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Integrated Mapping and Assembly with Qualities (MAQ), SAMtools, Bowtie Workflow

Created: 2011-04-05 22:05:03      Last updated: 2011-04-05 22:05:11

This workflow contains the first step of a genomics data analysis protocol designed and implemented by Federica Torri, Fabio Macciardi and Ivo Dinov to process large number of sequence data outputted by the Illumina sequencing pipeline. See Step II analysis (GATK/QC/Cleaning) here.

This protocol is implemented using the LONI Pipeline environment and includes the following types of computational resources:

URL: http://www.loni.ucla.edu/twiki/bin/view/CCB/PipelineWorkflows_BioinfoMAQ

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In chronological order:

  1. Integrated Mapping and Assembly with Qualities (MAQ), SAMtools, Bowtie Workflow

    Created by Pipeline on Tuesday 05 April 2011 22:05:03 (UTC)



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