Designed to show the use of EMBOSS based Soaplab services from Taverna, this workflow has no inputs as all initial values are specified as string constants. A sequence set is fetched using the seqret tool, then simultaneously scanned for predicted transmembrane regions and subjected to a multiple alignment using emma. This alignment is then plotted to a set of PNG images and also used to build a profile using the prophecy and prophet tools.
swallid:ops2_*
G
Ops2 Sequences
1171
110
msf
embl:xlrhodop
Gapped alignment for profiles
http://www.ebi.ac.uk/soaplab/emboss4/services/nucleic_profiles::prophet
Creates matrices/profiles from multiple alignments
http://www.ebi.ac.uk/soaplab/emboss4/services/nucleic_profiles::prophecy
Displays membrane spanning regions
http://www.ebi.ac.uk/soaplab/emboss4/services/protein_2d_structure::tmap
Reads and writes (returns) sequences
http://www.ebi.ac.uk/soaplab/emboss4/services/edit::seqret
Translate nucleic acid sequences
http://www.ebi.ac.uk/soaplab/emboss4/services/nucleic_translation::transeq
Reads and writes (returns) sequences
http://www.ebi.ac.uk/soaplab/emboss4/services/edit::seqret
Multiple alignment program - interface to ClustalW program
http://www.ebi.ac.uk/soaplab/emboss4/services/alignment_multiple::emma
Displays aligned sequences, with colouring and boxing
http://www.ebi.ac.uk/soaplab/emboss4/services/alignment_multiple::prettyplot
image/png
application/octet-stream
The array of png images returned from the plot processor
http://www.mygrid.org.uk/ontology#domain_concept
image/png
application/octet-stream