Remove_compression_from_compressed_TIFF_filesurl_to_textfile_with_image_urls00
http://fue.onb.ac.at/tmp/aqua/list.txt
2011-06-13 16:59:21.45 CEST
URL of a textfile that contains a list of urls serving as the input of this workflow. It contains compressed and uncompressed images.
2011-06-14 11:52:14.951 CEST
convert_compression00
0
2011-06-14 11:24:39.522 CEST
Compression that should be applied to the result images list - usually 0 means: remove compression. Value range: integer from 1-6. Meaning of values := None (0), LZW (1), PACKBITS(2), DEFLATE (3), JPEG (4), CCITT G3 Fax (5), CCITT G4 Fax (6))
2011-06-14 11:44:42.770 CEST
convert_numcolors00
Number of colors (2-256)
2011-06-14 11:25:05.725 CEST
2
2011-06-14 14:53:03.585 CEST
csresult_regex00
Regular expression for the compression scheme value
2011-06-14 14:49:18.9 CEST
.*Group 4 Fax.*
2011-06-14 14:48:32.308 CEST
2_group_4_fax_compressed_images1_characterisation_result
Characterisation result
2011-06-14 14:56:40.424 CEST
3_uncompressed_result_image4_gimp_processing_log5_uncompressed_characterisationGet_list_of_imagesinputUrl0list11net.sf.taverna.t2.activitiesdataflow-activity1.3-SNAPSHOTnet.sf.taverna.t2.activities.dataflow.DataflowActivitynet.sf.taverna.t2.coreworkflowmodel-impl1.3-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.3-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.3-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokecharacteriseFilepart10part100net.sf.taverna.t2.activitieswsdl-activity1.3-SNAPSHOTnet.sf.taverna.t2.activities.wsdl.WSDLActivity
http://fue.onb.ac.at/scape-services/services/SCAPEFits050Service?wsdl
characteriseFile
HTTPBasicAuthNPlainTextPassword
net.sf.taverna.t2.coreworkflowmodel-impl1.3-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.3-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.3-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokecharacteriseFile_part1inputFile0output00net.sf.taverna.t2.activitieswsdl-activity1.3-SNAPSHOTnet.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLInputSplitterActivity
inputFile
0
'text/plain'
false
output
0
'text/xml'
0
<s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="Request" name="part1" qname="{http://org/opflabs/scape/tb}Request"><s:elements><s:basetype optional="false" unbounded="false" typename="anyURI" name="inputFile" qname="{http://org/opflabs/scape/tb}RequestType>inputFile" /></s:elements></s:complextype></s:extensions>
net.sf.taverna.t2.coreworkflowmodel-impl1.3-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.3-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.3-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokecharacteriseFile_part1_2input0outputFile00net.sf.taverna.t2.activitieswsdl-activity1.3-SNAPSHOTnet.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLOutputSplitterActivity
input
0
'text/xml'
java.lang.String
false
outputFile
0
'text/plain'
0
success
0
'text/plain'
0
processingUnit
0
'text/plain'
0
processingLog
0
'text/plain'
0
<s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="Response" name="part1" qname="{http://org/opflabs/scape/tb}Response"><s:elements><s:basetype optional="true" unbounded="false" typename="anyURI" name="outputFile" qname="{http://org/opflabs/scape/tb}ResponseType>outputFile" /><s:basetype optional="false" unbounded="false" typename="boolean" name="success" qname="{http://org/opflabs/scape/tb}ResponseType>success" /><s:basetype optional="false" unbounded="false" typename="string" name="processingUnit" qname="{http://org/opflabs/scape/tb}ResponseType>processingUnit" /><s:basetype optional="false" unbounded="false" typename="string" name="processingLog" qname="{http://org/opflabs/scape/tb}ResponseType>processingLog" /></s:elements></s:complextype></s:extensions>
net.sf.taverna.t2.coreworkflowmodel-impl1.3-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.3-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.3-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeXPath_Servicexml_text0nodelist11net.sf.taverna.t2.activitiesxpath-activity1.3-SNAPSHOTnet.sf.taverna.t2.activities.xpath.XPathActivity
<?xml version="1.0" encoding="UTF-8"?>
<fits xmlns="http://hul.harvard.edu/ois/xml/ns/fits/fits_output" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://hul.harvard.edu/ois/xml/ns/fits/fits_output http://hul.harvard.edu/ois/xml/xsd/fits/fits_output.xsd" version="0.5.0" timestamp="13.06.11 16:54">
<identification status="CONFLICT">
<identity format="Tagged Image File Format" mimetype="image/tiff">
<tool toolname="Jhove" toolversion="1.5"/>
<tool toolname="Droid" toolversion="3.0"/>
<tool toolname="file utility" toolversion="4.26"/>
<tool toolname="NLNZ Metadata Extractor" toolversion="3.4GA"/>
<tool toolname="ffident" toolversion="0.2"/>
<version toolname="Jhove" toolversion="1.5" status="CONFLICT">5.0</version>
<version toolname="Droid" toolversion="3.0" status="CONFLICT">3</version>
<version toolname="Droid" toolversion="3.0" status="CONFLICT">4</version>
<version toolname="Droid" toolversion="3.0" status="CONFLICT">6</version>
<externalIdentifier toolname="Droid" toolversion="3.0" type="puid">fmt/7</externalIdentifier>
<externalIdentifier toolname="Droid" toolversion="3.0" type="puid">fmt/8</externalIdentifier>
<externalIdentifier toolname="Droid" toolversion="3.0" type="puid">fmt/9</externalIdentifier>
<externalIdentifier toolname="Droid" toolversion="3.0" type="puid">fmt/10</externalIdentifier>
</identity>
<identity format="TIFF EXIF" mimetype="image/tiff">
<tool toolname="Exiftool" toolversion="7.74"/>
</identity>
</identification>
<fileinfo>
<size toolname="Jhove" toolversion="1.5">146462</size>
<creatingApplicationName toolname="Jhove" toolversion="1.5">SRZ Proscan Book V2.1.44</creatingApplicationName>
<lastmodified toolname="Exiftool" toolversion="7.74" status="SINGLE_RESULT">2011:06:13 16:54:21+02:00</lastmodified>
<filename toolname="OIS File Information" toolversion="0.1" status="SINGLE_RESULT">/usr/local/java/apache-tomcat-6.0.26/temp/fits050-tmp-store/fromurl5856905574101931580.tif</filename>
<md5checksum toolname="OIS File Information" toolversion="0.1" status="SINGLE_RESULT">3f2f48316ed25282f605ca2bcc00a003</md5checksum>
<fslastmodified toolname="OIS File Information" toolversion="0.1" status="SINGLE_RESULT">1307976861000</fslastmodified>
</fileinfo>
<filestatus>
<well-formed toolname="Jhove" toolversion="1.5" status="SINGLE_RESULT">true</well-formed>
<valid toolname="Jhove" toolversion="1.5" status="SINGLE_RESULT">true</valid>
</filestatus>
<metadata>
<image>
<byteOrder toolname="Jhove" toolversion="1.5" status="SINGLE_RESULT">little endian</byteOrder>
<compressionScheme toolname="Jhove" toolversion="1.5">T6/Group 4 Fax</compressionScheme>
<imageWidth toolname="Jhove" toolversion="1.5">2960</imageWidth>
<imageHeight toolname="Jhove" toolversion="1.5">4715</imageHeight>
<colorSpace toolname="Jhove" toolversion="1.5">WhiteIsZero</colorSpace>
<orientation toolname="Jhove" toolversion="1.5" status="SINGLE_RESULT">normal*</orientation>
<samplingFrequencyUnit toolname="Jhove" toolversion="1.5">in.</samplingFrequencyUnit>
<xSamplingFrequency toolname="Jhove" toolversion="1.5">400</xSamplingFrequency>
<ySamplingFrequency toolname="Jhove" toolversion="1.5">400</ySamplingFrequency>
<bitsPerSample toolname="Jhove" toolversion="1.5">1</bitsPerSample>
<samplesPerPixel toolname="Jhove" toolversion="1.5" status="SINGLE_RESULT">1</samplesPerPixel>
<imageProducer toolname="Jhove" toolversion="1.5" status="SINGLE_RESULT">Cambridge University Library</imageProducer>
<scanningSoftwareName toolname="Jhove" toolversion="1.5" status="SINGLE_RESULT">SRZ Proscan Book V2.1.44</scanningSoftwareName>
</image>
</metadata>
</fits>
/default:fits/default:metadata/default:image/default:compressionScheme
default
http://hul.harvard.edu/ois/xml/ns/fits/fits_output
xsi
http://www.w3.org/2001/XMLSchema-instance
net.sf.taverna.t2.coreworkflowmodel-impl1.3-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.3-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.3-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeRead_Text_Filefileurl0filecontents00net.sf.taverna.t2.activitieslocalworker-activity1.3-SNAPSHOTnet.sf.taverna.t2.activities.localworker.LocalworkerActivity
fileurl
0
'text/plain'
java.lang.String
true
encoding
0
'text/plain'
java.lang.String
true
filecontents
0
'text/plain'
0
workflow
net.sourceforge.taverna.scuflworkers.io.TextFileReader
net.sf.taverna.t2.coreworkflowmodel-impl1.3-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.3-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.3-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeFlatten_Listinputlist2outputlist11net.sf.taverna.t2.activitieslocalworker-activity1.3-SNAPSHOTnet.sf.taverna.t2.activities.localworker.LocalworkerActivity
inputlist
2
l(l(''))
[B
true
outputlist
1
l('')
1
workflow
org.embl.ebi.escience.scuflworkers.java.FlattenList
net.sf.taverna.t2.coreworkflowmodel-impl1.3-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.3-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.3-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeBeanshelltiff_images_in_list1charactres_in_list1csresult_regex0tiff_images_out_list11net.sf.taverna.t2.activitiesbeanshell-activity1.3-SNAPSHOTnet.sf.taverna.t2.activities.beanshell.BeanshellActivity
tiff_images_in_list
1
text/plain
java.lang.String
true
charactres_in_list
1
text/plain
java.lang.String
true
csresult_regex
0
text/plain
java.lang.String
true
tiff_images_out_list
1
1
workflow
net.sf.taverna.t2.coreworkflowmodel-impl1.3-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.3-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.3-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeconvertTIFFtoTIFFByUrlpart10part100net.sf.taverna.t2.activitieswsdl-activity1.3-SNAPSHOTnet.sf.taverna.t2.activities.wsdl.WSDLActivity
https://fue.onb.ac.at/axis2-l/services/IMPACTGimpImageConversionService?wsdl
convertTIFFtoTIFFByUrl
net.sf.taverna.t2.coreworkflowmodel-impl1.3-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.3-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.3-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeconvertTIFFtoTIFFByUrl_part1compression0numColors0inputUrl0output00net.sf.taverna.t2.activitieswsdl-activity1.3-SNAPSHOTnet.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLInputSplitterActivity
numColors
0
'text/plain'
false
compression
0
'text/plain'
false
inputUrl
0
'text/plain'
false
output
0
'text/xml'
0
<s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="ByUrlTiffRequest" name="part1" qname="{http://iif.impact-project.eu/}ByUrlTiffRequest"><s:elements><s:basetype optional="true" unbounded="false" typename="int" name="numColors" qname="{http://iif.impact-project.eu/}ByUrlTiffRequestType>numColors" /><s:basetype optional="true" unbounded="false" typename="int" name="compression" qname="{http://iif.impact-project.eu/}ByUrlTiffRequestType>compression" /><s:basetype optional="false" unbounded="false" typename="anyURI" name="inputUrl" qname="{http://iif.impact-project.eu/}ByUrlTiffRequestType>inputUrl" /></s:elements></s:complextype></s:extensions>
net.sf.taverna.t2.coreworkflowmodel-impl1.3-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.3-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.3-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeconvertTIFFtoTIFFByUrl_part1_2input0outputUrl00processingLog00net.sf.taverna.t2.activitieswsdl-activity1.3-SNAPSHOTnet.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLOutputSplitterActivity
input
0
'text/xml'
java.lang.String
false
success
0
'text/plain'
0
returncode
0
'text/plain'
0
message
0
'text/plain'
0
toolProcessingTime
0
'text/plain'
0
processingUnit
0
'text/plain'
0
processingLog
0
'text/plain'
0
outputUrl
0
'text/plain'
0
<s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="ByUrlResponse" name="part1" qname="{http://iif.impact-project.eu/}ByUrlResponse"><s:elements><s:basetype optional="false" unbounded="false" typename="boolean" name="success" qname="{http://iif.impact-project.eu/}ByUrlResponseType>success" /><s:basetype optional="false" unbounded="false" typename="int" name="returncode" qname="{http://iif.impact-project.eu/}ByUrlResponseType>returncode" /><s:basetype optional="false" unbounded="false" typename="string" name="message" qname="{http://iif.impact-project.eu/}ByUrlResponseType>message" /><s:basetype optional="false" unbounded="false" typename="int" name="toolProcessingTime" qname="{http://iif.impact-project.eu/}ByUrlResponseType>toolProcessingTime" /><s:basetype optional="false" unbounded="false" typename="string" name="processingUnit" qname="{http://iif.impact-project.eu/}ByUrlResponseType>processingUnit" /><s:basetype optional="false" unbounded="false" typename="string" name="processingLog" qname="{http://iif.impact-project.eu/}ByUrlResponseType>processingLog" /><s:basetype optional="true" unbounded="false" typename="anyURI" name="outputUrl" qname="{http://iif.impact-project.eu/}ByUrlResponseType>outputUrl" /></s:elements></s:complextype></s:extensions>
net.sf.taverna.t2.coreworkflowmodel-impl1.3-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.3-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.3-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeGet_Image_From_URLurl0image00net.sf.taverna.t2.activitieslocalworker-activity1.3-SNAPSHOTnet.sf.taverna.t2.activities.localworker.LocalworkerActivity
url
0
'text/x-taverna-web-url'
java.lang.String
true
base
0
'text/x-taverna-web-url'
java.lang.String
true
image
0
'image/*'
0
workflow
org.embl.ebi.escience.scuflworkers.java.WebImageFetcher
net.sf.taverna.t2.coreworkflowmodel-impl1.3-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.3-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.3-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokecharacteriseFile_2part10part100net.sf.taverna.t2.activitieswsdl-activity1.3-SNAPSHOTnet.sf.taverna.t2.activities.wsdl.WSDLActivity
http://fue.onb.ac.at/scape-services/services/SCAPEFits050Service?wsdl
characteriseFile
HTTPBasicAuthNPlainTextPassword
net.sf.taverna.t2.coreworkflowmodel-impl1.3-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.3-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.3-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokecharacteriseFile_2_part1inputFile0output00net.sf.taverna.t2.activitieswsdl-activity1.3-SNAPSHOTnet.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLInputSplitterActivity
inputFile
0
'text/plain'
false
output
0
'text/xml'
0
<s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="Request" name="part1" qname="{http://org/opflabs/scape/tb}Request"><s:elements><s:basetype optional="false" unbounded="false" typename="anyURI" name="inputFile" qname="{http://org/opflabs/scape/tb}RequestType>inputFile" /></s:elements></s:complextype></s:extensions>
net.sf.taverna.t2.coreworkflowmodel-impl1.3-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.3-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.3-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokecharacteriseFile_2_part1_2input0outputFile00net.sf.taverna.t2.activitieswsdl-activity1.3-SNAPSHOTnet.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLOutputSplitterActivity
input
0
'text/xml'
java.lang.String
false
outputFile
0
'text/plain'
0
success
0
'text/plain'
0
processingUnit
0
'text/plain'
0
processingLog
0
'text/plain'
0
<s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="Response" name="part1" qname="{http://org/opflabs/scape/tb}Response"><s:elements><s:basetype optional="true" unbounded="false" typename="anyURI" name="outputFile" qname="{http://org/opflabs/scape/tb}ResponseType>outputFile" /><s:basetype optional="false" unbounded="false" typename="boolean" name="success" qname="{http://org/opflabs/scape/tb}ResponseType>success" /><s:basetype optional="false" unbounded="false" typename="string" name="processingUnit" qname="{http://org/opflabs/scape/tb}ResponseType>processingUnit" /><s:basetype optional="false" unbounded="false" typename="string" name="processingLog" qname="{http://org/opflabs/scape/tb}ResponseType>processingLog" /></s:elements></s:complextype></s:extensions>
net.sf.taverna.t2.coreworkflowmodel-impl1.3-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.3-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.3-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeRead_Text_File_2fileurl0filecontents00net.sf.taverna.t2.activitieslocalworker-activity1.3-SNAPSHOTnet.sf.taverna.t2.activities.localworker.LocalworkerActivity
fileurl
0
'text/plain'
java.lang.String
true
encoding
0
'text/plain'
java.lang.String
true
filecontents
0
'text/plain'
0
workflow
net.sourceforge.taverna.scuflworkers.io.TextFileReader
net.sf.taverna.t2.coreworkflowmodel-impl1.3-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.3-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.3-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeGet_list_of_imagesinputUrlcharacteriseFilepart1characteriseFile_part1inputFilecharacteriseFile_part1_2inputXPath_Servicexml_textRead_Text_FilefileurlFlatten_ListinputlistBeanshelltiff_images_in_listBeanshellcharactres_in_listBeanshellcsresult_regexconvertTIFFtoTIFFByUrlpart1convertTIFFtoTIFFByUrl_part1compressionconvertTIFFtoTIFFByUrl_part1numColorsconvertTIFFtoTIFFByUrl_part1inputUrlconvertTIFFtoTIFFByUrl_part1_2inputGet_Image_From_URLurlcharacteriseFile_2part1characteriseFile_2_part1inputFilecharacteriseFile_2_part1_2inputRead_Text_File_2fileurl2_group_4_fax_compressed_images1_characterisation_result3_uncompressed_result_image4_gimp_processing_log5_uncompressed_characterisation
6cd82798-ec87-4184-90f0-4976838596db
2011-05-20 19:22:35.730 CEST
b8814a5c-878a-4535-bc28-8fa5ca68e877
2011-05-20 19:21:14.650 CEST
bb2d377d-c2b0-4c56-a24d-07779268711d
2011-05-24 19:57:28.326 CEST
952fb021-f9cb-4c0e-aa6e-d490a0030803
2011-06-14 10:49:10.500 CEST
1408beac-5169-4434-90a3-93c8c0178612
2011-06-14 11:55:00.393 CEST
b1bfdb56-f5c7-4073-b2e1-581e3dbb1e4f
2011-05-24 20:11:51.822 CEST
a43a502c-f6de-4927-8cbd-7b676c5687a5
2011-05-24 19:59:15.479 CEST
67cfd9b3-1c02-4804-851e-7d20ab9e8ecc
2011-05-20 19:01:29.927 CEST
44cb2ccd-a2bb-4af7-9023-be82c454a7af
2011-06-14 14:56:41.626 CEST
670cc62b-be83-4332-bd17-f3121a8946fd
2011-05-20 19:24:20.754 CEST
c530a2b8-a230-4799-97d7-4290eed28b56
2011-06-13 17:07:17.331 CEST
af20eff3-a496-43be-b399-e25761e9bf64
2011-05-24 20:19:08.557 CEST
4b5befbe-7445-4885-afba-99391adebcf8
2011-05-20 19:54:00.855 CEST
ee29adcc-ec1a-40f5-bdf1-f93f8c560753
2011-06-14 14:53:04.976 CEST
5b7477df-53a1-45fa-8b61-e133690b783a
2011-05-20 19:19:17.530 CEST
8ca7fc2f-ad35-4cf1-821a-0819a34eda0d
2011-05-24 20:05:44.382 CEST
9dbfec2f-b0c4-4a13-a74e-38db19981461
2011-05-20 19:44:45.912 CEST
2c05e055-502f-498e-922d-b03c0de6ba6e
2011-05-20 19:29:29.153 CEST
f83d86a2-37a3-4ac8-8050-36a8ba1b008e
2011-05-24 20:03:09.295 CEST
65c2b74e-30cb-4b9f-bae1-cb5665b7dace
2011-05-20 21:25:07.4 CEST
d34b08c7-65e2-463a-8a10-963cb43c3417
2011-05-20 19:12:19.780 CEST
6ceb291e-e640-4b1b-b8d9-3d13356e48bc
2011-06-14 14:56:25.317 CEST
Remove compression from compressed TIFF files
2011-06-14 11:55:00.198 CEST
a82b096a-deea-43e4-92c2-f11897cfe3e3
2011-06-13 14:31:03.884 CEST
742a958f-d36a-4701-b5f5-f97dbd058949
2011-06-14 10:40:47.603 CEST
b6c6a7b6-18dc-41b8-ae8d-91f7b973dfa9
2011-06-14 11:44:44.262 CEST
959ba3c2-3d9f-4b10-9d8c-f88fb0f4ccc9
2011-06-13 14:36:24.68 CEST
29726383-9d41-4520-816c-a1f14c703485
2011-06-14 10:53:32.263 CEST
f3348811-d253-48e8-a843-c7b3dbdbf364
2011-06-14 11:20:02.572 CEST
414c4034-c801-4f9c-b1b5-ae04defc983c
2011-05-20 19:27:24.353 CEST
Sven Schlarb
2011-06-13 14:29:48.91 CEST
590d33da-4b4f-43bd-b80f-653ff515acb2
2011-06-14 11:17:05.740 CEST
986df3df-dc30-420f-be8b-901642259dc5
2011-06-14 14:49:51.858 CEST
9393e120-9359-4db8-8bca-fbedd857be2e
2011-05-24 20:27:07.349 CEST
8b0b7415-3f8b-444e-8ca6-e2a3ab442bfc
2011-06-14 10:11:29.531 CEST
7af32d26-7945-4f16-9f03-76541f23aaf3
2011-05-20 19:04:53.635 CEST
fd676fe3-5795-4e98-9e83-3ff98366f885
2011-05-20 19:46:33.32 CEST
38004f79-4752-4ed3-b193-2ee8145b320b
2011-06-08 12:09:42.493 CEST
05014386-cfca-49c8-9f32-04fbf6becdbc
2011-05-20 19:03:54.539 CEST
b8e3e12c-edcd-47c6-a809-7f729670f613
2011-05-24 20:18:20.830 CEST
c448ac22-cf14-43cc-8918-4f8ec5cd2cbf
2011-06-13 16:59:39.929 CEST
acfbe5e2-30f4-4a20-b464-4f9e7aacd0fe
2011-06-08 11:49:26.418 CEST
6aa27f1c-27bc-40fe-8f26-3ba127305c1e
2011-05-24 20:42:58.715 CEST
6683fbfd-cb69-49d6-a969-861b65e69fb4
2011-05-20 19:45:26.56 CEST
7000fc77-52a8-42fe-a745-82a708e6cf47
2011-05-20 20:04:15.462 CEST
870f91ba-c7c8-4a06-b57f-2c0471a87a52
2011-05-20 19:34:52.313 CEST
The workflow takes a list of TIFF images as input, identifies the "Group 4 Fax" comressed TIFF images and converts them to uncompressed TIFF images using GIMP. Finally it characterises the converted image.
2011-06-14 11:54:57.882 CEST
735faf55-ba64-4233-9575-754c0d1a8f38
2011-05-20 19:05:34.475 CEST
cef06a3d-6e6b-448c-9175-3421bc552440
2011-05-24 20:09:20.230 CEST
6d761be3-2598-4f02-a55c-47ca6ed2b28d
2011-05-20 19:16:55.194 CEST
64fd0adc-a20f-4f29-a15a-292e12d75dd7
2011-05-24 19:54:02.188 CEST
9d57aced-0792-4cc5-93c2-ef59694896d9
2011-06-08 11:40:30.735 CEST
e6e83a58-c482-43b3-b9f2-f6e5b6db19c4
2011-06-14 11:27:18.716 CEST
61c38721-268a-4112-8091-1b434efd0828
2011-05-20 21:21:10.589 CEST
94dc91a1-56c7-4fc1-a152-c2c8f537a4a8
2011-05-20 19:15:10.274 CEST
5e852dee-5735-479c-87e0-795dc9e2c685
2011-06-08 11:50:11.827 CEST
263dc828-87c6-4271-8b05-dd06b3abfc3b
2011-05-20 19:19:57.722 CEST
e6491f04-30e6-430f-b6d0-213e0ec3b8cd
2011-05-20 19:47:35.880 CEST
bc40b370-a673-4e85-a55f-77a27d3092d6
2011-06-08 12:03:48.600 CEST
502a83ee-2d56-4202-b672-d9e2c8f1dc63
2011-05-24 20:24:39.957 CEST
55d89e61-71a0-4f92-9238-f3a0e2445499
2011-06-14 10:40:57.778 CEST
d9f629b0-9130-4763-ba45-e397a5f24a91
2011-06-13 17:05:56.421 CEST
c182daa6-20a7-4e2d-9173-361fbcba956b
2011-06-08 11:42:40.698 CEST
8c6aa67f-cccc-4479-8504-b430e6a21e87
2011-05-24 19:54:49.135 CEST
4781657a-2148-43b3-86f8-0e1692169aa6
2011-05-20 19:46:19.288 CEST
5d4608e7-25bd-4a3c-bcf9-d769f308cbe8
2011-05-20 19:18:58.90 CEST
0384175d-5917-48b9-a2d1-d9b0b07bf8f4
2011-05-24 20:07:37.518 CEST
52761dd2-f95e-4b2b-8a3d-7a4fb9f29ca4
2011-06-14 17:44:02.560 CEST
d8eeab68-d1df-43fd-9ce8-9a29452e3a81
2011-06-08 12:06:10.608 CEST
2babaa95-daab-48fd-8a1e-61bf9a7564d6
2011-05-24 19:58:30.367 CEST
5347bc26-645d-4e46-a9dd-d196db1c9271
2011-05-24 20:01:48.199 CEST
ebd73727-fd5b-43fc-9745-5df8ffd5124a
2011-05-20 19:22:06.938 CEST
b2766403-ab64-4c58-8433-4e38d0812a19
2011-06-14 11:52:17.881 CEST
bda49262-0b32-47ab-bce1-eed86f14855a
2011-06-14 11:41:32.830 CEST
a2b6e9f7-440c-4032-bdb9-807e6bfb515b
2011-05-20 19:42:20.163 CEST
58d2897d-6e81-457c-9efc-f75ed27d290f
2011-05-20 19:13:55.2 CEST
f12ff27c-9eaa-4505-99c4-259bcea008fc
2011-06-14 14:52:25.452 CEST
bd857da1-aee2-4d6c-abb5-ae0db279873b
2011-05-20 19:06:56.434 CEST
053a6241-c703-4a1b-ae52-f3d2c7813589
2011-06-08 12:09:19.625 CEST
1aeaed9b-0e7e-4012-87d8-1de69bb7f719
2011-06-14 11:46:54.175 CEST
339e6600-5720-471e-b5cb-8073328e116d
2011-06-13 14:34:21.72 CEST
34b2e51d-9627-43f8-90d6-dfec69ab6fec
2011-05-20 19:23:43.34 CEST
dc5c6bc1-fc5c-4480-bf71-b0f20c030b78
2011-06-14 10:43:57.718 CEST
IMPACT_URL_to_ListinputUrl00
URL to a list with references to either images or ground truth files from the PRImA database. Typically this is the tinyurl obtained by using the download option of the shopping cart mechanism.
2011-02-18 00:10:03.214 CET
http://fue.onb.ac.at/impact/testdata/5_URLs_from_PRIMA_PAGE-XML_files.txt
2011-02-04 01:27:13.895 CET
listURL2Liststring0regex0split11net.sf.taverna.t2.activitieslocalworker-activity1.3-SNAPSHOTnet.sf.taverna.t2.activities.localworker.LocalworkerActivity
string
0
'text/plain'
java.lang.String
true
regex
0
'text/plain'
java.lang.String
true
split
1
1
workflow
org.embl.ebi.escience.scuflworkers.java.SplitByRegex
UserNameHere
2010-09-03 13:44:07.151 CEST
net.sf.taverna.t2.coreworkflowmodel-impl1.3-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.3-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.3-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokereadFilefileurl0filecontents00net.sf.taverna.t2.activitieslocalworker-activity1.3-SNAPSHOTnet.sf.taverna.t2.activities.localworker.LocalworkerActivity
fileurl
0
'text/plain'
java.lang.String
true
filecontents
0
'text/plain'
0
workflow
net.sourceforge.taverna.scuflworkers.io.TextFileReader
net.sf.taverna.t2.coreworkflowmodel-impl1.3-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.3-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.3-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokeregexvalue00net.sf.taverna.t2.activitiesstringconstant-activity1.3-SNAPSHOTnet.sf.taverna.t2.activities.stringconstant.StringConstantActivity
\n
net.sf.taverna.t2.coreworkflowmodel-impl1.3-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.3-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.3-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeURL2ListstringURL2ListregexreadFilefileurllist
db5e468a-1ace-4b71-a928-cc90ea1563e4
2011-02-02 22:13:34.393 CET
IMPACT
2011-02-02 22:06:53.669 CET
IMPACT URL to List
2011-02-18 00:10:24.685 CET
ebb7de4f-434e-4aaf-8ae1-25bf54ebd2e8
2011-02-02 22:12:51.357 CET
Read a URL with references to files and convert them into a list suitable for processing with Taverna.
2011-02-18 00:10:58.415 CET
fef6695d-e68d-4387-8ba2-aeb6ea049d1c
2010-07-21 15:22:56.298 CEST
e38d16b8-698b-4892-bf62-52f2466faea8
2010-09-03 13:44:44.53 CEST
f7c1877e-4817-4fdc-9001-5822f9797cb4
2011-02-04 01:27:14.65 CET
e06b2577-f49c-4dfb-bc2e-c142d6b949df
2010-09-06 11:01:30.551 CEST
4fa5dc6c-f4a1-491b-a3af-084aa98e1621
2011-02-02 22:13:51.528 CET
8e9da86b-cddc-4bdf-8a27-cdfc3e4391f0
2010-07-21 15:22:26.863 CEST
364a2fa1-7f73-46c1-abe3-1078823b4a71
2011-02-18 00:11:38.511 CET