GO_Data_from_GO_IDparsed_uniprot00
File location of the parsed Uniprot results
2011-03-30 16:11:49.141 BST
File location of the parsed Uniprot results. To generate this file, see http://www.myexperiment.org/workflows/26.html
2011-03-30 16:14:06.340 BST
GO_Resultsget_identifiers_from_uniprot_2_2parsed_uniprot0identifier_name0out111net.sf.taverna.t2.activitiesbeanshell-activity1.2net.sf.taverna.t2.activities.beanshell.BeanshellActivity
workflow
java.lang.String
true
parsed_uniprot
0
text/plain
java.lang.String
true
identifier_name
0
text/plain
1
out1
1
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeEBI_OLS_TermInfoOntology_Id0Ontology_term00net.sf.taverna.t2.activitiesdataflow-activity1.2net.sf.taverna.t2.activities.dataflow.DataflowActivitynet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeGO_deXMLerin10out100net.sf.taverna.t2.activitiesbeanshell-activity1.2net.sf.taverna.t2.activities.beanshell.BeanshellActivity
workflow
java.lang.String
true
in1
0
text/plain
0
out1
0
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeGOvalue00net.sf.taverna.t2.activitiesstringconstant-activity1.2net.sf.taverna.t2.activities.stringconstant.StringConstantActivity
GO
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeMerge_String_List_to_a_Stringgo_defs1go_ids1concatenated00net.sf.taverna.t2.activitieslocalworker-activity1.2net.sf.taverna.t2.activities.localworker.LocalworkerActivity
org.embl.ebi.escience.scuflworkers.java.StringListMerge
workflow
java.lang.String
true
go_defs
1
l('text/plain')
java.lang.String
true
seperator
0
'text/plain'
java.lang.String
true
go_ids
1
text/plain
0
concatenated
0
UserNameHere
2011-03-30 16:27:49.467 BST
UserNameHere
2011-03-30 16:29:15.546 BST
UserNameHere
2011-03-30 16:25:55.280 BST
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokeget_identifiers_from_uniprot_2_2parsed_uniprotget_identifiers_from_uniprot_2_2identifier_nameEBI_OLS_TermInfoOntology_IdGO_deXMLerin1Merge_String_List_to_a_Stringgo_defsMerge_String_List_to_a_Stringgo_idsGO_Results
9e103ba0-8dce-4f23-a7f4-165bd80a8f93
2011-03-30 10:56:21.121 BST
fb843096-2675-4579-9a51-05f43e15ba79
2011-03-28 17:54:29.330 BST
0523fd65-210c-421c-a12d-86216a61de19
2011-03-30 16:14:43.704 BST
d7ce24f5-f65b-4b2b-8500-6d35cf027d1c
2011-03-28 19:02:12.80 BST
Untitled workflow #14
2011-03-28 16:28:59.317 BST
11d4d655-87f9-4a31-88f1-eef56a3a03ee
2011-03-28 16:58:53.309 BST
2011-04-01 11:54:33.870 BST
5f08104a-de65-423f-b532-dc7eb89c28ce
2011-03-28 16:39:56.913 BST
fda20a14-917b-454a-a88e-4d4cf58e24c6
2011-03-28 18:34:50.789 BST
a7da9321-f578-410e-93b3-2115c326a8d4
2011-03-30 16:15:18.613 BST
4ed40fd8-b13c-4aa2-8977-329988763674
2011-03-28 17:56:58.784 BST
bf867204-2ced-4bc2-9c7a-20da8438de9a
2011-04-01 11:55:51.865 BST
416a5592-70f9-4c5f-af15-397bd21af3cb
2011-03-28 19:15:54.482 BST
73ae7c45-6300-40e1-86c2-5da602996ff8
2011-03-30 10:59:35.473 BST
2011-03-30 16:14:48.557 BST
c88315af-4ce4-43fb-b48d-45cc0e9424b2
2011-03-28 18:57:59.270 BST
6ad18fe7-29cc-4cd2-ad50-6b2b62c7be8c
2011-03-30 16:23:46.939 BST
GO Data from GO ID
2011-03-30 16:15:03.966 BST
2011-03-28 16:28:59.317 BST
2011-04-01 11:54:34.135 BST
9fedbdd2-dde5-4b08-ab50-80991ea7c41c
2011-03-28 18:55:56.909 BST
7ae7f0a1-1f28-48e1-8c41-7c6da1587e3d
2011-03-28 16:34:34.815 BST
2011-03-28 16:28:59.317 BST
2011-03-30 16:15:18.518 BST
7f7920cf-259e-4947-8a28-bbd0bf0d5de4
2011-03-28 18:59:44.143 BST
f5c68892-7c8c-4bba-96cf-6e4094272de2
2011-03-28 18:51:46.105 BST
Used parsed Uniprot results (see workflow http://www.myexperiment.org/workflows/26.html) to retrieve results about the protein from Gene Ontology and outputs it in text format.
2011-04-01 11:55:40.31 BST
acd0a40b-a688-473f-8618-1bdbd2046096
2011-03-28 16:33:17.871 BST
19dbb793-e604-4c3c-82a6-e2fe1be4d084
2011-03-29 11:06:03.489 BST
3117ba0d-f09f-4956-ad74-7761dbf998d9
2011-03-28 19:18:13.311 BST
33afbd5c-d9a6-4e58-a255-ac744742875a
2011-03-28 18:38:03.893 BST
21781546-1ad8-4dea-81d0-6780a7ec9e66
2011-03-30 16:35:51.793 BST
ef9de97c-ca76-479e-b933-d396f043e138
2011-03-28 16:39:02.585 BST
e276142b-824b-4fca-94b4-5a7402085b73
2011-03-30 10:59:54.93 BST
b4078147-9bbb-45c3-a045-dc6090bf95bb
2011-03-30 11:01:16.668 BST
a129e83f-4d68-4d84-bb21-b7b2c29cdab9
2011-03-30 12:01:49.842 BST
473b328e-5f9a-4db9-b31a-c868afc8da4c
2011-03-30 10:55:52.642 BST
ff900e9f-7b8d-43fc-be47-cc638b4266d4
2011-03-28 19:00:51.178 BST
EBI_OLS_TermInfoOntology_Id00
text/plain
2011-03-30 10:54:12.634 BST
Ontology term identifier to retrive information about. For example: GO:0008150.
2011-03-30 10:54:12.634 BST
Ontology_term
text/plain
2011-03-30 10:54:12.634 BST
text/xml
2011-03-30 10:54:12.634 BST
getTermMetadataparameters0attachmentList11parameters00net.sf.taverna.t2.activitieswsdl-activity1.2net.sf.taverna.t2.activities.wsdl.WSDLActivity
http://www.ebi.ac.uk/ontology-lookup/OntologyQuery.wsdl
getTermMetadata
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
0
0
0
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeInput_parameterstermId0ontologyName0output00net.sf.taverna.t2.activitieswsdl-activity1.2net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLInputSplitterActivity
<s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="getTermMetadata" name="parameters" qname="{http://www.ebi.ac.uk/ontology-lookup/OntologyQuery}getTermMetadata"><s:elements><s:basetype optional="false" unbounded="false" typename="string" name="termId" qname="{http://www.ebi.ac.uk/ontology-lookup/OntologyQuery}>getTermMetadata>termId" /><s:basetype optional="false" unbounded="false" typename="string" name="ontologyName" qname="{http://www.ebi.ac.uk/ontology-lookup/OntologyQuery}>getTermMetadata>ontologyName" /></s:elements></s:complextype></s:extensions>
java.lang.String
true
termId
0
'text/plain'
java.lang.String
true
ontologyName
0
'text/plain'
0
output
0
'text/xml'
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
0
0
0
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeUnwrap_resultinput0getTermMetadataReturn00net.sf.taverna.t2.activitieswsdl-activity1.2net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLOutputSplitterActivity
<s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="getTermMetadataResponse" name="parameters" qname="{http://www.ebi.ac.uk/ontology-lookup/OntologyQuery}getTermMetadataResponse"><s:elements><s:arraytype optional="false" unbounded="false" wrapped="false" typename="Map" name="getTermMetadataReturn" qname="{http://www.ebi.ac.uk/ontology-lookup/OntologyQuery}>getTermMetadataResponse>getTermMetadataReturn"><s:elementtype><s:complextype optional="false" unbounded="false" typename="mapItem" name="" qname="{http://xml.apache.org/xml-soap}mapItem"><s:elements><s:basetype optional="false" unbounded="false" typename="anyType" name="key" qname="{http://xml.apache.org/xml-soap}mapItem>key" /><s:basetype optional="false" unbounded="false" typename="anyType" name="value" qname="{http://xml.apache.org/xml-soap}mapItem>value" /></s:elements></s:complextype></s:elementtype></s:arraytype></s:elements></s:complextype></s:extensions>
java.lang.String
true
input
0
'text/xml'
0
getTermMetadataReturn
0
'text/xml'
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
0
0
0
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeGOvalue00net.sf.taverna.t2.activitiesstringconstant-activity1.2net.sf.taverna.t2.activities.stringconstant.StringConstantActivity
GO
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokegetTermMetadataparametersInput_parameterstermIdInput_parametersontologyNameUnwrap_resultinputOntology_term
Hamish McWilliam
2011-03-30 10:54:12.659 BST
EBI_OLS_TermInfo
2011-03-30 10:54:12.659 BST
95e54190-f04b-4903-b7b1-11f40bb672de
2011-03-30 11:01:12.1 BST
5991ef38-c361-422d-82ab-5c100a76112c
2011-03-30 10:55:35.943 BST
4eaf1d8b-b3dc-478f-8337-bc4213714abb
2011-03-30 10:54:12.741 BST
672f9ccb-befa-40ea-ad98-ed1905681a36
2011-03-30 10:59:32.867 BST
Get details of an ontology term given its identifer.
This workflow uses the EBI's Ontology Lookup Service (OLS) to get the details of the ontology term. The OLS suports a wide range of biological and bioinformatic ontologies. See http://www.ebi.ac.uk/ontology-lookup/ for more information.
2011-03-30 10:54:12.659 BST