PubMed_Search_XPathsearch_term00 2011-03-23 11:53:17.747 CET text/plain 2011-03-23 11:53:17.746 CET pubmed_result text/plain 2011-03-23 11:53:17.748 CET XPath_Service_nodelistpubmed_databasevalue00net.sf.taverna.t2.activitiesstringconstant-activity1.2net.sf.taverna.t2.activities.stringconstant.StringConstantActivity pubmed net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 0 0 0 net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokerun_eSearchparameters0attachmentList11parameters00net.sf.taverna.t2.activitieswsdl-activity1.2net.sf.taverna.t2.activities.wsdl.WSDLActivity http://eutils.ncbi.nlm.nih.gov/entrez/eutils/soap/eutils.wsdl run_eSearch net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 0 0 0 net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeparametersXMLterm0db0output00net.sf.taverna.t2.activitieswsdl-activity1.2net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLInputSplitterActivity <s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="eSearchRequest" name="parameters" qname="{http://www.ncbi.nlm.nih.gov/soap/eutils/esearch}eSearchRequest"><s:elements><s:basetype optional="true" unbounded="false" typename="string" name="db" qname="{http://www.w3.org/2001/XMLSchema}string" /><s:basetype optional="true" unbounded="false" typename="string" name="term" qname="{http://www.w3.org/2001/XMLSchema}string" /><s:basetype optional="true" unbounded="false" typename="string" name="WebEnv" qname="{http://www.w3.org/2001/XMLSchema}string" /><s:basetype optional="true" unbounded="false" typename="string" name="QueryKey" qname="{http://www.w3.org/2001/XMLSchema}string" /><s:basetype optional="true" unbounded="false" typename="string" name="usehistory" qname="{http://www.w3.org/2001/XMLSchema}string" /><s:basetype optional="true" unbounded="false" typename="string" name="tool" qname="{http://www.w3.org/2001/XMLSchema}string" /><s:basetype optional="true" unbounded="false" typename="string" name="email" qname="{http://www.w3.org/2001/XMLSchema}string" /><s:basetype optional="true" unbounded="false" typename="string" name="field" qname="{http://www.w3.org/2001/XMLSchema}string" /><s:basetype optional="true" unbounded="false" typename="string" name="reldate" qname="{http://www.w3.org/2001/XMLSchema}string" /><s:basetype optional="true" unbounded="false" typename="string" name="mindate" qname="{http://www.w3.org/2001/XMLSchema}string" /><s:basetype optional="true" unbounded="false" typename="string" name="maxdate" qname="{http://www.w3.org/2001/XMLSchema}string" /><s:basetype optional="true" unbounded="false" typename="string" name="datetype" qname="{http://www.w3.org/2001/XMLSchema}string" /><s:basetype optional="true" unbounded="false" typename="string" name="RetStart" qname="{http://www.w3.org/2001/XMLSchema}string" /><s:basetype optional="true" unbounded="false" typename="string" name="RetMax" qname="{http://www.w3.org/2001/XMLSchema}string" /><s:basetype optional="true" unbounded="false" typename="string" name="rettype" qname="{http://www.w3.org/2001/XMLSchema}string" /><s:basetype optional="true" unbounded="false" typename="string" name="sort" qname="{http://www.w3.org/2001/XMLSchema}string" /></s:elements></s:complextype></s:extensions> java.lang.String true db 0 'text/plain' java.lang.String true term 0 'text/plain' java.lang.String true WebEnv 0 'text/plain' java.lang.String true QueryKey 0 'text/plain' java.lang.String true usehistory 0 'text/plain' java.lang.String true tool 0 'text/plain' java.lang.String true email 0 'text/plain' java.lang.String true field 0 'text/plain' java.lang.String true reldate 0 'text/plain' java.lang.String true mindate 0 'text/plain' java.lang.String true maxdate 0 'text/plain' java.lang.String true datetype 0 'text/plain' java.lang.String true RetStart 0 'text/plain' java.lang.String true RetMax 0 'text/plain' java.lang.String true rettype 0 'text/plain' java.lang.String true sort 0 'text/plain' 0 output 0 'text/xml' net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 0 0 0 net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeXPath_Servicexml_text0nodelist11net.sf.taverna.t2.ui-activitiesxpath-activity0.3net.sf.taverna.t2.activities.xpath.XPathActivity <?xml version="1.0" encoding="UTF-8"?> <eSearchResult xmlns="http://www.ncbi.nlm.nih.gov/soap/eutils/esearch"><Count>98827</Count><RetMax>20</RetMax><RetStart>0</RetStart><IdList> <Id>21445833</Id> <Id>21445774</Id> <Id>21444231</Id> <Id>21444034</Id> <Id>21443634</Id> <Id>21441889</Id> <Id>21441645</Id> <Id>21438647</Id> <Id>21438394</Id> <Id>21437840</Id> <Id>21437517</Id> <Id>21437353</Id> <Id>21437192</Id> <Id>21433272</Id> <Id>21430775</Id> <Id>21429455</Id> <Id>21427564</Id> <Id>21427521</Id> <Id>21427234</Id> <Id>21426764</Id> </IdList><TranslationSet><Translation> <From>Blood clotting</From> <To>"blood coagulation"[MeSH Terms] OR ("blood"[All Fields] AND "coagulation"[All Fields]) OR "blood coagulation"[All Fields] OR ("blood"[All Fields] AND "clotting"[All Fields]) OR "blood clotting"[All Fields]</To> </Translation></TranslationSet><TranslationStack> <TermSet> <Term>"blood coagulation"[MeSH Terms]</Term> <Field>MeSH Terms</Field> <Count>46011</Count> <Explode>Y</Explode> </TermSet> <TermSet> <Term>"blood"[All Fields]</Term> <Field>All Fields</Field> <Count>2708525</Count> <Explode>Y</Explode> </TermSet> <TermSet> <Term>"coagulation"[All Fields]</Term> <Field>All Fields</Field> <Count>115246</Count> <Explode>Y</Explode> </TermSet> <OP>AND</OP> <OP>GROUP</OP> <OP>OR</OP> <TermSet> <Term>"blood coagulation"[All Fields]</Term> <Field>All Fields</Field> <Count>67202</Count> <Explode>Y</Explode> </TermSet> <OP>OR</OP> <TermSet> <Term>"blood"[All Fields]</Term> <Field>All Fields</Field> <Count>2708525</Count> <Explode>Y</Explode> </TermSet> <TermSet> <Term>"clotting"[All Fields]</Term> <Field>All Fields</Field> <Count>16396</Count> <Explode>Y</Explode> </TermSet> <OP>AND</OP> <OP>GROUP</OP> <OP>OR</OP> <TermSet> <Term>"blood clotting"[All Fields]</Term> <Field>All Fields</Field> <Count>2910</Count> <Explode>Y</Explode> </TermSet> <OP>OR</OP> <OP>GROUP</OP> </TranslationStack><QueryTranslation>"blood coagulation"[MeSH Terms] OR ("blood"[All Fields] AND "coagulation"[All Fields]) OR "blood coagulation"[All Fields] OR ("blood"[All Fields] AND "clotting"[All Fields]) OR "blood clotting"[All Fields]</QueryTranslation></eSearchResult> /default:eSearchResult/default:IdList default http://www.ncbi.nlm.nih.gov/soap/eutils/esearch net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokerun_eSearchparametersparametersXMLoutputparametersXMLtermsearch_termparametersXMLdbpubmed_databasevalueXPath_Servicexml_textrun_eSearchparameterspubmed_resultrun_eSearchparametersXPath_Service_nodelistXPath_Servicenodelist This workflow takes in a number of search terms (as used in the normal PubMed interface) and retrieves a list of PubMed ids in a list format. 2011-03-23 11:53:39.693 CET This workflow takes in a search term (as used in the normal PubMed interface) and retrieves a list of PubMed ids in a list format. 2011-03-23 12:01:57.516 CET XPath Pubmed Ids 2011-03-23 11:53:39.693 CET Paul Fisher 2011-03-23 11:53:39.693 CET This workflow takes in a search term (as used in the normal PubMed interface) and retrieves a list of PubMed ids in xml. The xml is then parsed to retrieve a list of PubMed ids 2011-03-23 16:56:21.622 CET PubMed Search 2011-03-23 12:01:49.517 CET f7a0f1c0-c2b9-4085-92f6-3528e363997d 2011-03-23 16:56:32.578 CET 82600d6a-702c-47d5-8550-c50e042266f3 2011-03-30 10:26:29.488 CEST 4b15a2c1-e64b-426e-b544-64536fa11946 2011-03-23 12:02:33.82 CET dc1392b6-185d-4d7c-abf7-949563131ba3 2011-03-23 16:55:25.673 CET PubMed Search XPath 2011-03-23 16:55:56.124 CET d94e6909-536f-450a-a45f-877da6d5640e 2011-03-30 10:24:40.210 CEST This workflow takes in a search term (as used in the normal PubMed interface) and retrieves a list of PubMed ids in xml 2011-03-23 12:02:03.779 CET