Generation of protein backbone and side chain co-ordinates from a C(alpha) trace using the MaxSprout tool. The EBI's WSMaxsprout service (see http://www.ebi.ac.uk/Tools/webservices/services/maxsprout) is used to access the tool.
Submit a MaxSprout job (see http://www.ebi.ac.uk/Tools/webservices/services/maxsprout#runmaxsprout_params_content)
http://www.ebi.ac.uk/Tools/webservices/wsdl/WSMaxsprout.wsdl
runMaxsprout
Get the results of a job (see http://www.ebi.ac.uk/Tools/webservices/services/maxsprout#poll_jobid_type)
tooloutput
http://www.ebi.ac.uk/Tools/webservices/wsdl/WSMaxsprout.wsdl
poll
Parameters for job.
1
org.embl.ebi.escience.scuflworkers.java.XMLInputSplitter
Wrap input data in list.
org.embl.ebi.escience.scuflworkers.java.XMLInputSplitter
Add type to input data.
sequence
org.embl.ebi.escience.scuflworkers.java.XMLInputSplitter
Unpack byte[] into string.
org.embl.ebi.escience.scuflworkers.java.ByteArrayToString
Check job status. Fails if not done.
Get the status of a submited job (see http://www.ebi.ac.uk/Tools/webservices/services/maxsprout#checkstatus_jobid)
http://www.ebi.ac.uk/Tools/webservices/wsdl/WSMaxsprout.wsdl
checkStatus
if(job_status.equals("DONE")) {
is_done = "true";
} else {
is_done = "false";
}
job_status
is_done
org.embl.ebi.escience.scuflworkers.java.FailIfFalse
Input C(alpha) trace in PDB format. Example: PDB:1crn.
User e-mail address.
chemical/x-pdb
MaxSprout backbone and side chain co-ordinates in PDB like format.
Completed
EBI_MaxSprout_poll_job
Get_result
Scheduled
Running