr_outputConcatenate_two_stringsoutput 397a4253-6e60-46cc-a4e7-92a3045dfc9a 2011-09-19 13:01:47.374 EDT 14f235c4-e73a-4d9d-a57e-5ee5d7ad488e 2011-09-20 11:53:18.898 EDT 1f775f55-7d7e-4b05-9465-de62ed019219 2011-09-19 13:12:08.773 EDT 8e149157-c6bd-49fa-8ca2-23f827e1ad57 2011-09-20 17:08:39.490 EDT 5eb447ac-5d5c-434c-be02-c9ef0c9e06a6 2011-09-19 20:56:53.701 EDT 0980699c-b3d1-4e10-bae8-a03462f436ef 2011-09-19 13:03:50.81 EDT 1350f013-2170-4501-ae96-8a4aa13f9789 2011-09-19 20:55:54.37 EDT 42c93f0b-c9ef-49dc-a59e-1c4706382c63 2011-09-19 20:45:55.165 EDT c5643b58-4fe8-4686-89a1-43437ae68a47 2011-09-19 13:19:27.807 EDT 6f1d27d5-dcd8-4d1c-bcb3-88736cdbd7a7 2011-09-20 16:57:16.442 EDT 32c183b7-b3a1-472c-86cd-0e2c649cce47 2011-09-19 12:31:02.433 EDT 79ddf4bb-8ba7-45e6-90b1-434a9009c752 2011-09-20 17:10:52.946 EDT 19436a8f-93f3-4586-9b6c-9b3e3f431390 2011-09-20 11:48:53.563 EDT 5bdc4ebb-6c68-446a-a40c-33aee6fcc54f 2011-09-19 20:42:41.329 EDT d0ff04d4-11f4-4d0d-8585-4d650326157d 2011-09-20 17:08:05.850 EDT 470a636e-1979-4685-a2ee-61a1b0347bbf 2011-09-20 17:05:00.655 EDT 6787f3b0-acd4-489e-a49c-666cc3480c46 2011-09-19 20:26:33.88 EDT 01b8cddd-c09e-4a82-b47c-25d3e350f925 2011-09-19 13:16:43.692 EDT 40b3dc05-0fbc-4b64-b88e-5d554e567c12 2011-09-19 13:14:00.330 EDT d342d10e-a913-4ec4-850a-2f0400ebc420 2011-09-19 13:15:06.702 EDT e9a70481-e50c-4d61-b2b8-2f6274f22e81 2011-09-19 20:39:52.447 EDT bdd784aa-c834-4e4f-9d08-e23607f762b0 2011-09-20 17:00:03.944 EDT 52ec7720-7cbb-4677-b1c5-6d685639eef4 2011-09-19 13:22:47.263 EDT 16f8f612-b7dd-4430-b40d-700cc86e94a8 2011-09-19 13:26:23.546 EDT 08895feb-25be-4ebd-8dea-4376884d3841 2011-09-19 20:21:57.396 EDT 4cef025c-8615-4bfd-b21a-acec9c080cd6 2011-09-19 13:12:51.696 EDT 572d7678-6d1e-4262-8827-0dcc6b2251b4 2011-09-19 20:50:07.548 EDT 61986a9d-0299-4a53-9baa-9e336df70810 2011-09-19 21:17:01.423 EDT 52cc9e3a-d7a1-42ea-a23f-ae9c71c0fe52 2011-09-19 13:24:25.726 EDT 2fb4b48a-8be9-476f-8895-ad5bcb8515b3 2011-09-20 16:59:33.476 EDT