Biomart and 2x BLAST

Created: 2010-12-13 17:11:54 Last updated: 2010-12-13 17:11:55

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Perform Roden and Invertebrates BLAST sequence alignments (using DDBJ Blast) on the gene sequences for a (semi-random) selection of genes from Human sapiens chromosome 22. (Using Biomart).

blast_ddbj_invertebrates and blast_ddbj_rodents should execute in parallel as they don't depend on each other.

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Authors (1)

Titles (5)

Descriptions (3)

Dependencies (0)

Inputs (0)

Processors (6)

Name	Type	Description
hsapiens_gene_ensembl	biomart
blast_ddbj_rodents	wsdl	Wsdl http://xml.nig.ac.jp/wsdl/Blast.wsdl Wsdl Operation searchSimple
program_value	stringconstant	Value blastn
ddbjrod	stringconstant	Value ddbjrod
blast_ddbj_invertebrates	wsdl	Wsdl http://xml.nig.ac.jp/wsdl/Blast.wsdl Wsdl Operation searchSimple
ddbjinv	stringconstant	Value ddbjinv

Beanshells (0)

Outputs (3)

Name	Description
gene_id
transcript_exon_intron
blast_rodents

Datalinks (9)

Source	Sink
hsapiens_gene_ensembl:hsapiens_gene_ensembl.transcript_exon_intron	blast_ddbj_rodents:query
program_value:value	blast_ddbj_rodents:program
ddbjrod:value	blast_ddbj_rodents:database
program_value:value	blast_ddbj_invertebrates:program
hsapiens_gene_ensembl:hsapiens_gene_ensembl.transcript_exon_intron	blast_ddbj_invertebrates:query
ddbjinv:value	blast_ddbj_invertebrates:database
hsapiens_gene_ensembl:hsapiens_gene_ensembl.ensembl_gene_id	gene_id
hsapiens_gene_ensembl:hsapiens_gene_ensembl.transcript_exon_intron	transcript_exon_intron
blast_ddbj_rodents:Result	blast_rodents

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Information Workflow Type

Taverna 2

Information Uploader

Stian Soiland-Reyes

Information License

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Information Version 1 (of 1)

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1354 viewings

1392 downloads

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Biomart and 2x BLAST

Created by Stian Soiland-Reyes on Monday 13 December 2010 17:11:54 (UTC)

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Biomart and 2x BLAST

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Wsdl

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