Remove_compression_from_compressed_TIFF_filesurl_to_textfile_with_image_urls00 http://fue.onb.ac.at/tmp/aqua/list.txt 2011-06-13 16:59:21.45 CEST URL of a textfile that contains a list of urls serving as the input of this workflow. It contains compressed and uncompressed images. 2011-06-14 11:52:14.951 CEST convert_compression00 0 2011-06-14 11:24:39.522 CEST Compression that should be applied to the result images list - usually 0 means: remove compression. Value range: integer from 1-6. Meaning of values := None (0), LZW (1), PACKBITS(2), DEFLATE (3), JPEG (4), CCITT G3 Fax (5), CCITT G4 Fax (6)) 2011-06-14 11:44:42.770 CEST convert_numcolors00 Number of colors (2-256) 2011-06-14 11:25:05.725 CEST 2 2011-06-14 14:53:03.585 CEST csresult_regex00 Regular expression for the compression scheme value 2011-06-14 14:49:18.9 CEST .*Group 4 Fax.* 2011-06-14 14:48:32.308 CEST 2_group_4_fax_compressed_images1_characterisation_result Characterisation result 2011-06-14 14:56:40.424 CEST 3_uncompressed_result_image4_gimp_processing_log5_uncompressed_characterisationGet_list_of_imagesinputUrl0list11net.sf.taverna.t2.activitiesdataflow-activity1.3-SNAPSHOTnet.sf.taverna.t2.activities.dataflow.DataflowActivitynet.sf.taverna.t2.coreworkflowmodel-impl1.3-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.3-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.3-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokecharacteriseFilepart10part100net.sf.taverna.t2.activitieswsdl-activity1.3-SNAPSHOTnet.sf.taverna.t2.activities.wsdl.WSDLActivity http://fue.onb.ac.at/scape-services/services/SCAPEFits050Service?wsdl characteriseFile HTTPBasicAuthNPlainTextPassword net.sf.taverna.t2.coreworkflowmodel-impl1.3-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.3-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.3-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokecharacteriseFile_part1inputFile0output00net.sf.taverna.t2.activitieswsdl-activity1.3-SNAPSHOTnet.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLInputSplitterActivity inputFile 0 'text/plain' false output 0 'text/xml' 0 <s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="Request" name="part1" qname="{http://org/opflabs/scape/tb}Request"><s:elements><s:basetype optional="false" unbounded="false" typename="anyURI" name="inputFile" qname="{http://org/opflabs/scape/tb}RequestType&gt;inputFile" /></s:elements></s:complextype></s:extensions> net.sf.taverna.t2.coreworkflowmodel-impl1.3-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.3-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.3-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokecharacteriseFile_part1_2input0outputFile00net.sf.taverna.t2.activitieswsdl-activity1.3-SNAPSHOTnet.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLOutputSplitterActivity input 0 'text/xml' java.lang.String false outputFile 0 'text/plain' 0 success 0 'text/plain' 0 processingUnit 0 'text/plain' 0 processingLog 0 'text/plain' 0 <s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="Response" name="part1" qname="{http://org/opflabs/scape/tb}Response"><s:elements><s:basetype optional="true" unbounded="false" typename="anyURI" name="outputFile" qname="{http://org/opflabs/scape/tb}ResponseType&gt;outputFile" /><s:basetype optional="false" unbounded="false" typename="boolean" name="success" qname="{http://org/opflabs/scape/tb}ResponseType&gt;success" /><s:basetype optional="false" unbounded="false" typename="string" name="processingUnit" qname="{http://org/opflabs/scape/tb}ResponseType&gt;processingUnit" /><s:basetype optional="false" unbounded="false" typename="string" name="processingLog" qname="{http://org/opflabs/scape/tb}ResponseType&gt;processingLog" /></s:elements></s:complextype></s:extensions> net.sf.taverna.t2.coreworkflowmodel-impl1.3-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.3-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.3-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeXPath_Servicexml_text0nodelist11net.sf.taverna.t2.activitiesxpath-activity1.3-SNAPSHOTnet.sf.taverna.t2.activities.xpath.XPathActivity <?xml version="1.0" encoding="UTF-8"?> <fits xmlns="http://hul.harvard.edu/ois/xml/ns/fits/fits_output" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://hul.harvard.edu/ois/xml/ns/fits/fits_output http://hul.harvard.edu/ois/xml/xsd/fits/fits_output.xsd" version="0.5.0" timestamp="13.06.11 16:54"> <identification status="CONFLICT"> <identity format="Tagged Image File Format" mimetype="image/tiff"> <tool toolname="Jhove" toolversion="1.5"/> <tool toolname="Droid" toolversion="3.0"/> <tool toolname="file utility" toolversion="4.26"/> <tool toolname="NLNZ Metadata Extractor" toolversion="3.4GA"/> <tool toolname="ffident" toolversion="0.2"/> <version toolname="Jhove" toolversion="1.5" status="CONFLICT">5.0</version> <version toolname="Droid" toolversion="3.0" status="CONFLICT">3</version> <version toolname="Droid" toolversion="3.0" status="CONFLICT">4</version> <version toolname="Droid" toolversion="3.0" status="CONFLICT">6</version> <externalIdentifier toolname="Droid" toolversion="3.0" type="puid">fmt/7</externalIdentifier> <externalIdentifier toolname="Droid" toolversion="3.0" type="puid">fmt/8</externalIdentifier> <externalIdentifier toolname="Droid" toolversion="3.0" type="puid">fmt/9</externalIdentifier> <externalIdentifier toolname="Droid" toolversion="3.0" type="puid">fmt/10</externalIdentifier> </identity> <identity format="TIFF EXIF" mimetype="image/tiff"> <tool toolname="Exiftool" toolversion="7.74"/> </identity> </identification> <fileinfo> <size toolname="Jhove" toolversion="1.5">146462</size> <creatingApplicationName toolname="Jhove" toolversion="1.5">SRZ Proscan Book V2.1.44</creatingApplicationName> <lastmodified toolname="Exiftool" toolversion="7.74" status="SINGLE_RESULT">2011:06:13 16:54:21+02:00</lastmodified> <filename toolname="OIS File Information" toolversion="0.1" status="SINGLE_RESULT">/usr/local/java/apache-tomcat-6.0.26/temp/fits050-tmp-store/fromurl5856905574101931580.tif</filename> <md5checksum toolname="OIS File Information" toolversion="0.1" status="SINGLE_RESULT">3f2f48316ed25282f605ca2bcc00a003</md5checksum> <fslastmodified toolname="OIS File Information" toolversion="0.1" status="SINGLE_RESULT">1307976861000</fslastmodified> </fileinfo> <filestatus> <well-formed toolname="Jhove" toolversion="1.5" status="SINGLE_RESULT">true</well-formed> <valid toolname="Jhove" toolversion="1.5" status="SINGLE_RESULT">true</valid> </filestatus> <metadata> <image> <byteOrder toolname="Jhove" toolversion="1.5" status="SINGLE_RESULT">little endian</byteOrder> <compressionScheme toolname="Jhove" toolversion="1.5">T6/Group 4 Fax</compressionScheme> <imageWidth toolname="Jhove" toolversion="1.5">2960</imageWidth> <imageHeight toolname="Jhove" toolversion="1.5">4715</imageHeight> <colorSpace toolname="Jhove" toolversion="1.5">WhiteIsZero</colorSpace> <orientation toolname="Jhove" toolversion="1.5" status="SINGLE_RESULT">normal*</orientation> <samplingFrequencyUnit toolname="Jhove" toolversion="1.5">in.</samplingFrequencyUnit> <xSamplingFrequency toolname="Jhove" toolversion="1.5">400</xSamplingFrequency> <ySamplingFrequency toolname="Jhove" toolversion="1.5">400</ySamplingFrequency> <bitsPerSample toolname="Jhove" toolversion="1.5">1</bitsPerSample> <samplesPerPixel toolname="Jhove" toolversion="1.5" status="SINGLE_RESULT">1</samplesPerPixel> <imageProducer toolname="Jhove" toolversion="1.5" status="SINGLE_RESULT">Cambridge University Library</imageProducer> <scanningSoftwareName toolname="Jhove" toolversion="1.5" status="SINGLE_RESULT">SRZ Proscan Book V2.1.44</scanningSoftwareName> </image> </metadata> </fits> /default:fits/default:metadata/default:image/default:compressionScheme default http://hul.harvard.edu/ois/xml/ns/fits/fits_output xsi http://www.w3.org/2001/XMLSchema-instance net.sf.taverna.t2.coreworkflowmodel-impl1.3-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.3-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.3-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeRead_Text_Filefileurl0filecontents00net.sf.taverna.t2.activitieslocalworker-activity1.3-SNAPSHOTnet.sf.taverna.t2.activities.localworker.LocalworkerActivity fileurl 0 'text/plain' java.lang.String true encoding 0 'text/plain' java.lang.String true filecontents 0 'text/plain' 0 workflow net.sourceforge.taverna.scuflworkers.io.TextFileReader net.sf.taverna.t2.coreworkflowmodel-impl1.3-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.3-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.3-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeFlatten_Listinputlist2outputlist11net.sf.taverna.t2.activitieslocalworker-activity1.3-SNAPSHOTnet.sf.taverna.t2.activities.localworker.LocalworkerActivity inputlist 2 l(l('')) [B true outputlist 1 l('') 1 workflow org.embl.ebi.escience.scuflworkers.java.FlattenList net.sf.taverna.t2.coreworkflowmodel-impl1.3-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.3-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.3-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeBeanshelltiff_images_in_list1charactres_in_list1csresult_regex0tiff_images_out_list11net.sf.taverna.t2.activitiesbeanshell-activity1.3-SNAPSHOTnet.sf.taverna.t2.activities.beanshell.BeanshellActivity tiff_images_in_list 1 text/plain java.lang.String true charactres_in_list 1 text/plain java.lang.String true csresult_regex 0 text/plain java.lang.String true tiff_images_out_list 1 1 workflow net.sf.taverna.t2.coreworkflowmodel-impl1.3-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.3-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.3-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeconvertTIFFtoTIFFByUrlpart10part100net.sf.taverna.t2.activitieswsdl-activity1.3-SNAPSHOTnet.sf.taverna.t2.activities.wsdl.WSDLActivity https://fue.onb.ac.at/axis2-l/services/IMPACTGimpImageConversionService?wsdl convertTIFFtoTIFFByUrl net.sf.taverna.t2.coreworkflowmodel-impl1.3-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.3-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.3-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeconvertTIFFtoTIFFByUrl_part1compression0numColors0inputUrl0output00net.sf.taverna.t2.activitieswsdl-activity1.3-SNAPSHOTnet.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLInputSplitterActivity numColors 0 'text/plain' false compression 0 'text/plain' false inputUrl 0 'text/plain' false output 0 'text/xml' 0 <s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="ByUrlTiffRequest" name="part1" qname="{http://iif.impact-project.eu/}ByUrlTiffRequest"><s:elements><s:basetype optional="true" unbounded="false" typename="int" name="numColors" qname="{http://iif.impact-project.eu/}ByUrlTiffRequestType&gt;numColors" /><s:basetype optional="true" unbounded="false" typename="int" name="compression" qname="{http://iif.impact-project.eu/}ByUrlTiffRequestType&gt;compression" /><s:basetype optional="false" unbounded="false" typename="anyURI" name="inputUrl" qname="{http://iif.impact-project.eu/}ByUrlTiffRequestType&gt;inputUrl" /></s:elements></s:complextype></s:extensions> net.sf.taverna.t2.coreworkflowmodel-impl1.3-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.3-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.3-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeconvertTIFFtoTIFFByUrl_part1_2input0outputUrl00processingLog00net.sf.taverna.t2.activitieswsdl-activity1.3-SNAPSHOTnet.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLOutputSplitterActivity input 0 'text/xml' java.lang.String false success 0 'text/plain' 0 returncode 0 'text/plain' 0 message 0 'text/plain' 0 toolProcessingTime 0 'text/plain' 0 processingUnit 0 'text/plain' 0 processingLog 0 'text/plain' 0 outputUrl 0 'text/plain' 0 <s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="ByUrlResponse" name="part1" qname="{http://iif.impact-project.eu/}ByUrlResponse"><s:elements><s:basetype optional="false" unbounded="false" typename="boolean" name="success" qname="{http://iif.impact-project.eu/}ByUrlResponseType&gt;success" /><s:basetype optional="false" unbounded="false" typename="int" name="returncode" qname="{http://iif.impact-project.eu/}ByUrlResponseType&gt;returncode" /><s:basetype optional="false" unbounded="false" typename="string" name="message" qname="{http://iif.impact-project.eu/}ByUrlResponseType&gt;message" /><s:basetype optional="false" unbounded="false" typename="int" name="toolProcessingTime" qname="{http://iif.impact-project.eu/}ByUrlResponseType&gt;toolProcessingTime" /><s:basetype optional="false" unbounded="false" typename="string" name="processingUnit" qname="{http://iif.impact-project.eu/}ByUrlResponseType&gt;processingUnit" /><s:basetype optional="false" unbounded="false" typename="string" name="processingLog" qname="{http://iif.impact-project.eu/}ByUrlResponseType&gt;processingLog" /><s:basetype optional="true" unbounded="false" typename="anyURI" name="outputUrl" qname="{http://iif.impact-project.eu/}ByUrlResponseType&gt;outputUrl" /></s:elements></s:complextype></s:extensions> net.sf.taverna.t2.coreworkflowmodel-impl1.3-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.3-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.3-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeGet_Image_From_URLurl0image00net.sf.taverna.t2.activitieslocalworker-activity1.3-SNAPSHOTnet.sf.taverna.t2.activities.localworker.LocalworkerActivity url 0 'text/x-taverna-web-url' java.lang.String true base 0 'text/x-taverna-web-url' java.lang.String true image 0 'image/*' 0 workflow org.embl.ebi.escience.scuflworkers.java.WebImageFetcher net.sf.taverna.t2.coreworkflowmodel-impl1.3-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.3-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.3-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokecharacteriseFile_2part10part100net.sf.taverna.t2.activitieswsdl-activity1.3-SNAPSHOTnet.sf.taverna.t2.activities.wsdl.WSDLActivity http://fue.onb.ac.at/scape-services/services/SCAPEFits050Service?wsdl characteriseFile HTTPBasicAuthNPlainTextPassword net.sf.taverna.t2.coreworkflowmodel-impl1.3-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.3-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.3-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokecharacteriseFile_2_part1inputFile0output00net.sf.taverna.t2.activitieswsdl-activity1.3-SNAPSHOTnet.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLInputSplitterActivity inputFile 0 'text/plain' false output 0 'text/xml' 0 <s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="Request" name="part1" qname="{http://org/opflabs/scape/tb}Request"><s:elements><s:basetype optional="false" unbounded="false" typename="anyURI" name="inputFile" qname="{http://org/opflabs/scape/tb}RequestType&gt;inputFile" /></s:elements></s:complextype></s:extensions> net.sf.taverna.t2.coreworkflowmodel-impl1.3-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.3-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.3-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokecharacteriseFile_2_part1_2input0outputFile00net.sf.taverna.t2.activitieswsdl-activity1.3-SNAPSHOTnet.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLOutputSplitterActivity input 0 'text/xml' java.lang.String false outputFile 0 'text/plain' 0 success 0 'text/plain' 0 processingUnit 0 'text/plain' 0 processingLog 0 'text/plain' 0 <s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="Response" name="part1" qname="{http://org/opflabs/scape/tb}Response"><s:elements><s:basetype optional="true" unbounded="false" typename="anyURI" name="outputFile" qname="{http://org/opflabs/scape/tb}ResponseType&gt;outputFile" /><s:basetype optional="false" unbounded="false" typename="boolean" name="success" qname="{http://org/opflabs/scape/tb}ResponseType&gt;success" /><s:basetype optional="false" unbounded="false" typename="string" name="processingUnit" qname="{http://org/opflabs/scape/tb}ResponseType&gt;processingUnit" /><s:basetype optional="false" unbounded="false" typename="string" name="processingLog" qname="{http://org/opflabs/scape/tb}ResponseType&gt;processingLog" /></s:elements></s:complextype></s:extensions> net.sf.taverna.t2.coreworkflowmodel-impl1.3-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.3-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.3-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeRead_Text_File_2fileurl0filecontents00net.sf.taverna.t2.activitieslocalworker-activity1.3-SNAPSHOTnet.sf.taverna.t2.activities.localworker.LocalworkerActivity fileurl 0 'text/plain' java.lang.String true encoding 0 'text/plain' java.lang.String true filecontents 0 'text/plain' 0 workflow net.sourceforge.taverna.scuflworkers.io.TextFileReader net.sf.taverna.t2.coreworkflowmodel-impl1.3-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.3-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.3-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeGet_list_of_imagesinputUrlurl_to_textfile_with_image_urlscharacteriseFilepart1characteriseFile_part1outputcharacteriseFile_part1inputFileGet_list_of_imageslistcharacteriseFile_part1_2inputcharacteriseFilepart1XPath_Servicexml_textRead_Text_FilefilecontentsRead_Text_FilefileurlcharacteriseFile_part1_2outputFileFlatten_ListinputlistXPath_ServicenodelistBeanshelltiff_images_in_listGet_list_of_imageslistBeanshellcharactres_in_listFlatten_ListoutputlistBeanshellcsresult_regexcsresult_regexconvertTIFFtoTIFFByUrlpart1convertTIFFtoTIFFByUrl_part1outputconvertTIFFtoTIFFByUrl_part1compressionconvert_compressionconvertTIFFtoTIFFByUrl_part1numColorsconvert_numcolorsconvertTIFFtoTIFFByUrl_part1inputUrlBeanshelltiff_images_out_listconvertTIFFtoTIFFByUrl_part1_2inputconvertTIFFtoTIFFByUrlpart1Get_Image_From_URLurlconvertTIFFtoTIFFByUrl_part1_2outputUrlcharacteriseFile_2part1characteriseFile_2_part1outputcharacteriseFile_2_part1inputFileconvertTIFFtoTIFFByUrl_part1_2outputUrlcharacteriseFile_2_part1_2inputcharacteriseFile_2part1Read_Text_File_2fileurlcharacteriseFile_2_part1_2outputFile2_group_4_fax_compressed_imagesBeanshelltiff_images_out_list1_characterisation_resultFlatten_Listoutputlist3_uncompressed_result_imageGet_Image_From_URLimage4_gimp_processing_logconvertTIFFtoTIFFByUrl_part1_2processingLog5_uncompressed_characterisationRead_Text_File_2filecontents 6cd82798-ec87-4184-90f0-4976838596db 2011-05-20 19:22:35.730 CEST b8814a5c-878a-4535-bc28-8fa5ca68e877 2011-05-20 19:21:14.650 CEST bb2d377d-c2b0-4c56-a24d-07779268711d 2011-05-24 19:57:28.326 CEST 952fb021-f9cb-4c0e-aa6e-d490a0030803 2011-06-14 10:49:10.500 CEST 1408beac-5169-4434-90a3-93c8c0178612 2011-06-14 11:55:00.393 CEST b1bfdb56-f5c7-4073-b2e1-581e3dbb1e4f 2011-05-24 20:11:51.822 CEST a43a502c-f6de-4927-8cbd-7b676c5687a5 2011-05-24 19:59:15.479 CEST 67cfd9b3-1c02-4804-851e-7d20ab9e8ecc 2011-05-20 19:01:29.927 CEST 44cb2ccd-a2bb-4af7-9023-be82c454a7af 2011-06-14 14:56:41.626 CEST 670cc62b-be83-4332-bd17-f3121a8946fd 2011-05-20 19:24:20.754 CEST c530a2b8-a230-4799-97d7-4290eed28b56 2011-06-13 17:07:17.331 CEST af20eff3-a496-43be-b399-e25761e9bf64 2011-05-24 20:19:08.557 CEST 4b5befbe-7445-4885-afba-99391adebcf8 2011-05-20 19:54:00.855 CEST ee29adcc-ec1a-40f5-bdf1-f93f8c560753 2011-06-14 14:53:04.976 CEST 5b7477df-53a1-45fa-8b61-e133690b783a 2011-05-20 19:19:17.530 CEST 8ca7fc2f-ad35-4cf1-821a-0819a34eda0d 2011-05-24 20:05:44.382 CEST 9dbfec2f-b0c4-4a13-a74e-38db19981461 2011-05-20 19:44:45.912 CEST 2c05e055-502f-498e-922d-b03c0de6ba6e 2011-05-20 19:29:29.153 CEST f83d86a2-37a3-4ac8-8050-36a8ba1b008e 2011-05-24 20:03:09.295 CEST 65c2b74e-30cb-4b9f-bae1-cb5665b7dace 2011-05-20 21:25:07.4 CEST d34b08c7-65e2-463a-8a10-963cb43c3417 2011-05-20 19:12:19.780 CEST 6ceb291e-e640-4b1b-b8d9-3d13356e48bc 2011-06-14 14:56:25.317 CEST Remove compression from compressed TIFF files 2011-06-14 11:55:00.198 CEST a82b096a-deea-43e4-92c2-f11897cfe3e3 2011-06-13 14:31:03.884 CEST 742a958f-d36a-4701-b5f5-f97dbd058949 2011-06-14 10:40:47.603 CEST b6c6a7b6-18dc-41b8-ae8d-91f7b973dfa9 2011-06-14 11:44:44.262 CEST 959ba3c2-3d9f-4b10-9d8c-f88fb0f4ccc9 2011-06-13 14:36:24.68 CEST 29726383-9d41-4520-816c-a1f14c703485 2011-06-14 10:53:32.263 CEST f3348811-d253-48e8-a843-c7b3dbdbf364 2011-06-14 11:20:02.572 CEST 414c4034-c801-4f9c-b1b5-ae04defc983c 2011-05-20 19:27:24.353 CEST Sven Schlarb 2011-06-13 14:29:48.91 CEST 590d33da-4b4f-43bd-b80f-653ff515acb2 2011-06-14 11:17:05.740 CEST 986df3df-dc30-420f-be8b-901642259dc5 2011-06-14 14:49:51.858 CEST 9393e120-9359-4db8-8bca-fbedd857be2e 2011-05-24 20:27:07.349 CEST 8b0b7415-3f8b-444e-8ca6-e2a3ab442bfc 2011-06-14 10:11:29.531 CEST 7af32d26-7945-4f16-9f03-76541f23aaf3 2011-05-20 19:04:53.635 CEST fd676fe3-5795-4e98-9e83-3ff98366f885 2011-05-20 19:46:33.32 CEST 38004f79-4752-4ed3-b193-2ee8145b320b 2011-06-08 12:09:42.493 CEST 05014386-cfca-49c8-9f32-04fbf6becdbc 2011-05-20 19:03:54.539 CEST b8e3e12c-edcd-47c6-a809-7f729670f613 2011-05-24 20:18:20.830 CEST c448ac22-cf14-43cc-8918-4f8ec5cd2cbf 2011-06-13 16:59:39.929 CEST acfbe5e2-30f4-4a20-b464-4f9e7aacd0fe 2011-06-08 11:49:26.418 CEST 6aa27f1c-27bc-40fe-8f26-3ba127305c1e 2011-05-24 20:42:58.715 CEST 6683fbfd-cb69-49d6-a969-861b65e69fb4 2011-05-20 19:45:26.56 CEST 7000fc77-52a8-42fe-a745-82a708e6cf47 2011-05-20 20:04:15.462 CEST 870f91ba-c7c8-4a06-b57f-2c0471a87a52 2011-05-20 19:34:52.313 CEST The workflow takes a list of TIFF images as input, identifies the "Group 4 Fax" comressed TIFF images and converts them to uncompressed TIFF images using GIMP. Finally it characterises the converted image. 2011-06-14 11:54:57.882 CEST 735faf55-ba64-4233-9575-754c0d1a8f38 2011-05-20 19:05:34.475 CEST cef06a3d-6e6b-448c-9175-3421bc552440 2011-05-24 20:09:20.230 CEST 6d761be3-2598-4f02-a55c-47ca6ed2b28d 2011-05-20 19:16:55.194 CEST 64fd0adc-a20f-4f29-a15a-292e12d75dd7 2011-05-24 19:54:02.188 CEST 9d57aced-0792-4cc5-93c2-ef59694896d9 2011-06-08 11:40:30.735 CEST e6e83a58-c482-43b3-b9f2-f6e5b6db19c4 2011-06-14 11:27:18.716 CEST 61c38721-268a-4112-8091-1b434efd0828 2011-05-20 21:21:10.589 CEST 94dc91a1-56c7-4fc1-a152-c2c8f537a4a8 2011-05-20 19:15:10.274 CEST 5e852dee-5735-479c-87e0-795dc9e2c685 2011-06-08 11:50:11.827 CEST 263dc828-87c6-4271-8b05-dd06b3abfc3b 2011-05-20 19:19:57.722 CEST e6491f04-30e6-430f-b6d0-213e0ec3b8cd 2011-05-20 19:47:35.880 CEST bc40b370-a673-4e85-a55f-77a27d3092d6 2011-06-08 12:03:48.600 CEST 502a83ee-2d56-4202-b672-d9e2c8f1dc63 2011-05-24 20:24:39.957 CEST 55d89e61-71a0-4f92-9238-f3a0e2445499 2011-06-14 10:40:57.778 CEST d9f629b0-9130-4763-ba45-e397a5f24a91 2011-06-13 17:05:56.421 CEST c182daa6-20a7-4e2d-9173-361fbcba956b 2011-06-08 11:42:40.698 CEST 8c6aa67f-cccc-4479-8504-b430e6a21e87 2011-05-24 19:54:49.135 CEST 4781657a-2148-43b3-86f8-0e1692169aa6 2011-05-20 19:46:19.288 CEST 5d4608e7-25bd-4a3c-bcf9-d769f308cbe8 2011-05-20 19:18:58.90 CEST 0384175d-5917-48b9-a2d1-d9b0b07bf8f4 2011-05-24 20:07:37.518 CEST 52761dd2-f95e-4b2b-8a3d-7a4fb9f29ca4 2011-06-14 17:44:02.560 CEST d8eeab68-d1df-43fd-9ce8-9a29452e3a81 2011-06-08 12:06:10.608 CEST 2babaa95-daab-48fd-8a1e-61bf9a7564d6 2011-05-24 19:58:30.367 CEST 5347bc26-645d-4e46-a9dd-d196db1c9271 2011-05-24 20:01:48.199 CEST ebd73727-fd5b-43fc-9745-5df8ffd5124a 2011-05-20 19:22:06.938 CEST b2766403-ab64-4c58-8433-4e38d0812a19 2011-06-14 11:52:17.881 CEST bda49262-0b32-47ab-bce1-eed86f14855a 2011-06-14 11:41:32.830 CEST a2b6e9f7-440c-4032-bdb9-807e6bfb515b 2011-05-20 19:42:20.163 CEST 58d2897d-6e81-457c-9efc-f75ed27d290f 2011-05-20 19:13:55.2 CEST f12ff27c-9eaa-4505-99c4-259bcea008fc 2011-06-14 14:52:25.452 CEST bd857da1-aee2-4d6c-abb5-ae0db279873b 2011-05-20 19:06:56.434 CEST 053a6241-c703-4a1b-ae52-f3d2c7813589 2011-06-08 12:09:19.625 CEST 1aeaed9b-0e7e-4012-87d8-1de69bb7f719 2011-06-14 11:46:54.175 CEST 339e6600-5720-471e-b5cb-8073328e116d 2011-06-13 14:34:21.72 CEST 34b2e51d-9627-43f8-90d6-dfec69ab6fec 2011-05-20 19:23:43.34 CEST dc5c6bc1-fc5c-4480-bf71-b0f20c030b78 2011-06-14 10:43:57.718 CEST IMPACT_URL_to_ListinputUrl00 URL to a list with references to either images or ground truth files from the PRImA database. Typically this is the tinyurl obtained by using the download option of the shopping cart mechanism. 2011-02-18 00:10:03.214 CET http://fue.onb.ac.at/impact/testdata/5_URLs_from_PRIMA_PAGE-XML_files.txt 2011-02-04 01:27:13.895 CET listURL2Liststring0regex0split11net.sf.taverna.t2.activitieslocalworker-activity1.3-SNAPSHOTnet.sf.taverna.t2.activities.localworker.LocalworkerActivity string 0 'text/plain' java.lang.String true regex 0 'text/plain' java.lang.String true split 1 1 workflow org.embl.ebi.escience.scuflworkers.java.SplitByRegex UserNameHere 2010-09-03 13:44:07.151 CEST net.sf.taverna.t2.coreworkflowmodel-impl1.3-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.3-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.3-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokereadFilefileurl0filecontents00net.sf.taverna.t2.activitieslocalworker-activity1.3-SNAPSHOTnet.sf.taverna.t2.activities.localworker.LocalworkerActivity fileurl 0 'text/plain' java.lang.String true filecontents 0 'text/plain' 0 workflow net.sourceforge.taverna.scuflworkers.io.TextFileReader net.sf.taverna.t2.coreworkflowmodel-impl1.3-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.3-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.3-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokeregexvalue00net.sf.taverna.t2.activitiesstringconstant-activity1.3-SNAPSHOTnet.sf.taverna.t2.activities.stringconstant.StringConstantActivity \n net.sf.taverna.t2.coreworkflowmodel-impl1.3-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.3-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.3-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeURL2ListstringreadFilefilecontentsURL2ListregexregexvaluereadFilefileurlinputUrllistURL2Listsplit db5e468a-1ace-4b71-a928-cc90ea1563e4 2011-02-02 22:13:34.393 CET IMPACT 2011-02-02 22:06:53.669 CET IMPACT URL to List 2011-02-18 00:10:24.685 CET ebb7de4f-434e-4aaf-8ae1-25bf54ebd2e8 2011-02-02 22:12:51.357 CET Read a URL with references to files and convert them into a list suitable for processing with Taverna. 2011-02-18 00:10:58.415 CET fef6695d-e68d-4387-8ba2-aeb6ea049d1c 2010-07-21 15:22:56.298 CEST e38d16b8-698b-4892-bf62-52f2466faea8 2010-09-03 13:44:44.53 CEST f7c1877e-4817-4fdc-9001-5822f9797cb4 2011-02-04 01:27:14.65 CET e06b2577-f49c-4dfb-bc2e-c142d6b949df 2010-09-06 11:01:30.551 CEST 4fa5dc6c-f4a1-491b-a3af-084aa98e1621 2011-02-02 22:13:51.528 CET 8e9da86b-cddc-4bdf-8a27-cdfc3e4391f0 2010-07-21 15:22:26.863 CEST 364a2fa1-7f73-46c1-abe3-1078823b4a71 2011-02-18 00:11:38.511 CET