DAS sequence retrieval and parsing with JDAS

Script

import uk.ac.ebi.das.jdas.schema.sequence.DASSEQUENCE;
import uk.ac.ebi.das.jdas.schema.sequence.SEQUENCE;
import uk.ac.ebi.das.jdas.adapters.sequence.DasSequenceAdapter;

import javax.xml.bind.JAXBContext;
import javax.xml.bind.Unmarshaller;
import java.io.ByteArrayInputStream;

/* Use JAXB and JDAS to parse the DAS format*/
String sequenceText = "";
ByteArrayInputStream input = new ByteArrayInputStream(sequenceXML.getBytes());
JAXBContext jc = JAXBContext.newInstance("uk.ac.ebi.das.jdas.schema.sequence");
Unmarshaller unmarshaller = jc.createUnmarshaller();
DasSequenceAdapter dasSequence = new DasSequenceAdapter((DASSEQUENCE) unmarshaller.unmarshal(input));
SEQUENCE sequence = dasSequence.getSequence().get(0);

/* Chose what to print and how to print it */
String newline = "\n"; 
sequenceText += "id: " + sequence.getId() + newline;
sequenceText += "label: " + sequence.getLabel() + newline;
sequenceText += "start: " + sequence.getStart().toString() + newline;
sequenceText += "stop: " + sequence.getStop().toString() + newline;
sequenceText += "content: " + sequence.getContent() + newline;
sequenceText += "version: " + sequence.getVersion() + newline;

Script

List split = new ArrayList();
if (!string.equals("")) {
	String regexString = ",";
	if (regex != void) {
		regexString = regex;
	}
	String[] result = string.split(regexString);
	for (int i = 0; i < result.length; i++) {
		split.add(result[i].replaceAll(" ",""));
	}
}

Value