TransformXMLelementtolistofdataXMLelementselementXml00text/xml2011-07-19 08:52:24.512 CESTTimepoints or results XML elements.
Example value:
<results>
<result>
<constant name="c1">1</constant>
<constant name="c2">2</constant>
<property name="p1">1</property>
<property name="p2>2</property>
</result>
</results>2011-07-19 08:52:24.512 CESTtext/plain2011-07-19 08:52:24.512 CESTargNameList11text/plain2011-07-19 08:52:24.512 CESTList of arguments names to leave in the resulting data series.
Example value:
c1
c22011-07-19 08:52:24.512 CESTvalNameListList22List of lists of values names to split with and leave in the resulting data series.
Example value:
p22011-07-19 08:52:24.512 CESTtext/plain2011-07-19 08:52:24.512 CESTdataXmlListtext/xml2011-07-19 08:52:24.512 CESTprojectCoordinatescoordinateNameList1inXml0outXml00net.sf.taverna.t2.activitiesbeanshell-activity1.3net.sf.taverna.t2.activities.beanshell.BeanshellActivityinXml0'text/xml'java.lang.StringtruecoordinateNameList1l('text/plain')java.lang.StringtrueoutXml0'text/xml'0workflownet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize1net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry1.0000net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokemergeListsApplyinBaseList1inExtListOfLists2outList22net.sf.taverna.t2.activitiesbeanshell-activity1.3net.sf.taverna.t2.activities.beanshell.BeanshellActivityinBaseList1l('text/plain')java.lang.StringtrueinExtListOfLists2l(l('text/plain'))java.lang.StringtrueoutList2l(l('text/plain'))2workflownet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize1net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry1.0000net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeelementXml2dataXml_xslFileURLvalue00net.sf.taverna.t2.activitiesstringconstant-activity1.3net.sf.taverna.t2.activities.stringconstant.StringConstantActivityhttp://bioputer.mimuw.edu.pl/tav4sb/workflows/elementXml2dataXml.xslnet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize1net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry1.0000net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeelementXml2dataXmlxsltString0sourceString0outputString00net.sf.taverna.t2.activitieslocalworker-activity1.3net.sf.taverna.t2.activities.localworker.LocalworkerActivitysourceString0text/plainjava.lang.StringtruexsltString0text/plainjava.lang.StringtrueparamList1text/plainjava.lang.StringtrueoutputString00workflownet.sourceforge.taverna.scuflworkers.xml.XSLTWorkerWithParametersnet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize1net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry1.0100050000net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokegetXsltfileurl0encoding0filecontents00net.sf.taverna.t2.activitieslocalworker-activity1.3net.sf.taverna.t2.activities.localworker.LocalworkerActivityfileurl0'text/plain'java.lang.Stringtrueencoding0'text/plain'java.lang.Stringtruefilecontents0'text/plain'0workflownet.sourceforge.taverna.scuflworkers.io.TextFileReadernet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize1net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry1.0100050000net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokexsltEncodingvalue00net.sf.taverna.t2.activitiesstringconstant-activity1.3net.sf.taverna.t2.activities.stringconstant.StringConstantActivityUTF-8net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize1net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry1.0100050000net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeprojectCoordinatescoordinateNameListprojectCoordinatesinXmlmergeListsApplyinBaseListmergeListsApplyinExtListOfListselementXml2dataXmlxsltStringelementXml2dataXmlsourceStringgetXsltfileurlgetXsltencodingdataXmlList16f4d496-8d3d-4c37-a345-67060cd239bc2011-07-19 08:56:19.21 CESTCurrently supported input XML elements are: results (with result/property and result/constant sub-elements) and timepoints (with timepoint/time and timepoint/variable sub-element).2011-07-19 08:52:24.538 CESTMikołaj Rybiński2011-07-19 08:52:24.538 CESTTransform XML element to list of data XML elements2011-07-19 08:52:24.538 CESTmathPlotWebserviceaxisList11text/plain2011-07-19 08:51:38.250 CESTList of two or three axes names to be drawn. Axes names are used to select cooridnates, by name, from the data series points. Order on the list determines which axis will be abscissa and which ordinate.
Example value (3D plot with abscissas 't' and 'u' and ordinate 'f'):
t
u
f2011-07-19 08:51:38.250 CESToptionList11List of plot options in the pseudo-Mathematica rules format, i.e.
OptionName -> OptionValue
List will be converted to appropriate XML format. Allowed option value types are number, string, Mathematica symbol or heterogeneous list of any of those types . These are represented as:
n.
"text"
Symbol
{ el1, el2, ... }
repectively, i.e. text containing '.' character is treated as a number (e.g. '1.', '2.5', etc.), quoted text is interpreted as a string, plain text w/o '.' character is interpreted as a Mathematica symbol and curly brackets delimit list, which elements are comma-separated. ATTENTION: comas and quotes inside of the string must be escaped with backslash (i.e. "\," or "\""); you can also escape curly brackets for consistency but it's not mandatory.
Among available options are any of Mathematica options aceptable by the:
* ListPlot (http://reference.wolfram.com/mathematica/ref/ListPlot.html),
* ListPlot3D (http://reference.wolfram.com/mathematica/ref/ListPlot3D.html), and
* Legend (http://reference.wolfram.com/mathematica/PlotLegends/ref/Legend.html)
functions options, except of the PlotStyle option.
PlotStyle option is constructed from the following convenience options (default values in brackets):
* MarkerColor (-> Automatic): color for points markers and, if no ColorFunction given, also color for lines (2D) or surfaces (3D); this can be either pre-defined Mathematica color symbol or RGB values list,
* OpacityLevel (-> 1.): opacity level if lines and surfaces (parameter for Mathematica Opacity function),
* ThicknessLevel (-> 5.): thickness of 2D plot lines (1000 times parameter value for Mathematica Thickness function),
* DashingType (-> Infinity): type of 2D plot lines (either pre-defined: Dashed, Dotted, DotDashed or parameter for Mathematica Dashing function).
Other, notable options are:
* PlotLabel (-> None): title of the plot,
* AxesLabel (by default axes names): axes labels,
* LabelStyle (-> Bold): axes labels boldness,
* PlotLegend (by default list with data series name attributes if given): data series names in legend,
* LegendSize (-> Automatic), LegendPosition (-> {1.1, -0.25}), LegendTextSpace (-> Automatic [2D], -> 5 [3D]): legend size, position, and text space respectively,
* Joined (-> True [2D]): flag indicating wether to join markers (plot lines) in the 2D plot,
* PlotMarkers (-> {Automatic, Small} [2D]): what markers to draw at the points plotted, e.g. None,
* ColorFunction (-> None [2D], -> "TemperatureMap" [3D]): coloring scheme (name from the Mathematica ColorData) of lines (2D) or surfaces (3D); if not None, overrides MarkerColor option,
* Mesh (-> None [3D]): additional mesh specification on the surface; mesh is drawn on each of the surfaces and is always depicted as black lines,
* ViewPoint (-> {1., -2., 1.3} [3D]): specification of the 3D plot orientation,
* PlotRange (-> Full): specification of the visible plot range.
Example value (3D plot with three data series):
AxesLabel -> { "t [s]", "u(0)", "f(t\, u(0))" }
PlotLabel -> "Function f of time t and initial condition u(0) for multiplier 1/2, 1, and 2."
PlotLegend -> None
MarkerColor -> { Gray, Red, {0.5,0.5,0.5} }
Mesh -> All
OpacityLevel -> { 0.2, 1., 0.2 }2011-07-19 08:51:38.250 CESTtext/plain2011-07-19 08:51:38.250 CESTdataXmlList11text/xml2011-07-19 08:51:38.250 CESTList of data series repesented as <data> XML tags, containing <point> tags, i.e. list of
<data [name="data_series_name"]>
<point>
<coordinate name="coordinate_1_name">value_1</coordinate>
...
<coordinate name="coordinate_N_name">-value_N</coordinate>
</point>
...
</data>
Points from data series will be projected according to selected axes names. Data name attribute is optional, and, if given, will be used to create plot legend (explicit 'PlotLegend' option have precedence).
Example value (one data series XML):
<data name="id">
<point>
<coordinate name="t">1</coordinate>
<coordinate name="u">1</coordinate>
<coordinate name="f">1</coordinate>
</point>
<point>
<coordinate name="t">2</coordinate>
<coordinate name="u">2</coordinate>
<coordinate name="f">2</coordinate>
</point>
<point>
<coordinate name="t">3</coordinate>
<coordinate name="u">3</coordinate>
<coordinate name="f">3</coordinate>
</point>
<point>
<coordinate name="t">1</coordinate>
<coordinate name="u">3</coordinate>
<coordinate name="f">1</coordinate>
</point>
</data>2011-07-19 08:51:38.250 CESTplotstext/plain2011-07-19 08:51:38.250 CESTimage/png2011-07-19 08:51:38.250 CESTapplication/octet-stream2011-07-19 08:51:38.250 CESTmathPlotmathPlotParams0mathPlotResult00attachmentList11net.sf.taverna.t2.activitieswsdl-activity1.3net.sf.taverna.t2.activities.wsdl.WSDLActivityhttp://bioputer.mimuw.edu.pl/tav4sb/services/wsdlmathPlotnet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize1net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry1.0000net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokesetOptionXmlListinput1output11net.sf.taverna.t2.activitiesbeanshell-activity1.3net.sf.taverna.t2.activities.beanshell.BeanshellActivityinput1l('text/plain')java.lang.Stringtrueoutput1l('text/xml')1workflownet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize1net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry1.0000net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeDecode_base64_to_bytebase640bytes00net.sf.taverna.t2.activitieslocalworker-activity1.3net.sf.taverna.t2.activities.localworker.LocalworkerActivitybase640'text/plain'java.lang.Stringtruebytes0'application/octet-stream'0workflowcommons-codeccommons-codec1.31635363350commons-codec:commons-codec:1.3org.embl.ebi.escience.scuflworkers.java.DecodeBase64net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize1net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry1.0000net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokemathPlotParamsXMLoption1data1axis1output00net.sf.taverna.t2.activitieswsdl-activity1.3net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLInputSplitterActivityaxis1l('text/plain')java.lang.Stringtruedata1l('text/xml')java.lang.Stringtrueoption1l('text/xml')java.lang.Stringtrueoutput0'text/xml'0<s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="mathPlotParams" name="mathPlotParams" qname="{http://bioputer.mimuw.edu.pl/tav4sb/services/xsd/mathematica}mathPlotParams"><s:elements><s:arraytype optional="false" unbounded="false" wrapped="false" typename="PlotAxis" name="axis" qname=">mathPlotParams>axis"><s:elementtype><s:basetype optional="false" unbounded="false" typename="string" name="PlotAxis" qname="{http://bioputer.mimuw.edu.pl/tav4sb/services/xsd/mathematica}PlotAxis" /></s:elementtype></s:arraytype><s:arraytype optional="false" unbounded="true" wrapped="false" typename="ArrayOfPoint" name="data" qname=">mathPlotParams>data"><s:elementtype><s:arraytype optional="false" unbounded="false" wrapped="true" typename="ArrayOfPoint" name="ArrayOfPoint" qname="{http://bioputer.mimuw.edu.pl/tav4sb/services/xsd/mathematica}ArrayOfPoint"><s:elementtype><s:arraytype optional="false" unbounded="false" wrapped="true" typename="Point" name="ArrayOfstring" qname="{http://bioputer.mimuw.edu.pl/tav4sb/services/xsd/mathematica}Point"><s:elementtype><s:basetype optional="false" unbounded="false" typename="string" name="NumericValue" qname="{http://bioputer.mimuw.edu.pl/tav4sb/services/xsd/mathematica}NumericValue" /></s:elementtype></s:arraytype></s:elementtype></s:arraytype></s:elementtype></s:arraytype><s:arraytype optional="true" unbounded="true" wrapped="false" typename="Option" name="option" qname=">mathPlotParams>option"><s:elementtype><s:complextype optional="false" unbounded="false" typename="Option" name="" qname="{http://bioputer.mimuw.edu.pl/tav4sb/services/xsd/mathematica}Option"><s:elements><s:basetype optional="false" unbounded="false" typename="string" name="name" qname="Option>name" /><s:complextype optional="false" unbounded="false" typename="MathType" name="value" qname="Option>value"><s:elements /></s:complextype></s:elements></s:complextype></s:elementtype></s:arraytype></s:elements></s:complextype></s:extensions>net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize1net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry1.0000net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokemathPlotResultXMLinput0plot11net.sf.taverna.t2.activitieswsdl-activity1.3net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLOutputSplitterActivityinput0'text/xml'java.lang.Stringtrueplot1l('text/plain')1<s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="mathPlotResult" name="mathPlotResult" qname="{http://bioputer.mimuw.edu.pl/tav4sb/services/xsd/mathematica}mathPlotResult"><s:elements><s:arraytype optional="true" unbounded="true" wrapped="false" typename="Plot" name="plot" qname=">mathPlotResult>plot"><s:elementtype><s:basetype optional="false" unbounded="false" typename="base64Binary" name="Plot" qname="{http://bioputer.mimuw.edu.pl/tav4sb/services/xsd/mathematica}Plot" /></s:elementtype></s:arraytype></s:elements></s:complextype></s:extensions>net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize1net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry1.0000net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokesetOptionXmlListinputmathPlotmathPlotParamsDecode_base64_to_bytebase64mathPlotParamsXMLoptionmathPlotParamsXMLdatamathPlotParamsXMLaxismathPlotResultXMLinputplotsmathPlot Web service2011-07-19 08:51:39.162 CESTMikołaj Rybiński2011-07-19 08:51:39.162 CESTa3c9bd69-0fa4-439c-8f3b-75f6dee8dcfa2011-07-19 09:14:41.233 CEST2011-07-19 08:51:39.162 CESTSimulateSBMLderivedODEstimepointsXmltext/xml2011-07-19 08:51:37.783 CESTerrortext/plain2011-07-19 08:51:37.783 CESTplotapplication/octet-stream2011-07-19 08:51:37.783 CESTsimTimevalue00net.sf.taverna.t2.activitiesstringconstant-activity1.3net.sf.taverna.t2.activities.stringconstant.StringConstantActivity30net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize1net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry1.0000net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokesimTimepointsNrvalue00net.sf.taverna.t2.activitiesstringconstant-activity1.3net.sf.taverna.t2.activities.stringconstant.StringConstantActivity100net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize1net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry1.0000net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeconcentrationStrvalue00net.sf.taverna.t2.activitiesstringconstant-activity1.3net.sf.taverna.t2.activities.stringconstant.StringConstantActivityconcentrationnet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize1net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry1.0000net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokemodelUrlvalue00net.sf.taverna.t2.activitiesstringconstant-activity1.3net.sf.taverna.t2.activities.stringconstant.StringConstantActivityhttp://bioputer.mimuw.edu.pl/tav4sb/models/enzyme.xmlnet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize1net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry1.0000net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeplotOptCsvvalue00net.sf.taverna.t2.activitiesstringconstant-activity1.3net.sf.taverna.t2.activities.stringconstant.StringConstantActivityPlotMarkers -> None; PlotLegend -> {"S", "E", "ES", "P"}net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize1net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry1.0000net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvoketimeStrListApendstr0list11net.sf.taverna.t2.activitiesbeanshell-activity1.3net.sf.taverna.t2.activities.beanshell.BeanshellActivitystr0'text/plain'java.lang.Stringtruelist1l('text/plain')1workflownet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize1net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry1.0000net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokestring2Liststr0list11net.sf.taverna.t2.activitiesbeanshell-activity1.3net.sf.taverna.t2.activities.beanshell.BeanshellActivitystr0'text/plain'java.lang.Stringtruelist1l('text/plain')1workflownet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize1net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry1.0000net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokerenameCoordinatedataXml0newName0oldName0renamed00net.sf.taverna.t2.activitiesbeanshell-activity1.3net.sf.taverna.t2.activities.beanshell.BeanshellActivitydataXml0'text/xml'java.lang.StringtrueoldName0'text/plain'java.lang.StringtruenewName0'text/plain'java.lang.Stringtruerenamed0'text/xml'0workflownet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize1net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry1.0000net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvoketimepointsXml2dataXmlListargNameList1valNameListList2elementXml0dataXmlList11net.sf.taverna.t2.activitiesdataflow-activity1.3net.sf.taverna.t2.activities.dataflow.DataflowActivitynet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize1net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry1.0000net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeMathPlotaxisList1dataXmlList1optionList1plots11net.sf.taverna.t2.activitiesdataflow-activity1.3net.sf.taverna.t2.activities.dataflow.DataflowActivitynet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize1net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry1.0000net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokefilterVariablesstringlist1regex0filteredlist11net.sf.taverna.t2.activitieslocalworker-activity1.3net.sf.taverna.t2.activities.localworker.LocalworkerActivitystringlist1l('text/plain')java.lang.Stringtrueregex0'text/plain'java.lang.Stringtruefilteredlist1l('text/plain')1workfloworg.embl.ebi.escience.scuflworkers.java.FilterStringListnet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize1net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry1.0000net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeOdeSolversimtp0sensitivityAnalysis0simt0rtol0atol0model0timepointsXml00error00variablesList11net.sf.taverna.t2.activitiesdataflow-activity1.3net.sf.taverna.t2.activities.dataflow.DataflowActivitynet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize1net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry1.0000net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvoketimepointsXml2dataXmlList_argNameList_defaultValuevalue00net.sf.taverna.t2.activitiesstringconstant-activity1.3net.sf.taverna.t2.activities.stringconstant.StringConstantActivitytimenet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize1net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry1.0000net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokevarNameRegexvalue00net.sf.taverna.t2.activitiesstringconstant-activity1.3net.sf.taverna.t2.activities.stringconstant.StringConstantActivitym\d+net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize1net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry1.0000net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokeatolvalue00net.sf.taverna.t2.activitiesstringconstant-activity1.3net.sf.taverna.t2.activities.stringconstant.StringConstantActivity1e-12net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize1net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry1.0000net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokertolvalue00net.sf.taverna.t2.activitiesstringconstant-activity1.3net.sf.taverna.t2.activities.stringconstant.StringConstantActivity1e-6net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize1net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry1.0000net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeifSensitivityAnalysisvalue00net.sf.taverna.t2.activitiesstringconstant-activity1.3net.sf.taverna.t2.activities.stringconstant.StringConstantActivityfalsenet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize1net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry1.0000net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokegetModelfileurl0encoding0filecontents00net.sf.taverna.t2.activitieslocalworker-activity1.3net.sf.taverna.t2.activities.localworker.LocalworkerActivityfileurl0'text/plain'java.lang.Stringtrueencoding0'text/plain'java.lang.Stringtruefilecontents0'text/plain'0workflownet.sourceforge.taverna.scuflworkers.io.TextFileReadernet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize1net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry1.0100050000net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokemodelEncodingvalue00net.sf.taverna.t2.activitiesstringconstant-activity1.3net.sf.taverna.t2.activities.stringconstant.StringConstantActivityUTF-8net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize1net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry1.0100050000net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokesplitCsvstring0regex0split11net.sf.taverna.t2.activitieslocalworker-activity1.3net.sf.taverna.t2.activities.localworker.LocalworkerActivitystring0'text/plain'java.lang.Stringtrueregex0'text/plain'java.lang.Stringtruesplit1l('text/plain')1workfloworg.embl.ebi.escience.scuflworkers.java.SplitByRegexnet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize1net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry1.0100050000net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokesepRegexvalue00net.sf.taverna.t2.activitiesstringconstant-activity1.3net.sf.taverna.t2.activities.stringconstant.StringConstantActivity\s*;\s*net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize1net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry1.0100050000net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvoketimeStrListApendstrstring2ListstrrenameCoordinatedataXmlrenameCoordinatenewNamerenameCoordinateoldNametimepointsXml2dataXmlListargNameListtimepointsXml2dataXmlListvalNameListListtimepointsXml2dataXmlListelementXmlMathPlotaxisListMathPlotdataXmlListMathPlotoptionListfilterVariablesstringlistfilterVariablesregexOdeSolversimtpOdeSolversensitivityAnalysisOdeSolversimtOdeSolverrtolOdeSolveratolOdeSolvermodelgetModelfileurlgetModelencodingsplitCsvstringsplitCsvregextimepointsXmlerrorplotSimulate SBML-derived ODEs2011-07-19 08:51:39.247 CEST723025d4-27aa-4b70-bc57-5988a5a2bf102011-07-19 09:14:40.652 CEST2011-07-19 08:51:39.247 CESTMikołaj Rybiński2011-07-19 08:51:39.247 CESTodeSolverWebservicemodel00SBML model file content.
Example value:
<sbml xmlns="http://www.sbml.org/sbml/level2" level="2" version="1">
<model id="Reaction" name="Single reaction">
<listOfUnitDefinitions>
<unitDefinition id="substance" name="moles">
<listOfUnits>
<unit kind="mole" scale="1" multiplier="1" offset="0"/>
</listOfUnits>
</unitDefinition>
<unitDefinition id="M" name="M">
<listOfUnits>
<unit kind="mole" scale="1" multiplier="1" offset="0"/>
<unit kind="litre" exponent="-1" multiplier="1" offset="0"/>
</listOfUnits>
</unitDefinition>
<unitDefinition id="M_per_second" name="M/s">
<listOfUnits>
<unit kind="mole" scale="1" multiplier="1" offset="0"/>
<unit kind="litre" exponent="-1" multiplier="1" offset="0"/>
<unit kind="second" exponent="-1" multiplier="1" offset="0"/>
</listOfUnits>
</unitDefinition>
<unitDefinition id="sec_inv" name="1/s">
<listOfUnits>
<unit kind="second" exponent="-1" multiplier="1" offset="0"/>
</listOfUnits>
</unitDefinition>
</listOfUnitDefinitions>
<listOfCompartments>
<compartment id="s" name="solution" size="1"/>
</listOfCompartments>
<listOfSpecies>
<species id="S" name="Substrate" compartment="s" initialConcentration="10"/>
<species id="P" name="Product" compartment="s" initialConcentration="0"/>
</listOfSpecies>
<listOfReactions>
<reaction id="r1" name="Substrate conversion" reversible="false">
<listOfReactants>
<speciesReference species="S"/>
</listOfReactants>
<listOfProducts>
<speciesReference species="P"/>
</listOfProducts>
<kineticLaw>
<math xmlns="http://www.w3.org/1998/Math/MathML">
<apply>
<times/>
<ci> k </ci>
<ci> S </ci>
</apply>
</math>
<listOfParameters>
<parameter id="k" value="0.1"/>
</listOfParameters>
</kineticLaw>
</reaction>
</listOfReactions>
</model>
</sbml>2011-07-19 08:51:39.178 CESTtext/plain2011-07-19 08:51:39.178 CESTsimt00Simulation end time in abstract time units (whatever time scale model is using).
Example value:
302011-07-19 08:51:39.178 CESTtext/plain2011-07-19 08:51:39.178 CESTsimtp00Time points to print in simulation. By default each integer time point (value of the 'simt' parameter).
Example value:
102011-07-19 08:51:39.178 CESTtext/plain2011-07-19 08:51:39.178 CESTatol00Absolute error tolerance used during ODEs integration. By default 1e-12.
Example value:
1e-122011-07-19 08:51:39.178 CESTtext/plain2011-07-19 08:51:39.178 CESTrtol00text/plain2011-07-19 08:51:39.178 CESTRelative error tolerance used during ODEs integration. By default 1e-6.
Example value:
1e-62011-07-19 08:51:39.178 CESTsensitivityAnalysis00text/plain2011-07-19 08:51:39.179 CESTCurrently not used. Flag indicating whether to activate sensitivity analysis. By default false.
Example value:
false2011-07-19 08:51:39.179 CESTerrortext/plain2011-07-19 08:51:39.179 CESTtimepointsXmltext/xml2011-07-19 08:51:39.179 CESTvariablesListtext/plain2011-07-19 08:51:39.179 CESTodeSolverodeSolverParams0attachmentList11odeSolverResult00net.sf.taverna.t2.activitieswsdl-activity1.3net.sf.taverna.t2.activities.wsdl.WSDLActivityhttp://bioputer.mimuw.edu.pl/tav4sb/services/wsdlodeSolvernet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize1net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry1.0000net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokevariablesNamesXPathvalue00net.sf.taverna.t2.activitiesstringconstant-activity1.3net.sf.taverna.t2.activities.stringconstant.StringConstantActivity//variable/@namenet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize1net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry1.0000net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokegetVariablesNamesxpath0xml-text0nodelist11nodelistAsXML11net.sf.taverna.t2.activitieslocalworker-activity1.3net.sf.taverna.t2.activities.localworker.LocalworkerActivityxpath0'text/plain'java.lang.Stringtruexml-text0'text/xml'java.lang.Stringtruenodelist1l('text/plain')1nodelistAsXML1l('text/plain')1workflowdom4jdom4j1.6716010169dom4j:dom4j:1.6net.sourceforge.taverna.scuflworkers.xml.XPathTextWorkernet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize1net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry1.0000net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvoketrajectoriesXMLinput0timepoints00variables00net.sf.taverna.t2.activitieswsdl-activity1.3net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLOutputSplitterActivityinput0'text/xml'java.lang.Stringtruevariables0'text/xml'0timepoints0'text/xml'0<s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="true" unbounded="false" typename="Trajectories" name="trajectories" qname=">odeSolverResult>trajectories"><s:elements><s:arraytype optional="false" unbounded="false" wrapped="true" typename="ArrayOfVariable" name="variables" qname="Trajectories>variables"><s:elementtype><s:complextype optional="false" unbounded="false" typename="Variable" name="" qname="{http://bioputer.mimuw.edu.pl/tav4sb/services/xsd/odesolver}Variable"><s:elements /></s:complextype></s:elementtype></s:arraytype><s:arraytype optional="false" unbounded="false" wrapped="true" typename="ArrayOfTimepointValues" name="timepoints" qname="Trajectories>timepoints"><s:elementtype><s:complextype optional="false" unbounded="false" typename="TimepointValues" name="" qname="{http://bioputer.mimuw.edu.pl/tav4sb/services/xsd/odesolver}TimepointValues"><s:elements><s:basetype optional="false" unbounded="false" typename="string" name="time" qname="TimepointValues>time" /><s:arraytype optional="false" unbounded="true" wrapped="false" typename="FiniteValue" name="variable" qname="TimepointValues>variable"><s:elementtype><s:basetype optional="false" unbounded="false" typename="string" name="FiniteValue" qname="{http://bioputer.mimuw.edu.pl/tav4sb/services/xsd/odesolver}FiniteValue" /></s:elementtype></s:arraytype></s:elements></s:complextype></s:elementtype></s:arraytype></s:elements></s:complextype></s:extensions>net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize1net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry1.0000net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeodeSolverResultXMLinput0error00trajectories00net.sf.taverna.t2.activitieswsdl-activity1.3net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLOutputSplitterActivityinput0'text/xml'java.lang.Stringtruetrajectories0'text/xml'0error0'text/plain'0<s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="odeSolverResult" name="odeSolverResult" qname="{http://bioputer.mimuw.edu.pl/tav4sb/services/xsd/odesolver}odeSolverResult"><s:elements><s:complextype optional="true" unbounded="false" typename="Trajectories" name="trajectories" qname=">odeSolverResult>trajectories"><s:elements><s:arraytype optional="false" unbounded="false" wrapped="true" typename="ArrayOfVariable" name="variables" qname="Trajectories>variables"><s:elementtype><s:complextype optional="false" unbounded="false" typename="Variable" name="" qname="{http://bioputer.mimuw.edu.pl/tav4sb/services/xsd/odesolver}Variable"><s:elements /></s:complextype></s:elementtype></s:arraytype><s:arraytype optional="false" unbounded="false" wrapped="true" typename="ArrayOfTimepointValues" name="timepoints" qname="Trajectories>timepoints"><s:elementtype><s:complextype optional="false" unbounded="false" typename="TimepointValues" name="" qname="{http://bioputer.mimuw.edu.pl/tav4sb/services/xsd/odesolver}TimepointValues"><s:elements><s:basetype optional="false" unbounded="false" typename="string" name="time" qname="TimepointValues>time" /><s:arraytype optional="false" unbounded="true" wrapped="false" typename="FiniteValue" name="variable" qname="TimepointValues>variable"><s:elementtype><s:basetype optional="false" unbounded="false" typename="string" name="FiniteValue" qname="{http://bioputer.mimuw.edu.pl/tav4sb/services/xsd/odesolver}FiniteValue" /></s:elementtype></s:arraytype></s:elements></s:complextype></s:elementtype></s:arraytype></s:elements></s:complextype><s:basetype optional="true" unbounded="false" typename="string" name="error" qname=">odeSolverResult>error" /></s:elements></s:complextype></s:extensions>net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize1net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry1.0000net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeodeSolverParamsXMLrtol0atol0model0simtp0sensitivityAnalysis0simt0output00net.sf.taverna.t2.activitieswsdl-activity1.3net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLInputSplitterActivitymodel0'text/plain'java.lang.Stringtruesimt0'text/plain'java.lang.Stringtruesimtp0'text/plain'java.lang.Stringtrueatol0'text/plain'java.lang.Stringtruertol0'text/plain'java.lang.StringtruesensitivityAnalysis0'text/plain'java.lang.Stringtrueoutput0'text/xml'0<s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="odeSolverParams" name="odeSolverParams" qname="{http://bioputer.mimuw.edu.pl/tav4sb/services/xsd/odesolver}odeSolverParams"><s:elements><s:basetype optional="false" unbounded="false" typename="string" name="model" qname=">odeSolverParams>model" /><s:basetype optional="false" unbounded="false" typename="decimal" name="simt" qname=">odeSolverParams>simt" /><s:basetype optional="true" unbounded="false" typename="decimal" name="simtp" qname=">odeSolverParams>simtp" /><s:basetype optional="true" unbounded="false" typename="decimal" name="atol" qname=">odeSolverParams>atol" /><s:basetype optional="true" unbounded="false" typename="decimal" name="rtol" qname=">odeSolverParams>rtol" /><s:basetype optional="true" unbounded="false" typename="boolean" name="sensitivityAnalysis" qname=">odeSolverParams>sensitivityAnalysis" /></s:elements></s:complextype></s:extensions>net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize1net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry1.0000net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeodeSolverodeSolverParamsgetVariablesNamesxpathgetVariablesNamesxml-texttrajectoriesXMLinputodeSolverResultXMLinputodeSolverParamsXMLrtolodeSolverParamsXMLatolodeSolverParamsXMLmodelodeSolverParamsXMLsimtpodeSolverParamsXMLsensitivityAnalysisodeSolverParamsXMLsimterrortimepointsXmlvariablesListSBML ODE Solver Library (http://www.tbi.univie.ac.at/~raim/odeSolver/) Web service.2011-07-19 08:51:39.240 CESTMikołaj Rybiński2011-07-19 08:51:39.240 CESTodeSolver Web service2011-07-19 08:51:39.240 CEST1f6c7782-280f-465f-a071-d9626c06d09a2011-07-19 09:14:41.47 CEST