GO_Data_from_GO_IDparsed_uniprot00 File location of the parsed Uniprot results 2011-03-30 16:11:49.141 BST File location of the parsed Uniprot results. To generate this file, see http://www.myexperiment.org/workflows/26.html 2011-03-30 16:14:06.340 BST GO_Resultsget_identifiers_from_uniprot_2_2parsed_uniprot0identifier_name0out111net.sf.taverna.t2.activitiesbeanshell-activity1.2net.sf.taverna.t2.activities.beanshell.BeanshellActivity workflow java.lang.String true parsed_uniprot 0 text/plain java.lang.String true identifier_name 0 text/plain 1 out1 1 net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeEBI_OLS_TermInfoOntology_Id0Ontology_term00net.sf.taverna.t2.activitiesdataflow-activity1.2net.sf.taverna.t2.activities.dataflow.DataflowActivitynet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeGO_deXMLerin10out100net.sf.taverna.t2.activitiesbeanshell-activity1.2net.sf.taverna.t2.activities.beanshell.BeanshellActivity workflow java.lang.String true in1 0 text/plain 0 out1 0 net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeGOvalue00net.sf.taverna.t2.activitiesstringconstant-activity1.2net.sf.taverna.t2.activities.stringconstant.StringConstantActivity GO net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeMerge_String_List_to_a_Stringgo_defs1go_ids1concatenated00net.sf.taverna.t2.activitieslocalworker-activity1.2net.sf.taverna.t2.activities.localworker.LocalworkerActivity org.embl.ebi.escience.scuflworkers.java.StringListMerge workflow java.lang.String true go_defs 1 l('text/plain') java.lang.String true seperator 0 'text/plain' java.lang.String true go_ids 1 text/plain 0 concatenated 0 UserNameHere 2011-03-30 16:27:49.467 BST UserNameHere 2011-03-30 16:29:15.546 BST UserNameHere 2011-03-30 16:25:55.280 BST net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokeget_identifiers_from_uniprot_2_2parsed_uniprotparsed_uniprotget_identifiers_from_uniprot_2_2identifier_nameGOvalueEBI_OLS_TermInfoOntology_Idget_identifiers_from_uniprot_2_2out1GO_deXMLerin1EBI_OLS_TermInfoOntology_termMerge_String_List_to_a_Stringgo_defsGO_deXMLerout1Merge_String_List_to_a_Stringgo_idsget_identifiers_from_uniprot_2_2out1GO_ResultsMerge_String_List_to_a_Stringconcatenated 9e103ba0-8dce-4f23-a7f4-165bd80a8f93 2011-03-30 10:56:21.121 BST fb843096-2675-4579-9a51-05f43e15ba79 2011-03-28 17:54:29.330 BST 0523fd65-210c-421c-a12d-86216a61de19 2011-03-30 16:14:43.704 BST d7ce24f5-f65b-4b2b-8500-6d35cf027d1c 2011-03-28 19:02:12.80 BST Untitled workflow #14 2011-03-28 16:28:59.317 BST 11d4d655-87f9-4a31-88f1-eef56a3a03ee 2011-03-28 16:58:53.309 BST 2011-04-01 11:54:33.870 BST 5f08104a-de65-423f-b532-dc7eb89c28ce 2011-03-28 16:39:56.913 BST fda20a14-917b-454a-a88e-4d4cf58e24c6 2011-03-28 18:34:50.789 BST a7da9321-f578-410e-93b3-2115c326a8d4 2011-03-30 16:15:18.613 BST 4ed40fd8-b13c-4aa2-8977-329988763674 2011-03-28 17:56:58.784 BST bf867204-2ced-4bc2-9c7a-20da8438de9a 2011-04-01 11:55:51.865 BST 416a5592-70f9-4c5f-af15-397bd21af3cb 2011-03-28 19:15:54.482 BST 73ae7c45-6300-40e1-86c2-5da602996ff8 2011-03-30 10:59:35.473 BST 2011-03-30 16:14:48.557 BST c88315af-4ce4-43fb-b48d-45cc0e9424b2 2011-03-28 18:57:59.270 BST 6ad18fe7-29cc-4cd2-ad50-6b2b62c7be8c 2011-03-30 16:23:46.939 BST GO Data from GO ID 2011-03-30 16:15:03.966 BST 2011-03-28 16:28:59.317 BST 2011-04-01 11:54:34.135 BST 9fedbdd2-dde5-4b08-ab50-80991ea7c41c 2011-03-28 18:55:56.909 BST 7ae7f0a1-1f28-48e1-8c41-7c6da1587e3d 2011-03-28 16:34:34.815 BST 2011-03-28 16:28:59.317 BST 2011-03-30 16:15:18.518 BST 7f7920cf-259e-4947-8a28-bbd0bf0d5de4 2011-03-28 18:59:44.143 BST f5c68892-7c8c-4bba-96cf-6e4094272de2 2011-03-28 18:51:46.105 BST Used parsed Uniprot results (see workflow http://www.myexperiment.org/workflows/26.html) to retrieve results about the protein from Gene Ontology and outputs it in text format. 2011-04-01 11:55:40.31 BST acd0a40b-a688-473f-8618-1bdbd2046096 2011-03-28 16:33:17.871 BST 19dbb793-e604-4c3c-82a6-e2fe1be4d084 2011-03-29 11:06:03.489 BST 3117ba0d-f09f-4956-ad74-7761dbf998d9 2011-03-28 19:18:13.311 BST 33afbd5c-d9a6-4e58-a255-ac744742875a 2011-03-28 18:38:03.893 BST 21781546-1ad8-4dea-81d0-6780a7ec9e66 2011-03-30 16:35:51.793 BST ef9de97c-ca76-479e-b933-d396f043e138 2011-03-28 16:39:02.585 BST e276142b-824b-4fca-94b4-5a7402085b73 2011-03-30 10:59:54.93 BST b4078147-9bbb-45c3-a045-dc6090bf95bb 2011-03-30 11:01:16.668 BST a129e83f-4d68-4d84-bb21-b7b2c29cdab9 2011-03-30 12:01:49.842 BST 473b328e-5f9a-4db9-b31a-c868afc8da4c 2011-03-30 10:55:52.642 BST ff900e9f-7b8d-43fc-be47-cc638b4266d4 2011-03-28 19:00:51.178 BST EBI_OLS_TermInfoOntology_Id00 text/plain 2011-03-30 10:54:12.634 BST Ontology term identifier to retrive information about. For example: GO:0008150. 2011-03-30 10:54:12.634 BST Ontology_term text/plain 2011-03-30 10:54:12.634 BST text/xml 2011-03-30 10:54:12.634 BST getTermMetadataparameters0attachmentList11parameters00net.sf.taverna.t2.activitieswsdl-activity1.2net.sf.taverna.t2.activities.wsdl.WSDLActivity http://www.ebi.ac.uk/ontology-lookup/OntologyQuery.wsdl getTermMetadata net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 0 0 0 net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeInput_parameterstermId0ontologyName0output00net.sf.taverna.t2.activitieswsdl-activity1.2net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLInputSplitterActivity <s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="getTermMetadata" name="parameters" qname="{http://www.ebi.ac.uk/ontology-lookup/OntologyQuery}getTermMetadata"><s:elements><s:basetype optional="false" unbounded="false" typename="string" name="termId" qname="{http://www.ebi.ac.uk/ontology-lookup/OntologyQuery}&gt;getTermMetadata&gt;termId" /><s:basetype optional="false" unbounded="false" typename="string" name="ontologyName" qname="{http://www.ebi.ac.uk/ontology-lookup/OntologyQuery}&gt;getTermMetadata&gt;ontologyName" /></s:elements></s:complextype></s:extensions> java.lang.String true termId 0 'text/plain' java.lang.String true ontologyName 0 'text/plain' 0 output 0 'text/xml' net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 0 0 0 net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeUnwrap_resultinput0getTermMetadataReturn00net.sf.taverna.t2.activitieswsdl-activity1.2net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLOutputSplitterActivity <s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="getTermMetadataResponse" name="parameters" qname="{http://www.ebi.ac.uk/ontology-lookup/OntologyQuery}getTermMetadataResponse"><s:elements><s:arraytype optional="false" unbounded="false" wrapped="false" typename="Map" name="getTermMetadataReturn" qname="{http://www.ebi.ac.uk/ontology-lookup/OntologyQuery}&gt;getTermMetadataResponse&gt;getTermMetadataReturn"><s:elementtype><s:complextype optional="false" unbounded="false" typename="mapItem" name="" qname="{http://xml.apache.org/xml-soap}mapItem"><s:elements><s:basetype optional="false" unbounded="false" typename="anyType" name="key" qname="{http://xml.apache.org/xml-soap}mapItem&gt;key" /><s:basetype optional="false" unbounded="false" typename="anyType" name="value" qname="{http://xml.apache.org/xml-soap}mapItem&gt;value" /></s:elements></s:complextype></s:elementtype></s:arraytype></s:elements></s:complextype></s:extensions> java.lang.String true input 0 'text/xml' 0 getTermMetadataReturn 0 'text/xml' net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 0 0 0 net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeGOvalue00net.sf.taverna.t2.activitiesstringconstant-activity1.2net.sf.taverna.t2.activities.stringconstant.StringConstantActivity GO net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokegetTermMetadataparametersInput_parametersoutputInput_parameterstermIdOntology_IdInput_parametersontologyNameGOvalueUnwrap_resultinputgetTermMetadataparametersOntology_termUnwrap_resultgetTermMetadataReturn Hamish McWilliam 2011-03-30 10:54:12.659 BST EBI_OLS_TermInfo 2011-03-30 10:54:12.659 BST 95e54190-f04b-4903-b7b1-11f40bb672de 2011-03-30 11:01:12.1 BST 5991ef38-c361-422d-82ab-5c100a76112c 2011-03-30 10:55:35.943 BST 4eaf1d8b-b3dc-478f-8337-bc4213714abb 2011-03-30 10:54:12.741 BST 672f9ccb-befa-40ea-ad98-ed1905681a36 2011-03-30 10:59:32.867 BST Get details of an ontology term given its identifer. This workflow uses the EBI's Ontology Lookup Service (OLS) to get the details of the ontology term. The OLS suports a wide range of biological and bioinformatic ontologies. See http://www.ebi.ac.uk/ontology-lookup/ for more information. 2011-03-30 10:54:12.659 BST