BioXSD_example_workflowquerySequence11 A query protein sequence in BioXSD format 2010-10-12 09:13:02.199 BST <xml-fragment xmlns:bx="http://bioxsd.org/BioXSD-0.4"><bx:sequence>MSSSGTPDLPVLLTDLKIQYTKIFINNEWHDSVSGKKFPVFNPATEEELCQVEEGDKEDVDKAVKAARQAFQIGSPWRTMDASERGRLLYKLADLIERDRLLLATMESMNGGKLYSNAYLNDLAGCIKTLRYCAGWADKIQGRTIPIDGNFFTYTRHEPIGVCGQIIPWNFPLVMLIWKIGPALSCGNTVVVKPAEQTPLTALHVASLIKEAGFPPGVVNIVPGYGPTAGAAISSHMDIDKVAFTGSTEVGKLIKEAAGKSNLKRVTLELGGKSPCIVLADADLDNAVEFAHHGVFYHQGQCCIAASRIFVEESIYDEFVRRSVERAKKYILGNPLTPGVTQGPQIDKEQYDKILDLIESGKKEGAKLECGGGPWGNKGYFVQPTVFSNVTDEMRIAKEEIFGPVQQIMKFKSLDDVIKRANNTFYGLSAGVFTKDIDKAITISSALQAGTVW</bx:sequence><bx:formalReference><bx:accession>XP_001143065</bx:accession></bx:formalReference></xml-fragment> 2010-10-06 09:38:23.446 BST <xml-fragment xmlns:bx=\"http://bioxsd.org/BioXSD-0.4\"><bx:sequence>MSSSGTPDLPVLLTDLKIQYTKIFINNEWHDSVSGKKFPVFNPATEEELCQVEEGDKEDVDKAVKAARQAFQIGSPWRTMDASERGRLLYKLADLIERDRLLLATMESMNGGKLYSNAYLNDLAGCIKTLRYCAGWADKIQGRTIPIDGNFFTYTRHEPIGVCGQIIPWNFPLVMLIWKIGPALSCGNTVVVKPAEQTPLTALHVASLIKEAGFPPGVVNIVPGYGPTAGAAISSHMDIDKVAFTGSTEVGKLIKEAAGKSNLKRVTLELGGKSPCIVLADADLDNAVEFAHHGVFYHQGQCCIAASRIFVEESIYDEFVRRSVERAKKYILGNPLTPGVTQGPQIDKEQYDKILDLIESGKKEGAKLECGGGPWGNKGYFVQPTVFSNVTDEMRIAKEEIFGPVQQIMKFKSLDDVIKRANNTFYGLSAGVFTKDIDKAITISSALQAGTVW</bx:sequence><bx:formalReference><bx:accession>XP_001143065</bx:accession></bx:formalReference></xml-fragment> 2010-10-06 09:35:53.425 BST GetResult_output_BlastOutputGetResult_output_DbStatusgetStatus_statusgetAccessionIds_nodelistgetStatusjobId0status00net.sf.taverna.t2.activitiesdataflow-activity1.2net.sf.taverna.t2.activities.dataflow.DataflowActivitynet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Loop <activity xmlns="http://taverna.sf.net/2008/xml/t2flow"><raven><group>net.sf.taverna.t2.activities</group><artifact>beanshell-activity</artifact><version>1.2</version></raven><class>net.sf.taverna.t2.activities.beanshell.BeanshellActivity</class><inputMap /><outputMap /><configBean encoding="xstream"><net.sf.taverna.t2.activities.beanshell.BeanshellActivityConfigurationBean xmlns=""> <script>loop = "" + ! status.equals("COMPLETE"); if ("true".matches(loop)) { Thread.sleep(15000); }</script> <dependencies /> <classLoaderSharing>workflow</classLoaderSharing> <localDependencies /> <artifactDependencies /> <inputs> <net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> <translatedElementType>java.lang.String</translatedElementType> <allowsLiteralValues>true</allowsLiteralValues> <name>status</name> <depth>0</depth> </net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> </inputs> <outputs> <net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityOutputPortDefinitionBean> <granularDepth>0</granularDepth> <name>loop</name> <depth>0</depth> </net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityOutputPortDefinitionBean> </outputs> </net.sf.taverna.t2.activities.beanshell.BeanshellActivityConfigurationBean></configBean><annotations /></activity> true net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokegetResultjobId0dbStatus00blastOutput00net.sf.taverna.t2.activitiesdataflow-activity1.2net.sf.taverna.t2.activities.dataflow.DataflowActivitynet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokerunBlastpquerySequence1alignmentNumber0databaseURI0expectValue0gapOpenPenalty0matrix0wordsize0gapExtensionPenalty0jobId00net.sf.taverna.t2.activitiesdataflow-activity1.2net.sf.taverna.t2.activities.dataflow.DataflowActivitynet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokealignmentNumbervalue00net.sf.taverna.t2.activitiesstringconstant-activity1.2net.sf.taverna.t2.activities.stringconstant.StringConstantActivity 5 net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokedatabaseURIvalue00net.sf.taverna.t2.activitiesstringconstant-activity1.2net.sf.taverna.t2.activities.stringconstant.StringConstantActivity Swiss-Prot net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeexpectValuevalue00net.sf.taverna.t2.activitiesstringconstant-activity1.2net.sf.taverna.t2.activities.stringconstant.StringConstantActivity 10 net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokegapOpenPenaltyvalue00net.sf.taverna.t2.activitiesstringconstant-activity1.2net.sf.taverna.t2.activities.stringconstant.StringConstantActivity -1 net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokematrix_valuevalue00net.sf.taverna.t2.activitiesstringconstant-activity1.2net.sf.taverna.t2.activities.stringconstant.StringConstantActivity BLOSUM62 net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokewordsizevalue00net.sf.taverna.t2.activitiesstringconstant-activity1.2net.sf.taverna.t2.activities.stringconstant.StringConstantActivity 0 net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokegapExtensionPenaltyvalue00net.sf.taverna.t2.activitiesstringconstant-activity1.2net.sf.taverna.t2.activities.stringconstant.StringConstantActivity -1 net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokegetAccessionIdsxml_text0nodelist11net.sf.taverna.t2.ui-activitiesxpath-activity0.3net.sf.taverna.t2.activities.xpath.XPathActivity <?xml version="1.0" encoding="UTF-8"?> <BlastOutput xmlns:ns2="http://www.bccs.uni.no/schema/BlastOutput"> <ns2:BlastOutput_program xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:type="ns2:BlastOutput_program">blastp</ns2:BlastOutput_program> <ns2:BlastOutput_version xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:type="ns2:BlastOutput_version">blastp 2.2.20 [Feb-08-2009]</ns2:BlastOutput_version> <ns2:BlastOutput_reference xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:type="ns2:BlastOutput_reference">~Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, ~Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), ~"Gapped BLAST and PSI-BLAST: a new generation of protein database search~programs", Nucleic Acids Res. 25:3389-3402. </ns2:BlastOutput_reference> <ns2:BlastOutput_db xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:type="ns2:BlastOutput_db">/home/esysbio/pyws/files/blastws/databases/Swiss-Prot </ns2:BlastOutput_db> <ns2:BlastOutput_query-ID xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:type="ns2:BlastOutput_query-ID">lcl|1_0</ns2:BlastOutput_query-ID> <ns2:BlastOutput_query-def xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:type="ns2:BlastOutput_query-def">None</ns2:BlastOutput_query-def> <ns2:BlastOutput_query-len xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:type="ns2:BlastOutput_query-len">453</ns2:BlastOutput_query-len> <ns2:BlastOutput_param xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:type="ns2:BlastOutput_paramType"> <ns2:Parameters xsi:type="ns2:ParametersType"> <ns2:Parameters_matrix xsi:type="ns2:Parameters_matrix">BLOSUM62 </ns2:Parameters_matrix> <ns2:Parameters_expect xsi:type="ns2:Parameters_expect">10 </ns2:Parameters_expect> <ns2:Parameters_gap-open xsi:type="ns2:Parameters_gap-open">11 </ns2:Parameters_gap-open> <ns2:Parameters_gap-extend xsi:type="ns2:Parameters_gap-extend">1 </ns2:Parameters_gap-extend> <ns2:Parameters_filter xsi:type="ns2:Parameters_filter">F </ns2:Parameters_filter> </ns2:Parameters> </ns2:BlastOutput_param> <ns2:BlastOutput_iterations xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:type="ns2:BlastOutput_iterationsType"> <ns2:Iteration xsi:type="ns2:IterationType"> <ns2:Iteration_iter-num xsi:type="ns2:Iteration_iter-num">1 </ns2:Iteration_iter-num> <ns2:Iteration_query-ID xsi:type="ns2:Iteration_query-ID">lcl|1_0 </ns2:Iteration_query-ID> <ns2:Iteration_query-def xsi:type="ns2:Iteration_query-def">None </ns2:Iteration_query-def> <ns2:Iteration_query-len xsi:type="ns2:Iteration_query-len">453 </ns2:Iteration_query-len> <ns2:Iteration_hits xsi:type="ns2:Iteration_hitsType"> <ns2:Hit xsi:type="ns2:HitType"> <ns2:Hit_num xsi:type="ns2:Hit_num">1</ns2:Hit_num> <ns2:Hit_id xsi:type="ns2:Hit_id">sp|P00352|AL1A1_HUMAN</ns2:Hit_id> <ns2:Hit_def xsi:type="ns2:Hit_def">Retinal dehydrogenase 1 OS=Homo sapiens GN=ALDH1A1 PE=1 SV=2</ns2:Hit_def> <ns2:Hit_accession xsi:type="ns2:Hit_accession">P00352 </ns2:Hit_accession> <ns2:Hit_len xsi:type="ns2:Hit_len">501</ns2:Hit_len> <ns2:Hit_hsps xsi:type="ns2:Hit_hspsType"> <ns2:Hsp xsi:type="ns2:HspType"> <ns2:Hsp_num xsi:type="ns2:Hsp_num">1</ns2:Hsp_num> <ns2:Hsp_bit-score xsi:type="ns2:Hsp_bit-score">938.332 </ns2:Hsp_bit-score> <ns2:Hsp_score xsi:type="ns2:Hsp_score">2424</ns2:Hsp_score> <ns2:Hsp_evalue xsi:type="ns2:Hsp_evalue">0</ns2:Hsp_evalue> <ns2:Hsp_query-from xsi:type="ns2:Hsp_query-from">1 </ns2:Hsp_query-from> <ns2:Hsp_query-to xsi:type="ns2:Hsp_query-to">453 </ns2:Hsp_query-to> <ns2:Hsp_hit-from xsi:type="ns2:Hsp_hit-from">1</ns2:Hsp_hit-from> <ns2:Hsp_hit-to xsi:type="ns2:Hsp_hit-to">453</ns2:Hsp_hit-to> <ns2:Hsp_query-frame xsi:type="ns2:Hsp_query-frame">1 </ns2:Hsp_query-frame> <ns2:Hsp_hit-frame xsi:type="ns2:Hsp_hit-frame">1 </ns2:Hsp_hit-frame> <ns2:Hsp_identity xsi:type="ns2:Hsp_identity">453 </ns2:Hsp_identity> <ns2:Hsp_positive xsi:type="ns2:Hsp_positive">453 </ns2:Hsp_positive> <ns2:Hsp_align-len xsi:type="ns2:Hsp_align-len">453 </ns2:Hsp_align-len> <ns2:Hsp_qseq xsi:type="ns2:Hsp_qseq">MSSSGTPDLPVLLTDLKIQYTKIFINNEWHDSVSGKKFPVFNPATEEELCQVEEGDKEDVDKAVKAARQAFQIGSPWRTMDASERGRLLYKLADLIERDRLLLATMESMNGGKLYSNAYLNDLAGCIKTLRYCAGWADKIQGRTIPIDGNFFTYTRHEPIGVCGQIIPWNFPLVMLIWKIGPALSCGNTVVVKPAEQTPLTALHVASLIKEAGFPPGVVNIVPGYGPTAGAAISSHMDIDKVAFTGSTEVGKLIKEAAGKSNLKRVTLELGGKSPCIVLADADLDNAVEFAHHGVFYHQGQCCIAASRIFVEESIYDEFVRRSVERAKKYILGNPLTPGVTQGPQIDKEQYDKILDLIESGKKEGAKLECGGGPWGNKGYFVQPTVFSNVTDEMRIAKEEIFGPVQQIMKFKSLDDVIKRANNTFYGLSAGVFTKDIDKAITISSALQAGTVW </ns2:Hsp_qseq> <ns2:Hsp_hseq xsi:type="ns2:Hsp_hseq">MSSSGTPDLPVLLTDLKIQYTKIFINNEWHDSVSGKKFPVFNPATEEELCQVEEGDKEDVDKAVKAARQAFQIGSPWRTMDASERGRLLYKLADLIERDRLLLATMESMNGGKLYSNAYLNDLAGCIKTLRYCAGWADKIQGRTIPIDGNFFTYTRHEPIGVCGQIIPWNFPLVMLIWKIGPALSCGNTVVVKPAEQTPLTALHVASLIKEAGFPPGVVNIVPGYGPTAGAAISSHMDIDKVAFTGSTEVGKLIKEAAGKSNLKRVTLELGGKSPCIVLADADLDNAVEFAHHGVFYHQGQCCIAASRIFVEESIYDEFVRRSVERAKKYILGNPLTPGVTQGPQIDKEQYDKILDLIESGKKEGAKLECGGGPWGNKGYFVQPTVFSNVTDEMRIAKEEIFGPVQQIMKFKSLDDVIKRANNTFYGLSAGVFTKDIDKAITISSALQAGTVW </ns2:Hsp_hseq> <ns2:Hsp_midline xsi:type="ns2:Hsp_midline">MSSSGTPDLPVLLTDLKIQYTKIFINNEWHDSVSGKKFPVFNPATEEELCQVEEGDKEDVDKAVKAARQAFQIGSPWRTMDASERGRLLYKLADLIERDRLLLATMESMNGGKLYSNAYLNDLAGCIKTLRYCAGWADKIQGRTIPIDGNFFTYTRHEPIGVCGQIIPWNFPLVMLIWKIGPALSCGNTVVVKPAEQTPLTALHVASLIKEAGFPPGVVNIVPGYGPTAGAAISSHMDIDKVAFTGSTEVGKLIKEAAGKSNLKRVTLELGGKSPCIVLADADLDNAVEFAHHGVFYHQGQCCIAASRIFVEESIYDEFVRRSVERAKKYILGNPLTPGVTQGPQIDKEQYDKILDLIESGKKEGAKLECGGGPWGNKGYFVQPTVFSNVTDEMRIAKEEIFGPVQQIMKFKSLDDVIKRANNTFYGLSAGVFTKDIDKAITISSALQAGTVW </ns2:Hsp_midline> </ns2:Hsp> </ns2:Hit_hsps> </ns2:Hit> <ns2:Hit xsi:type="ns2:HitType"> <ns2:Hit_num xsi:type="ns2:Hit_num">2</ns2:Hit_num> <ns2:Hit_id xsi:type="ns2:Hit_id">sp|Q8HYE4|AL1A1_MACFA</ns2:Hit_id> <ns2:Hit_def xsi:type="ns2:Hit_def">Retinal dehydrogenase 1 OS=Macaca fascicularis GN=ALDH1A1 PE=2 SV=3</ns2:Hit_def> <ns2:Hit_accession xsi:type="ns2:Hit_accession">Q8HYE4 </ns2:Hit_accession> <ns2:Hit_len xsi:type="ns2:Hit_len">501</ns2:Hit_len> <ns2:Hit_hsps xsi:type="ns2:Hit_hspsType"> <ns2:Hsp xsi:type="ns2:HspType"> <ns2:Hsp_num xsi:type="ns2:Hsp_num">1</ns2:Hsp_num> <ns2:Hsp_bit-score xsi:type="ns2:Hsp_bit-score">927.161 </ns2:Hsp_bit-score> <ns2:Hsp_score xsi:type="ns2:Hsp_score">2395</ns2:Hsp_score> <ns2:Hsp_evalue xsi:type="ns2:Hsp_evalue">0</ns2:Hsp_evalue> <ns2:Hsp_query-from xsi:type="ns2:Hsp_query-from">1 </ns2:Hsp_query-from> <ns2:Hsp_query-to xsi:type="ns2:Hsp_query-to">453 </ns2:Hsp_query-to> <ns2:Hsp_hit-from xsi:type="ns2:Hsp_hit-from">1</ns2:Hsp_hit-from> <ns2:Hsp_hit-to xsi:type="ns2:Hsp_hit-to">453</ns2:Hsp_hit-to> <ns2:Hsp_query-frame xsi:type="ns2:Hsp_query-frame">1 </ns2:Hsp_query-frame> <ns2:Hsp_hit-frame xsi:type="ns2:Hsp_hit-frame">1 </ns2:Hsp_hit-frame> <ns2:Hsp_identity xsi:type="ns2:Hsp_identity">447 </ns2:Hsp_identity> <ns2:Hsp_positive xsi:type="ns2:Hsp_positive">448 </ns2:Hsp_positive> <ns2:Hsp_align-len xsi:type="ns2:Hsp_align-len">453 </ns2:Hsp_align-len> <ns2:Hsp_qseq xsi:type="ns2:Hsp_qseq">MSSSGTPDLPVLLTDLKIQYTKIFINNEWHDSVSGKKFPVFNPATEEELCQVEEGDKEDVDKAVKAARQAFQIGSPWRTMDASERGRLLYKLADLIERDRLLLATMESMNGGKLYSNAYLNDLAGCIKTLRYCAGWADKIQGRTIPIDGNFFTYTRHEPIGVCGQIIPWNFPLVMLIWKIGPALSCGNTVVVKPAEQTPLTALHVASLIKEAGFPPGVVNIVPGYGPTAGAAISSHMDIDKVAFTGSTEVGKLIKEAAGKSNLKRVTLELGGKSPCIVLADADLDNAVEFAHHGVFYHQGQCCIAASRIFVEESIYDEFVRRSVERAKKYILGNPLTPGVTQGPQIDKEQYDKILDLIESGKKEGAKLECGGGPWGNKGYFVQPTVFSNVTDEMRIAKEEIFGPVQQIMKFKSLDDVIKRANNTFYGLSAGVFTKDIDKAITISSALQAGTVW </ns2:Hsp_qseq> <ns2:Hsp_hseq xsi:type="ns2:Hsp_hseq">MSSSGTSDLPVLPTDLKIQYTKIFINNEWHDSVSGKKFPVFNPATEEELCQVEEGDKADVDKAVKAARQAFQIGSPWRTMDASERGRLLYKLADLIERDRLLLATMESMNGGKLYSNAYLNDLAGCIKTLRYCAGWADKIQGRTIPIDGNFFTYTRHEPIGVCGQIIPWNFPLVMLIWKIGPALSCGNTVVVKPAEQTPLTALHVASLIKEAGFPPGVVNIVPGYGPTAGAAISSHMDIDKVAFTGSTEVGKLIKEAAGKSNLKRVTLELGGKSPCIVLADADLDNAVEFAHHGVFYHQGQCCIAASRIFVEESIYDEFVRRSVERAKKYILGNPLTPGATQGPQIDKEQYDKILDLIESGKKEGAKLECGGGPWGNKGYFVQPTVFSNVTDEMRIAKEEIFGPVQQIMKFKSLDDVIKRANNTFYGLSAGVFTNDIDKAVTISSALQAGTVW </ns2:Hsp_hseq> <ns2:Hsp_midline xsi:type="ns2:Hsp_midline">MSSSGT DLPVL TDLKIQYTKIFINNEWHDSVSGKKFPVFNPATEEELCQVEEGDK DVDKAVKAARQAFQIGSPWRTMDASERGRLLYKLADLIERDRLLLATMESMNGGKLYSNAYLNDLAGCIKTLRYCAGWADKIQGRTIPIDGNFFTYTRHEPIGVCGQIIPWNFPLVMLIWKIGPALSCGNTVVVKPAEQTPLTALHVASLIKEAGFPPGVVNIVPGYGPTAGAAISSHMDIDKVAFTGSTEVGKLIKEAAGKSNLKRVTLELGGKSPCIVLADADLDNAVEFAHHGVFYHQGQCCIAASRIFVEESIYDEFVRRSVERAKKYILGNPLTPG TQGPQIDKEQYDKILDLIESGKKEGAKLECGGGPWGNKGYFVQPTVFSNVTDEMRIAKEEIFGPVQQIMKFKSLDDVIKRANNTFYGLSAGVFT DIDKA+TISSALQAGTVW</ns2:Hsp_midline> </ns2:Hsp> </ns2:Hit_hsps> </ns2:Hit> <ns2:Hit xsi:type="ns2:HitType"> <ns2:Hit_num xsi:type="ns2:Hit_num">3</ns2:Hit_num> <ns2:Hit_id xsi:type="ns2:Hit_id">sp|P51977|AL1A1_SHEEP</ns2:Hit_id> <ns2:Hit_def xsi:type="ns2:Hit_def">Retinal dehydrogenase 1 OS=Ovis aries GN=ALDH1A1 PE=1 SV=2</ns2:Hit_def> <ns2:Hit_accession xsi:type="ns2:Hit_accession">P51977 </ns2:Hit_accession> <ns2:Hit_len xsi:type="ns2:Hit_len">501</ns2:Hit_len> <ns2:Hit_hsps xsi:type="ns2:Hit_hspsType"> <ns2:Hsp xsi:type="ns2:HspType"> <ns2:Hsp_num xsi:type="ns2:Hsp_num">1</ns2:Hsp_num> <ns2:Hsp_bit-score xsi:type="ns2:Hsp_bit-score">877.47 </ns2:Hsp_bit-score> <ns2:Hsp_score xsi:type="ns2:Hsp_score">2266</ns2:Hsp_score> <ns2:Hsp_evalue xsi:type="ns2:Hsp_evalue">0</ns2:Hsp_evalue> <ns2:Hsp_query-from xsi:type="ns2:Hsp_query-from">1 </ns2:Hsp_query-from> <ns2:Hsp_query-to xsi:type="ns2:Hsp_query-to">453 </ns2:Hsp_query-to> <ns2:Hsp_hit-from xsi:type="ns2:Hsp_hit-from">1</ns2:Hsp_hit-from> <ns2:Hsp_hit-to xsi:type="ns2:Hsp_hit-to">453</ns2:Hsp_hit-to> <ns2:Hsp_query-frame xsi:type="ns2:Hsp_query-frame">1 </ns2:Hsp_query-frame> <ns2:Hsp_hit-frame xsi:type="ns2:Hsp_hit-frame">1 </ns2:Hsp_hit-frame> <ns2:Hsp_identity xsi:type="ns2:Hsp_identity">413 </ns2:Hsp_identity> <ns2:Hsp_positive xsi:type="ns2:Hsp_positive">438 </ns2:Hsp_positive> <ns2:Hsp_align-len xsi:type="ns2:Hsp_align-len">453 </ns2:Hsp_align-len> <ns2:Hsp_qseq xsi:type="ns2:Hsp_qseq">MSSSGTPDLPVLLTDLKIQYTKIFINNEWHDSVSGKKFPVFNPATEEELCQVEEGDKEDVDKAVKAARQAFQIGSPWRTMDASERGRLLYKLADLIERDRLLLATMESMNGGKLYSNAYLNDLAGCIKTLRYCAGWADKIQGRTIPIDGNFFTYTRHEPIGVCGQIIPWNFPLVMLIWKIGPALSCGNTVVVKPAEQTPLTALHVASLIKEAGFPPGVVNIVPGYGPTAGAAISSHMDIDKVAFTGSTEVGKLIKEAAGKSNLKRVTLELGGKSPCIVLADADLDNAVEFAHHGVFYHQGQCCIAASRIFVEESIYDEFVRRSVERAKKYILGNPLTPGVTQGPQIDKEQYDKILDLIESGKKEGAKLECGGGPWGNKGYFVQPTVFSNVTDEMRIAKEEIFGPVQQIMKFKSLDDVIKRANNTFYGLSAGVFTKDIDKAITISSALQAGTVW </ns2:Hsp_qseq> <ns2:Hsp_hseq xsi:type="ns2:Hsp_hseq">MSSSAMPDVPAPLTNLQFKYTKIFINNEWHSSVSGKKFPVFNPATEEKLCEVEEGDKEDVDKAVKAARQAFQIGSPWRTMDASERGRLLNKLADLIERDRLLLATMEAMNGGKLFSNAYLMDLGGCIKTLRYCAGWADKIQGRTIPMDGNFFTYTRSEPVGVCGQIIPWNFPLLMFLWKIGPALSCGNTVVVKPAEQTPLTALHMGSLIKEAGFPPGVVNIVPGYGPTAGAAISSHMDVDKVAFTGSTEVGKLIKEAAGKSNLKRVSLELGGKSPCIVFADADLDNAVEFAHQGVFYHQGQCCIAASRLFVEESIYDEFVRRSVERAKKYVLGNPLTPGVSQGPQIDKEQYEKILDLIESGKKEGAKLECGGGPWGNKGYFIQPTVFSDVTDDMRIAKEEIFGPVQQIMKFKSLDDVIKRANNTFYGLSAGIFTNDIDKAITVSSALQSGTVW </ns2:Hsp_hseq> <ns2:Hsp_midline xsi:type="ns2:Hsp_midline">MSSS PD+P LT+L+ +YTKIFINNEWH SVSGKKFPVFNPATEE+LC+VEEGDKEDVDKAVKAARQAFQIGSPWRTMDASERGRLL KLADLIERDRLLLATME+MNGGKL+SNAYL DL GCIKTLRYCAGWADKIQGRTIP+DGNFFTYTR EP+GVCGQIIPWNFPL+M +WKIGPALSCGNTVVVKPAEQTPLTALH+ SLIKEAGFPPGVVNIVPGYGPTAGAAISSHMD+DKVAFTGSTEVGKLIKEAAGKSNLKRV+LELGGKSPCIV ADADLDNAVEFAH GVFYHQGQCCIAASR+FVEESIYDEFVRRSVERAKKY+LGNPLTPGV+QGPQIDKEQY+KILDLIESGKKEGAKLECGGGPWGNKGYF+QPTVFS+VTD+MRIAKEEIFGPVQQIMKFKSLDDVIKRANNTFYGLSAG+FT DIDKAIT+SSALQ+GTVW</ns2:Hsp_midline> </ns2:Hsp> </ns2:Hit_hsps> </ns2:Hit> <ns2:Hit xsi:type="ns2:HitType"> <ns2:Hit_num xsi:type="ns2:Hit_num">4</ns2:Hit_num> <ns2:Hit_id xsi:type="ns2:Hit_id">sp|P48644|AL1A1_BOVIN</ns2:Hit_id> <ns2:Hit_def xsi:type="ns2:Hit_def">Retinal dehydrogenase 1 OS=Bos taurus GN=ALDH1A1 PE=2 SV=3</ns2:Hit_def> <ns2:Hit_accession xsi:type="ns2:Hit_accession">P48644 </ns2:Hit_accession> <ns2:Hit_len xsi:type="ns2:Hit_len">501</ns2:Hit_len> <ns2:Hit_hsps xsi:type="ns2:Hit_hspsType"> <ns2:Hsp xsi:type="ns2:HspType"> <ns2:Hsp_num xsi:type="ns2:Hsp_num">1</ns2:Hsp_num> <ns2:Hsp_bit-score xsi:type="ns2:Hsp_bit-score">875.159 </ns2:Hsp_bit-score> <ns2:Hsp_score xsi:type="ns2:Hsp_score">2260</ns2:Hsp_score> <ns2:Hsp_evalue xsi:type="ns2:Hsp_evalue">0</ns2:Hsp_evalue> <ns2:Hsp_query-from xsi:type="ns2:Hsp_query-from">1 </ns2:Hsp_query-from> <ns2:Hsp_query-to xsi:type="ns2:Hsp_query-to">453 </ns2:Hsp_query-to> <ns2:Hsp_hit-from xsi:type="ns2:Hsp_hit-from">1</ns2:Hsp_hit-from> <ns2:Hsp_hit-to xsi:type="ns2:Hsp_hit-to">453</ns2:Hsp_hit-to> <ns2:Hsp_query-frame xsi:type="ns2:Hsp_query-frame">1 </ns2:Hsp_query-frame> <ns2:Hsp_hit-frame xsi:type="ns2:Hsp_hit-frame">1 </ns2:Hsp_hit-frame> <ns2:Hsp_identity xsi:type="ns2:Hsp_identity">412 </ns2:Hsp_identity> <ns2:Hsp_positive xsi:type="ns2:Hsp_positive">437 </ns2:Hsp_positive> <ns2:Hsp_align-len xsi:type="ns2:Hsp_align-len">453 </ns2:Hsp_align-len> <ns2:Hsp_qseq xsi:type="ns2:Hsp_qseq">MSSSGTPDLPVLLTDLKIQYTKIFINNEWHDSVSGKKFPVFNPATEEELCQVEEGDKEDVDKAVKAARQAFQIGSPWRTMDASERGRLLYKLADLIERDRLLLATMESMNGGKLYSNAYLNDLAGCIKTLRYCAGWADKIQGRTIPIDGNFFTYTRHEPIGVCGQIIPWNFPLVMLIWKIGPALSCGNTVVVKPAEQTPLTALHVASLIKEAGFPPGVVNIVPGYGPTAGAAISSHMDIDKVAFTGSTEVGKLIKEAAGKSNLKRVTLELGGKSPCIVLADADLDNAVEFAHHGVFYHQGQCCIAASRIFVEESIYDEFVRRSVERAKKYILGNPLTPGVTQGPQIDKEQYDKILDLIESGKKEGAKLECGGGPWGNKGYFVQPTVFSNVTDEMRIAKEEIFGPVQQIMKFKSLDDVIKRANNTFYGLSAGVFTKDIDKAITISSALQAGTVW </ns2:Hsp_qseq> <ns2:Hsp_hseq xsi:type="ns2:Hsp_hseq">MSSSAMPDVPAPLTNLQFKYTKIFINNEWHSSVSGKKFPVFNPATEEKLCEVEEGDKEDVDKAVKAARQAFQIGSPWRTMDASERGRLLNKLADLIERDHLLLATMEAMNGGKLFSNAYLMDLGGCIKTLRYCAGWADKIQGRTIPMDGNFFTYTRSEPVGVCGQIIPWNFPLLMFLWKIGPALSCGNTVVVKPAEQTPLTALHMGSLIKEAGFPPGVVNIVPGYGPTAGAAISSHMDVDKVAFTGSTEVGKLIKEAAGKSNLKRVSLELGGKSPCIVFADADLDNAVEFAHQGVFYHQGQCCIAASRLFVEESIYDEFVRRSVERAKKYVLGNPLTPGVSQGPQIDKEQYEKILDLIESGKKEGAKLECGGGPWGNKGYFIQPTVFSDVTDDMRIAKEEIFGPVQQIMKFKSLDDVIKRANNTFYGLSAGIFTNDIDKAITVSSALQSGTVW </ns2:Hsp_hseq> <ns2:Hsp_midline xsi:type="ns2:Hsp_midline">MSSS PD+P LT+L+ +YTKIFINNEWH SVSGKKFPVFNPATEE+LC+VEEGDKEDVDKAVKAARQAFQIGSPWRTMDASERGRLL KLADLIERD LLLATME+MNGGKL+SNAYL DL GCIKTLRYCAGWADKIQGRTIP+DGNFFTYTR EP+GVCGQIIPWNFPL+M +WKIGPALSCGNTVVVKPAEQTPLTALH+ SLIKEAGFPPGVVNIVPGYGPTAGAAISSHMD+DKVAFTGSTEVGKLIKEAAGKSNLKRV+LELGGKSPCIV ADADLDNAVEFAH GVFYHQGQCCIAASR+FVEESIYDEFVRRSVERAKKY+LGNPLTPGV+QGPQIDKEQY+KILDLIESGKKEGAKLECGGGPWGNKGYF+QPTVFS+VTD+MRIAKEEIFGPVQQIMKFKSLDDVIKRANNTFYGLSAG+FT DIDKAIT+SSALQ+GTVW</ns2:Hsp_midline> </ns2:Hsp> </ns2:Hit_hsps> </ns2:Hit> <ns2:Hit xsi:type="ns2:HitType"> <ns2:Hit_num xsi:type="ns2:Hit_num">5</ns2:Hit_num> <ns2:Hit_id xsi:type="ns2:Hit_id">sp|P15437|AL1A1_HORSE</ns2:Hit_id> <ns2:Hit_def xsi:type="ns2:Hit_def">Retinal dehydrogenase 1 OS=Equus caballus GN=ALDH1A1 PE=1 SV=1</ns2:Hit_def> <ns2:Hit_accession xsi:type="ns2:Hit_accession">P15437 </ns2:Hit_accession> <ns2:Hit_len xsi:type="ns2:Hit_len">500</ns2:Hit_len> <ns2:Hit_hsps xsi:type="ns2:Hit_hspsType"> <ns2:Hsp xsi:type="ns2:HspType"> <ns2:Hsp_num xsi:type="ns2:Hsp_num">1</ns2:Hsp_num> <ns2:Hsp_bit-score xsi:type="ns2:Hsp_bit-score">872.078 </ns2:Hsp_bit-score> <ns2:Hsp_score xsi:type="ns2:Hsp_score">2252</ns2:Hsp_score> <ns2:Hsp_evalue xsi:type="ns2:Hsp_evalue">0</ns2:Hsp_evalue> <ns2:Hsp_query-from xsi:type="ns2:Hsp_query-from">2 </ns2:Hsp_query-from> <ns2:Hsp_query-to xsi:type="ns2:Hsp_query-to">453 </ns2:Hsp_query-to> <ns2:Hsp_hit-from xsi:type="ns2:Hsp_hit-from">1</ns2:Hsp_hit-from> <ns2:Hsp_hit-to xsi:type="ns2:Hsp_hit-to">452</ns2:Hsp_hit-to> <ns2:Hsp_query-frame xsi:type="ns2:Hsp_query-frame">1 </ns2:Hsp_query-frame> <ns2:Hsp_hit-frame xsi:type="ns2:Hsp_hit-frame">1 </ns2:Hsp_hit-frame> <ns2:Hsp_identity xsi:type="ns2:Hsp_identity">410 </ns2:Hsp_identity> <ns2:Hsp_positive xsi:type="ns2:Hsp_positive">435 </ns2:Hsp_positive> <ns2:Hsp_align-len xsi:type="ns2:Hsp_align-len">452 </ns2:Hsp_align-len> <ns2:Hsp_qseq xsi:type="ns2:Hsp_qseq">SSSGTPDLPVLLTDLKIQYTKIFINNEWHDSVSGKKFPVFNPATEEELCQVEEGDKEDVDKAVKAARQAFQIGSPWRTMDASERGRLLYKLADLIERDRLLLATMESMNGGKLYSNAYLNDLAGCIKTLRYCAGWADKIQGRTIPIDGNFFTYTRHEPIGVCGQIIPWNFPLVMLIWKIGPALSCGNTVVVKPAEQTPLTALHVASLIKEAGFPPGVVNIVPGYGPTAGAAISSHMDIDKVAFTGSTEVGKLIKEAAGKSNLKRVTLELGGKSPCIVLADADLDNAVEFAHHGVFYHQGQCCIAASRIFVEESIYDEFVRRSVERAKKYILGNPLTPGVTQGPQIDKEQYDKILDLIESGKKEGAKLECGGGPWGNKGYFVQPTVFSNVTDEMRIAKEEIFGPVQQIMKFKSLDDVIKRANNTFYGLSAGVFTKDIDKAITISSALQAGTVW </ns2:Hsp_qseq> <ns2:Hsp_hseq xsi:type="ns2:Hsp_hseq">SSSGTPDLPVLLTDLKFQYTKIFINNEWHDSVSGKKFPVFNPATEEKLCEVEEGDKEDVNKAVAAARQAFQIGSPWRTMDASERGRLLYKLADLVERDRLILATMESMNGGKLFSNAYLMDLGGCLKTLRYCAGWADKIQGRTIPSDGNFFTYTRHEPVGVCGQILPWNFPLLMFLWKIAPALSCGNTVVVKPAEQTPLSALHVATLIKEAGFPPGVVNIVPGYGPTAGAAISSHMDIDKVAFTGSTEVGKLIKEAAGKSNLKRVTLELGGKSPFIVFADADLETALEVTHQALFYHQGQCCVAASRLFVEESIYDEFVRRSVERAKKYVLGNPLTPGVSQGPQIDKEQYDKILDLIESGKKEGAKLECGGGPWGNKGYFIQPTVFSNVSDEMRIAKEEIFGPVQQIMKFKSLDDVIKRANNTTYGLFAGSFTKDLDKAITVSAALQAGTVW </ns2:Hsp_hseq> <ns2:Hsp_midline xsi:type="ns2:Hsp_midline">SSSGTPDLPVLLTDLK QYTKIFINNEWHDSVSGKKFPVFNPATEE+LC+VEEGDKEDV+KAV AARQAFQIGSPWRTMDASERGRLLYKLADL+ERDRL+LATMESMNGGKL+SNAYL DL GC+KTLRYCAGWADKIQGRTIP DGNFFTYTRHEP+GVCGQI+PWNFPL+M +WKI PALSCGNTVVVKPAEQTPL+ALHVA+LIKEAGFPPGVVNIVPGYGPTAGAAISSHMDIDKVAFTGSTEVGKLIKEAAGKSNLKRVTLELGGKSP IV ADADL+ A+E H +FYHQGQCC+AASR+FVEESIYDEFVRRSVERAKKY+LGNPLTPGV+QGPQIDKEQYDKILDLIESGKKEGAKLECGGGPWGNKGYF+QPTVFSNV+DEMRIAKEEIFGPVQQIMKFKSLDDVIKRANNT YGL AG FTKD+DKAIT+S+ALQAGTVW</ns2:Hsp_midline> </ns2:Hsp> </ns2:Hit_hsps> </ns2:Hit> </ns2:Iteration_hits> <ns2:Iteration_stat xsi:type="ns2:Iteration_statType"> <ns2:Statistics xsi:type="ns2:StatisticsType"> <ns2:Statistics_db-num xsi:type="ns2:Statistics_db-num">516081 </ns2:Statistics_db-num> <ns2:Statistics_db-len xsi:type="ns2:Statistics_db-len">181677051 </ns2:Statistics_db-len> <ns2:Statistics_hsp-len xsi:type="ns2:Statistics_hsp-len">120 </ns2:Statistics_hsp-len> <ns2:Statistics_eff-space xsi:type="ns2:Statistics_eff-space">3.98759e+10 </ns2:Statistics_eff-space> <ns2:Statistics_kappa xsi:type="ns2:Statistics_kappa">0.041 </ns2:Statistics_kappa> <ns2:Statistics_lambda xsi:type="ns2:Statistics_lambda">0.267 </ns2:Statistics_lambda> <ns2:Statistics_entropy xsi:type="ns2:Statistics_entropy">0.14 </ns2:Statistics_entropy> </ns2:Statistics> </ns2:Iteration_stat> </ns2:Iteration> </ns2:BlastOutput_iterations> </BlastOutput> /BlastOutput/ns2:BlastOutput_iterations/ns2:Iteration/ns2:Iteration_hits/ns2:Hit/ns2:Hit_accession ns2 http://www.bccs.uni.no/schema/BlastOutput net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokegetStatusjobIdrunBlastpjobIdgetResultjobIdrunBlastpjobIdrunBlastpquerySequencequerySequencerunBlastpalignmentNumberalignmentNumbervaluerunBlastpdatabaseURIdatabaseURIvaluerunBlastpexpectValueexpectValuevaluerunBlastpgapOpenPenaltygapOpenPenaltyvaluerunBlastpmatrixmatrix_valuevaluerunBlastpwordsizewordsizevaluerunBlastpgapExtensionPenaltygapExtensionPenaltyvaluegetAccessionIdsxml_textgetResultblastOutputGetResult_output_BlastOutputgetResultblastOutputGetResult_output_DbStatusgetResultdbStatusgetStatus_statusgetStatusstatusgetAccessionIds_nodelistgetAccessionIdsnodelist 6b76799b-7627-482d-9894-44dc3d75edb1 2010-10-06 14:07:52.708 BST 7fce1d69-e337-4de8-b187-d58086e13c0a 2010-10-06 09:50:24.702 BST b4d97978-ad16-4cfb-ad8b-201e89b86dcb 2010-10-06 10:07:16.71 BST An attempt to implement in the BioXSD workflow described by Kalas et al., (2010) 2010-10-12 09:14:58.147 BST e1ff5573-f509-444d-b00b-7a5f318d5933 2010-10-06 09:20:58.478 BST 38c33071-053a-46a4-8d4f-05fe6d3992e9 2010-10-06 10:03:37.548 BST An attempt to implement in the BioXSD workflow described in 2010-10-12 09:13:39.826 BST 1e91ac43-cd66-46f4-8d84-4c6757d055dc 2010-10-06 10:45:41.86 BST e1b8df9c-8ea9-4095-9db4-fc0d849d5a30 2010-10-06 09:38:25.108 BST 502a4a72-2579-48d3-b4a5-d9df7651204f 2010-10-06 09:19:23.240 BST 56e01b49-6a46-4461-99d0-f61877d731d5 2010-10-06 10:43:14.782 BST 4538b068-1e0d-4c85-9674-299a74379d17 2010-10-06 09:35:30.542 BST ae5064aa-f335-41bb-aec3-85a9240f9bef 2010-10-06 10:17:44.554 BST Peter Li 2010-10-12 09:13:11.922 BST BioXSD example workflow 2010-10-12 09:13:23.578 BST An attempt to implement in the BioXSD workflow described by Kalas et al., (2010) Bioinformatics 26:i540-6. The workflow only calls one BioXSD web service (BLAST) since the second service (ClustalW) in the example workflow is currently down. 2010-10-12 09:16:20.209 BST a452c1cf-5c7d-46b2-900c-850698e8740c 2010-10-06 10:01:43.137 BST 4758c24f-7512-4963-a3a6-df76dd8aa6a2 2010-10-06 09:51:39.370 BST 624a61a2-3eb9-46a3-9f05-a7a738d48015 2010-10-12 09:16:22.89 BST ee8514ff-2f75-43b2-93da-8ddecbf88589 2010-10-06 10:28:48.933 BST 903afd44-c128-4d80-9fb4-3a3d3e922a81 2010-10-06 09:35:55.189 BST 656a4f86-04cb-40f7-ab78-718d5e50e4a3 2010-10-06 10:06:32.738 BST 95a86559-136c-4823-8fa6-80d62c125cf6 2010-10-06 09:59:55.554 BST Workflow6jobId00statusGetStatusparameters0parameters00net.sf.taverna.t2.activitieswsdl-activity1.2net.sf.taverna.t2.activities.wsdl.WSDLActivity http://www.bccs.uni.no/services/blastws/BlastPublic_2_2_21_ws0.wsdl GetStatus net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeGetStatus_inputJobId0output00net.sf.taverna.t2.activitieswsdl-activity1.2net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLInputSplitterActivity <s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="GetStatus" name="parameters" qname="{http://www.bccs.uni.no/service/Blast/}GetStatus"><s:elements><s:basetype optional="false" unbounded="false" typename="string" name="JobId" qname="{http://esysbio.bccs.uni.no/schema/JobSchema}JobIdType&gt;JobId" /></s:elements></s:complextype></s:extensions> false JobId 0 'text/plain' 0 output 0 'text/xml' net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeGetStatus_outputinput0Status00net.sf.taverna.t2.activitieswsdl-activity1.2net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLOutputSplitterActivity <s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="GetStatusResponse" name="parameters" qname="{http://www.bccs.uni.no/service/Blast/}GetStatusResponse"><s:elements><s:basetype optional="false" unbounded="false" typename="string" name="Status" qname="&gt;GetStatusResponse&gt;Status" /></s:elements></s:complextype></s:extensions> java.lang.String false input 0 'text/xml' 0 Status 0 'text/plain' net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeGetStatusparametersGetStatus_inputoutputGetStatus_inputJobIdjobIdGetStatus_outputinputGetStatusparametersstatusGetStatus_outputStatus e07bcd29-c903-487e-98a3-f3883d3e5d99 2010-10-06 10:04:57.656 BST 0f1b6ebb-f2c9-442a-b8cf-e42b242f43f9 2010-10-06 10:03:56.978 BST Workflow8jobId00blastOutputdbStatusGetResultparameters0parameters00net.sf.taverna.t2.activitieswsdl-activity1.2net.sf.taverna.t2.activities.wsdl.WSDLActivity http://www.bccs.uni.no/services/blastws/BlastPublic_2_2_21_ws0.wsdl GetResult net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeGetResult_inputJobId0output00net.sf.taverna.t2.activitieswsdl-activity1.2net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLInputSplitterActivity <s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="GetResult" name="parameters" qname="{http://www.bccs.uni.no/service/Blast/}GetResult"><s:elements><s:basetype optional="false" unbounded="false" typename="string" name="JobId" qname="{http://esysbio.bccs.uni.no/schema/JobSchema}JobIdType&gt;JobId" /></s:elements></s:complextype></s:extensions> false JobId 0 'text/plain' 0 output 0 'text/xml' net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeGetResult_outputinput0BlastOutput00DbStatus00net.sf.taverna.t2.activitieswsdl-activity1.2net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLOutputSplitterActivity <s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="GetResultResponse" name="parameters" qname="{http://www.bccs.uni.no/service/Blast/}GetResultResponse"><s:elements><s:complextype optional="true" unbounded="false" typename="BlastOutputType" name="BlastOutput" qname="GetResultResponseType&gt;BlastOutput"><s:elements><s:complextype optional="false" unbounded="false" typename="BlastOutput_program" name="BlastOutput_program" qname="{http://www.bccs.uni.no/schema/BlastOutput}BlastOutputType&gt;BlastOutput_program"><s:elements><s:basetype optional="false" unbounded="false" typename="string" name="value" qname="value" /></s:elements></s:complextype><s:complextype optional="false" unbounded="false" typename="BlastOutput_version" name="BlastOutput_version" qname="{http://www.bccs.uni.no/schema/BlastOutput}BlastOutputType&gt;BlastOutput_version"><s:elements><s:basetype optional="false" unbounded="false" typename="string" name="value" qname="value" /></s:elements></s:complextype><s:complextype optional="false" unbounded="false" typename="BlastOutput_reference" name="BlastOutput_reference" qname="{http://www.bccs.uni.no/schema/BlastOutput}BlastOutputType&gt;BlastOutput_reference"><s:elements><s:basetype optional="false" unbounded="false" typename="string" name="value" qname="value" /></s:elements></s:complextype><s:complextype optional="false" unbounded="false" typename="BlastOutput_db" name="BlastOutput_db" qname="{http://www.bccs.uni.no/schema/BlastOutput}BlastOutputType&gt;BlastOutput_db"><s:elements><s:basetype optional="false" unbounded="false" typename="string" name="value" qname="value" /></s:elements></s:complextype><s:complextype optional="false" unbounded="false" typename="BlastOutput_query-ID" name="BlastOutput_query-ID" qname="{http://www.bccs.uni.no/schema/BlastOutput}BlastOutputType&gt;BlastOutput_query-ID"><s:elements><s:basetype optional="false" unbounded="false" typename="string" name="value" qname="value" /></s:elements></s:complextype><s:complextype optional="false" unbounded="false" typename="BlastOutput_query-def" name="BlastOutput_query-def" qname="{http://www.bccs.uni.no/schema/BlastOutput}BlastOutputType&gt;BlastOutput_query-def"><s:elements><s:basetype optional="false" unbounded="false" typename="string" name="value" qname="value" /></s:elements></s:complextype><s:complextype optional="false" unbounded="false" typename="BlastOutput_query-len" name="BlastOutput_query-len" qname="{http://www.bccs.uni.no/schema/BlastOutput}BlastOutputType&gt;BlastOutput_query-len"><s:elements><s:basetype optional="false" unbounded="false" typename="integer" name="value" qname="value" /></s:elements></s:complextype><s:complextype optional="true" unbounded="false" typename="BlastOutput_query-seq" name="BlastOutput_query-seq" qname="{http://www.bccs.uni.no/schema/BlastOutput}BlastOutputType&gt;BlastOutput_query-seq"><s:elements><s:basetype optional="false" unbounded="false" typename="string" name="value" qname="value" /></s:elements></s:complextype><s:complextype optional="false" unbounded="false" typename="BlastOutput_param" name="BlastOutput_param" qname="{http://www.bccs.uni.no/schema/BlastOutput}BlastOutputType&gt;BlastOutput_param"><s:elements><s:complextype optional="false" unbounded="false" typename="Parameters" name="Parameters" qname="{http://www.bccs.uni.no/schema/BlastOutput}BlastOutput_paramType&gt;Parameters"><s:elements><s:complextype optional="true" unbounded="false" typename="Parameters_matrix" name="Parameters_matrix" qname="{http://www.bccs.uni.no/schema/BlastOutput}ParametersType&gt;Parameters_matrix"><s:elements /></s:complextype><s:complextype optional="false" unbounded="false" typename="Parameters_expect" name="Parameters_expect" qname="{http://www.bccs.uni.no/schema/BlastOutput}ParametersType&gt;Parameters_expect"><s:elements><s:basetype optional="false" unbounded="false" typename="float" name="value" qname="value" /></s:elements></s:complextype><s:complextype optional="true" unbounded="false" typename="Parameters_include" name="Parameters_include" qname="{http://www.bccs.uni.no/schema/BlastOutput}ParametersType&gt;Parameters_include"><s:elements><s:basetype optional="false" unbounded="false" typename="string" name="value" qname="value" /></s:elements></s:complextype><s:complextype optional="true" unbounded="false" typename="Parameters_sc-match" name="Parameters_sc-match" qname="{http://www.bccs.uni.no/schema/BlastOutput}ParametersType&gt;Parameters_sc-match"><s:elements><s:basetype optional="false" unbounded="false" typename="string" name="value" qname="value" /></s:elements></s:complextype><s:complextype optional="true" unbounded="false" typename="Parameters_sc-mismatch" name="Parameters_sc-mismatch" qname="{http://www.bccs.uni.no/schema/BlastOutput}ParametersType&gt;Parameters_sc-mismatch"><s:elements><s:basetype optional="false" unbounded="false" typename="integer" name="value" qname="value" /></s:elements></s:complextype><s:complextype optional="false" unbounded="false" typename="Parameters_gap-open" name="Parameters_gap-open" qname="{http://www.bccs.uni.no/schema/BlastOutput}ParametersType&gt;Parameters_gap-open"><s:elements><s:basetype optional="false" unbounded="false" typename="integer" name="value" qname="value" /></s:elements></s:complextype><s:complextype optional="false" unbounded="false" typename="Parameters_gap-extend" name="Parameters_gap-extend" qname="{http://www.bccs.uni.no/schema/BlastOutput}ParametersType&gt;Parameters_gap-extend"><s:elements><s:basetype optional="false" unbounded="false" typename="integer" name="value" qname="value" /></s:elements></s:complextype><s:complextype optional="true" unbounded="false" typename="Parameters_filter" name="Parameters_filter" qname="{http://www.bccs.uni.no/schema/BlastOutput}ParametersType&gt;Parameters_filter"><s:elements><s:basetype optional="false" unbounded="false" typename="string" name="value" qname="value" /></s:elements></s:complextype><s:complextype optional="true" unbounded="false" typename="Parameters_pattern" name="Parameters_pattern" qname="{http://www.bccs.uni.no/schema/BlastOutput}ParametersType&gt;Parameters_pattern"><s:elements><s:basetype optional="false" unbounded="false" typename="string" name="value" qname="value" /></s:elements></s:complextype><s:complextype optional="true" unbounded="false" typename="Parameters_entrez-query" name="Parameters_entrez-query" qname="{http://www.bccs.uni.no/schema/BlastOutput}ParametersType&gt;Parameters_entrez-query"><s:elements><s:basetype optional="false" unbounded="false" typename="string" name="value" qname="value" /></s:elements></s:complextype></s:elements></s:complextype></s:elements></s:complextype><s:complextype optional="false" unbounded="false" typename="BlastOutput_iterations" name="BlastOutput_iterations" qname="{http://www.bccs.uni.no/schema/BlastOutput}BlastOutputType&gt;BlastOutput_iterations"><s:elements><s:arraytype optional="true" unbounded="true" wrapped="false" typename="Iteration" name="Iteration" qname="{http://www.bccs.uni.no/schema/BlastOutput}BlastOutput_iterationsType&gt;Iteration"><s:elementtype><s:complextype optional="false" unbounded="false" typename="Iteration" name="" qname="{http://www.bccs.uni.no/schema/BlastOutput}Iteration"><s:elements><s:complextype optional="false" unbounded="false" typename="Iteration_iter-num" name="Iteration_iter-num" qname="{http://www.bccs.uni.no/schema/BlastOutput}IterationType&gt;Iteration_iter-num"><s:elements><s:basetype optional="false" unbounded="false" typename="integer" name="value" qname="value" /></s:elements></s:complextype><s:complextype optional="true" unbounded="false" typename="Iteration_query-ID" name="Iteration_query-ID" qname="{http://www.bccs.uni.no/schema/BlastOutput}IterationType&gt;Iteration_query-ID"><s:elements><s:basetype optional="false" unbounded="false" typename="string" name="value" qname="value" /></s:elements></s:complextype><s:complextype optional="true" unbounded="false" typename="Iteration_query-def" name="Iteration_query-def" qname="{http://www.bccs.uni.no/schema/BlastOutput}IterationType&gt;Iteration_query-def"><s:elements><s:basetype optional="false" unbounded="false" typename="string" name="value" qname="value" /></s:elements></s:complextype><s:complextype optional="true" unbounded="false" typename="Iteration_query-len" name="Iteration_query-len" qname="{http://www.bccs.uni.no/schema/BlastOutput}IterationType&gt;Iteration_query-len"><s:elements><s:basetype optional="false" unbounded="false" typename="string" name="value" qname="value" /></s:elements></s:complextype><s:complextype optional="true" unbounded="false" typename="Iteration_hits" name="Iteration_hits" qname="{http://www.bccs.uni.no/schema/BlastOutput}IterationType&gt;Iteration_hits"><s:elements><s:arraytype optional="true" unbounded="true" wrapped="false" typename="Hit" name="Hit" qname="{http://www.bccs.uni.no/schema/BlastOutput}Iteration_hitsType&gt;Hit"><s:elementtype><s:complextype optional="false" unbounded="false" typename="Hit" name="" qname="{http://www.bccs.uni.no/schema/BlastOutput}Hit"><s:elements><s:complextype optional="false" unbounded="false" typename="Hit_num" name="Hit_num" qname="{http://www.bccs.uni.no/schema/BlastOutput}HitType&gt;Hit_num"><s:elements><s:basetype optional="false" unbounded="false" typename="integer" name="value" qname="value" /></s:elements></s:complextype><s:complextype optional="false" unbounded="false" typename="Hit_id" name="Hit_id" qname="{http://www.bccs.uni.no/schema/BlastOutput}HitType&gt;Hit_id"><s:elements><s:basetype optional="false" unbounded="false" typename="string" name="value" qname="value" /></s:elements></s:complextype><s:complextype optional="false" unbounded="false" typename="Hit_def" name="Hit_def" qname="{http://www.bccs.uni.no/schema/BlastOutput}HitType&gt;Hit_def"><s:elements><s:basetype optional="false" unbounded="false" typename="string" name="value" qname="value" /></s:elements></s:complextype><s:complextype optional="false" unbounded="false" typename="Hit_accession" name="Hit_accession" qname="{http://www.bccs.uni.no/schema/BlastOutput}HitType&gt;Hit_accession"><s:elements><s:basetype optional="false" unbounded="false" typename="string" name="value" qname="value" /></s:elements></s:complextype><s:complextype optional="false" unbounded="false" typename="Hit_len" name="Hit_len" qname="{http://www.bccs.uni.no/schema/BlastOutput}HitType&gt;Hit_len"><s:elements><s:basetype optional="false" unbounded="false" typename="string" name="value" qname="value" /></s:elements></s:complextype><s:complextype optional="true" unbounded="false" typename="Hit_hsps" name="Hit_hsps" qname="{http://www.bccs.uni.no/schema/BlastOutput}HitType&gt;Hit_hsps"><s:elements><s:arraytype optional="true" unbounded="true" wrapped="false" typename="Hsp" name="Hsp" qname="{http://www.bccs.uni.no/schema/BlastOutput}Hit_hspsType&gt;Hsp"><s:elementtype><s:complextype optional="false" unbounded="false" typename="Hsp" name="" qname="{http://www.bccs.uni.no/schema/BlastOutput}Hsp"><s:elements><s:complextype optional="false" unbounded="false" typename="Hsp_num" name="Hsp_num" qname="{http://www.bccs.uni.no/schema/BlastOutput}HspType&gt;Hsp_num"><s:elements><s:basetype optional="false" unbounded="false" typename="integer" name="value" qname="value" /></s:elements></s:complextype><s:complextype optional="false" unbounded="false" typename="Hsp_bit-score" name="Hsp_bit-score" qname="{http://www.bccs.uni.no/schema/BlastOutput}HspType&gt;Hsp_bit-score"><s:elements><s:basetype optional="false" unbounded="false" typename="double" name="value" qname="value" /></s:elements></s:complextype><s:complextype optional="false" unbounded="false" typename="Hsp_score" name="Hsp_score" qname="{http://www.bccs.uni.no/schema/BlastOutput}HspType&gt;Hsp_score"><s:elements><s:basetype optional="false" unbounded="false" typename="integer" name="value" qname="value" /></s:elements></s:complextype><s:complextype optional="false" unbounded="false" typename="Hsp_evalue" name="Hsp_evalue" qname="{http://www.bccs.uni.no/schema/BlastOutput}HspType&gt;Hsp_evalue"><s:elements><s:basetype optional="false" unbounded="false" typename="double" name="value" qname="value" /></s:elements></s:complextype><s:complextype optional="false" unbounded="false" typename="Hsp_query-from" name="Hsp_query-from" qname="{http://www.bccs.uni.no/schema/BlastOutput}HspType&gt;Hsp_query-from"><s:elements><s:basetype optional="false" unbounded="false" typename="integer" name="value" qname="value" /></s:elements></s:complextype><s:complextype optional="false" unbounded="false" typename="Hsp_query-to" name="Hsp_query-to" qname="{http://www.bccs.uni.no/schema/BlastOutput}HspType&gt;Hsp_query-to"><s:elements><s:basetype optional="false" unbounded="false" typename="integer" name="value" qname="value" /></s:elements></s:complextype><s:complextype optional="false" unbounded="false" typename="Hsp_hit-from" name="Hsp_hit-from" qname="{http://www.bccs.uni.no/schema/BlastOutput}HspType&gt;Hsp_hit-from"><s:elements><s:basetype optional="false" unbounded="false" typename="integer" name="value" qname="value" /></s:elements></s:complextype><s:complextype optional="false" unbounded="false" typename="Hsp_hit-to" name="Hsp_hit-to" qname="{http://www.bccs.uni.no/schema/BlastOutput}HspType&gt;Hsp_hit-to"><s:elements><s:basetype optional="false" unbounded="false" typename="integer" name="value" qname="value" /></s:elements></s:complextype><s:complextype optional="true" unbounded="false" typename="Hsp_pattern-from" name="Hsp_pattern-from" qname="{http://www.bccs.uni.no/schema/BlastOutput}HspType&gt;Hsp_pattern-from"><s:elements><s:basetype optional="false" unbounded="false" typename="integer" name="value" qname="value" /></s:elements></s:complextype><s:complextype optional="true" unbounded="false" typename="Hsp_pattern-to" name="Hsp_pattern-to" qname="{http://www.bccs.uni.no/schema/BlastOutput}HspType&gt;Hsp_pattern-to"><s:elements><s:basetype optional="false" unbounded="false" typename="integer" name="value" qname="value" /></s:elements></s:complextype><s:complextype optional="true" unbounded="false" typename="Hsp_query-frame" name="Hsp_query-frame" qname="{http://www.bccs.uni.no/schema/BlastOutput}HspType&gt;Hsp_query-frame"><s:elements><s:basetype optional="false" unbounded="false" typename="integer" name="value" qname="value" /></s:elements></s:complextype><s:complextype optional="true" unbounded="false" typename="Hsp_hit-frame" name="Hsp_hit-frame" qname="{http://www.bccs.uni.no/schema/BlastOutput}HspType&gt;Hsp_hit-frame"><s:elements><s:basetype optional="false" unbounded="false" typename="integer" name="value" qname="value" /></s:elements></s:complextype><s:complextype optional="true" unbounded="false" typename="Hsp_identity" name="Hsp_identity" qname="{http://www.bccs.uni.no/schema/BlastOutput}HspType&gt;Hsp_identity"><s:elements><s:basetype optional="false" unbounded="false" typename="integer" name="value" qname="value" /></s:elements></s:complextype><s:complextype optional="true" unbounded="false" typename="Hsp_positive" name="Hsp_positive" qname="{http://www.bccs.uni.no/schema/BlastOutput}HspType&gt;Hsp_positive"><s:elements><s:basetype optional="false" unbounded="false" typename="integer" name="value" qname="value" /></s:elements></s:complextype><s:complextype optional="true" unbounded="false" typename="Hsp_gaps" name="Hsp_gaps" qname="{http://www.bccs.uni.no/schema/BlastOutput}HspType&gt;Hsp_gaps"><s:elements><s:basetype optional="false" unbounded="false" typename="string" name="value" qname="value" /></s:elements></s:complextype><s:complextype optional="true" unbounded="false" typename="Hsp_align-len" name="Hsp_align-len" qname="{http://www.bccs.uni.no/schema/BlastOutput}HspType&gt;Hsp_align-len"><s:elements><s:basetype optional="false" unbounded="false" typename="integer" name="value" qname="value" /></s:elements></s:complextype><s:complextype optional="true" unbounded="false" typename="Hsp_density" name="Hsp_density" qname="{http://www.bccs.uni.no/schema/BlastOutput}HspType&gt;Hsp_density"><s:elements><s:basetype optional="false" unbounded="false" typename="string" name="value" qname="value" /></s:elements></s:complextype><s:complextype optional="false" unbounded="false" typename="Hsp_qseq" name="Hsp_qseq" qname="{http://www.bccs.uni.no/schema/BlastOutput}HspType&gt;Hsp_qseq"><s:elements><s:basetype optional="false" unbounded="false" typename="string" name="value" qname="value" /></s:elements></s:complextype><s:complextype optional="false" unbounded="false" typename="Hsp_hseq" name="Hsp_hseq" qname="{http://www.bccs.uni.no/schema/BlastOutput}HspType&gt;Hsp_hseq"><s:elements><s:basetype optional="false" unbounded="false" typename="string" name="value" qname="value" /></s:elements></s:complextype><s:complextype optional="true" unbounded="false" typename="Hsp_midline" name="Hsp_midline" qname="{http://www.bccs.uni.no/schema/BlastOutput}HspType&gt;Hsp_midline"><s:elements><s:basetype optional="false" unbounded="false" typename="string" name="value" qname="value" /></s:elements></s:complextype></s:elements></s:complextype></s:elementtype></s:arraytype></s:elements></s:complextype></s:elements></s:complextype></s:elementtype></s:arraytype></s:elements></s:complextype><s:complextype optional="true" unbounded="false" typename="Iteration_stat" name="Iteration_stat" qname="{http://www.bccs.uni.no/schema/BlastOutput}IterationType&gt;Iteration_stat"><s:elements><s:complextype optional="false" unbounded="false" typename="Statistics" name="Statistics" qname="{http://www.bccs.uni.no/schema/BlastOutput}Iteration_statType&gt;Statistics"><s:elements><s:complextype optional="false" unbounded="false" typename="Statistics_db-num" name="Statistics_db-num" qname="{http://www.bccs.uni.no/schema/BlastOutput}StatisticsType&gt;Statistics_db-num"><s:elements><s:basetype optional="false" unbounded="false" typename="integer" name="value" qname="value" /></s:elements></s:complextype><s:complextype optional="false" unbounded="false" typename="Statistics_db-len" name="Statistics_db-len" qname="{http://www.bccs.uni.no/schema/BlastOutput}StatisticsType&gt;Statistics_db-len"><s:elements><s:basetype optional="false" unbounded="false" typename="integer" name="value" qname="value" /></s:elements></s:complextype><s:complextype optional="false" unbounded="false" typename="Statistics_hsp-len" name="Statistics_hsp-len" qname="{http://www.bccs.uni.no/schema/BlastOutput}StatisticsType&gt;Statistics_hsp-len"><s:elements><s:basetype optional="false" unbounded="false" typename="integer" name="value" qname="value" /></s:elements></s:complextype><s:complextype optional="false" unbounded="false" typename="Statistics_eff-space" name="Statistics_eff-space" qname="{http://www.bccs.uni.no/schema/BlastOutput}StatisticsType&gt;Statistics_eff-space"><s:elements><s:basetype optional="false" unbounded="false" typename="float" name="value" qname="value" /></s:elements></s:complextype><s:complextype optional="false" unbounded="false" typename="Statistics_kappa" name="Statistics_kappa" qname="{http://www.bccs.uni.no/schema/BlastOutput}StatisticsType&gt;Statistics_kappa"><s:elements><s:basetype optional="false" unbounded="false" typename="double" name="value" qname="value" /></s:elements></s:complextype><s:complextype optional="false" unbounded="false" typename="Statistics_lambda" name="Statistics_lambda" qname="{http://www.bccs.uni.no/schema/BlastOutput}StatisticsType&gt;Statistics_lambda"><s:elements><s:basetype optional="false" unbounded="false" typename="double" name="value" qname="value" /></s:elements></s:complextype><s:complextype optional="false" unbounded="false" typename="Statistics_entropy" name="Statistics_entropy" qname="{http://www.bccs.uni.no/schema/BlastOutput}StatisticsType&gt;Statistics_entropy"><s:elements><s:basetype optional="false" unbounded="false" typename="double" name="value" qname="value" /></s:elements></s:complextype></s:elements></s:complextype></s:elements></s:complextype><s:complextype optional="true" unbounded="false" typename="Iteration_message" name="Iteration_message" qname="{http://www.bccs.uni.no/schema/BlastOutput}IterationType&gt;Iteration_message"><s:elements><s:basetype optional="false" unbounded="false" typename="string" name="value" qname="value" /></s:elements></s:complextype></s:elements></s:complextype></s:elementtype></s:arraytype></s:elements></s:complextype><s:complextype optional="true" unbounded="false" typename="BlastOutput_mbstat" name="BlastOutput_mbstat" qname="{http://www.bccs.uni.no/schema/BlastOutput}BlastOutputType&gt;BlastOutput_mbstat"><s:elements><s:complextype optional="false" unbounded="false" typename="Statistics" name="Statistics" qname="{http://www.bccs.uni.no/schema/BlastOutput}BlastOutput_mbstatType&gt;Statistics"><s:elements><s:complextype id="{http://www.bccs.uni.no/schema/BlastOutput}StatisticsType&gt;Statistics_db-num" optional="false" unbounded="false" typename="Statistics_db-num" name="Statistics_db-num" /><s:complextype id="{http://www.bccs.uni.no/schema/BlastOutput}StatisticsType&gt;Statistics_db-len" optional="false" unbounded="false" typename="Statistics_db-len" name="Statistics_db-len" /><s:complextype id="{http://www.bccs.uni.no/schema/BlastOutput}StatisticsType&gt;Statistics_hsp-len" optional="false" unbounded="false" typename="Statistics_hsp-len" name="Statistics_hsp-len" /><s:complextype id="{http://www.bccs.uni.no/schema/BlastOutput}StatisticsType&gt;Statistics_eff-space" optional="false" unbounded="false" typename="Statistics_eff-space" name="Statistics_eff-space" /><s:complextype id="{http://www.bccs.uni.no/schema/BlastOutput}StatisticsType&gt;Statistics_kappa" optional="false" unbounded="false" typename="Statistics_kappa" name="Statistics_kappa" /><s:complextype id="{http://www.bccs.uni.no/schema/BlastOutput}StatisticsType&gt;Statistics_lambda" optional="false" unbounded="false" typename="Statistics_lambda" name="Statistics_lambda" /><s:complextype id="{http://www.bccs.uni.no/schema/BlastOutput}StatisticsType&gt;Statistics_entropy" optional="false" unbounded="false" typename="Statistics_entropy" name="Statistics_entropy" /></s:elements></s:complextype></s:elements></s:complextype></s:elements></s:complextype><s:basetype optional="true" unbounded="false" typename="string" name="DbStatus" qname="GetResultResponseType&gt;DbStatus" /></s:elements></s:complextype></s:extensions> java.lang.String false input 0 'text/xml' 0 BlastOutput 0 'text/xml' 0 DbStatus 0 'text/plain' net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeGetResultparametersGetResult_inputoutputGetResult_inputJobIdjobIdGetResult_outputinputGetResultparametersblastOutputGetResult_outputBlastOutputdbStatusGetResult_outputDbStatus 20c09db8-9ee6-4ceb-bf00-10dee505f520 2010-10-06 10:27:24.60 BST Workflow15querySequence11 <xml-fragment xmlns:bx="http://bioxsd.org/BioXSD-0.4"><bx:sequence>MSSSGTPDLPVLLTDLKIQYTKIFINNEWHDSVSGKKFPVFNPATEEELCQVEEGDKEDVDKAVKAARQAFQIGSPWRTMDASERGRLLYKLADLIERDRLLLATMESMNGGKLYSNAYLNDLAGCIKTLRYCAGWADKIQGRTIPIDGNFFTYTRHEPIGVCGQIIPWNFPLVMLIWKIGPALSCGNTVVVKPAEQTPLTALHVASLIKEAGFPPGVVNIVPGYGPTAGAAISSHMDIDKVAFTGSTEVGKLIKEAAGKSNLKRVTLELGGKSPCIVLADADLDNAVEFAHHGVFYHQGQCCIAASRIFVEESIYDEFVRRSVERAKKYILGNPLTPGVTQGPQIDKEQYDKILDLIESGKKEGAKLECGGGPWGNKGYFVQPTVFSNVTDEMRIAKEEIFGPVQQIMKFKSLDDVIKRANNTFYGLSAGVFTKDIDKAITISSALQAGTVW</bx:sequence><bx:formalReference><bx:accession>XP_001143065</bx:accession></bx:formalReference></xml-fragment> 2010-10-06 10:36:15.380 BST alignmentNumber00databaseURI00expectValue00gapOpenPenalty00matrix00wordsize00gapExtensionPenalty00jobIdRunBlastpparameters0parameters00net.sf.taverna.t2.activitieswsdl-activity1.2net.sf.taverna.t2.activities.wsdl.WSDLActivity http://www.bccs.uni.no/services/blastws/BlastPublic_2_2_21_ws0.wsdl RunBlastp net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeRunBlastp_inputQuerySequence1AlignmentNumber0DatabaseURI0ExpectValue0GapOpenPenalty0Matrix0WordSize0GapExtensionPenalty0output00net.sf.taverna.t2.activitieswsdl-activity1.2net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLInputSplitterActivity <s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="RunBlastp" name="parameters" qname="{http://www.bccs.uni.no/service/Blast/}RunBlastp"><s:elements><s:arraytype optional="false" unbounded="true" wrapped="false" typename="AminoacidSequenceRecord" name="QuerySequence" qname="{http://esysbio.bccs.uni.no/schema/BlastParameterSchema}BlastpParametersType&gt;QuerySequence"><s:elementtype><s:complextype optional="false" unbounded="false" typename="AminoacidSequenceRecord" name="" qname="{http://bioxsd.org/BioXSD-0.4}AminoacidSequenceRecord"><s:elements><s:basetype optional="false" unbounded="false" typename="string" name="sequence" qname="{http://bioxsd.org/BioXSD-0.4}AminoacidSequenceRecord&gt;sequence" /><s:complextype optional="true" unbounded="false" typename="Species" name="species" qname="{http://bioxsd.org/BioXSD-0.4}AminoacidSequenceRecord&gt;species"><s:elements><s:basetype optional="true" unbounded="false" typename="string" name="name" qname="{http://bioxsd.org/BioXSD-0.4}Species&gt;name" /><s:basetype optional="true" unbounded="false" typename="string" name="note" qname="{http://bioxsd.org/BioXSD-0.4}Species&gt;note" /></s:elements></s:complextype><s:basetype optional="true" unbounded="false" typename="string" name="customName" qname="{http://bioxsd.org/BioXSD-0.4}AminoacidSequenceRecord&gt;customName" /><s:basetype optional="true" unbounded="false" typename="string" name="customNote" qname="{http://bioxsd.org/BioXSD-0.4}AminoacidSequenceRecord&gt;customNote" /><s:complextype optional="true" unbounded="false" typename="SequenceReference" name="formalReference" qname="{http://bioxsd.org/BioXSD-0.4}AminoacidSequenceRecord&gt;formalReference"><s:elements><s:basetype optional="true" unbounded="false" typename="string" name="sequenceVersion" qname="{http://bioxsd.org/BioXSD-0.4}SequenceReference&gt;sequenceVersion" /><s:basetype optional="true" unbounded="false" typename="string" name="isoformAccession" qname="{http://bioxsd.org/BioXSD-0.4}SequenceReference&gt;isoformAccession" /><s:basetype optional="true" unbounded="false" typename="string" name="isoformNote" qname="{http://bioxsd.org/BioXSD-0.4}SequenceReference&gt;isoformNote" /><s:complextype optional="true" unbounded="false" typename="SequencePosition" name="subsequencePosition" qname="{http://bioxsd.org/BioXSD-0.4}SequenceReference&gt;subsequencePosition"><s:elements><s:arraytype optional="true" unbounded="true" wrapped="false" typename="SequenceSegment" name="segment" qname="{http://bioxsd.org/BioXSD-0.4}SequencePosition&gt;segment"><s:elementtype><s:complextype optional="false" unbounded="false" typename="SequenceSegment" name="" qname="{http://bioxsd.org/BioXSD-0.4}SequenceSegment"><s:elements><s:basetype optional="false" unbounded="false" typename="string" name="min" qname="{http://bioxsd.org/BioXSD-0.4}SequenceSegment&gt;min" /><s:basetype optional="false" unbounded="false" typename="string" name="max" qname="{http://bioxsd.org/BioXSD-0.4}SequenceSegment&gt;max" /><s:basetype optional="true" unbounded="false" typename="string" name="strand" qname="{http://bioxsd.org/BioXSD-0.4}SequenceSegment&gt;strand" /></s:elements></s:complextype></s:elementtype></s:arraytype><s:basetype optional="true" unbounded="false" typename="string" name="point" qname="{http://bioxsd.org/BioXSD-0.4}SequencePosition&gt;point" /><s:basetype optional="true" unbounded="false" typename="string" name="insertion" qname="{http://bioxsd.org/BioXSD-0.4}SequencePosition&gt;insertion" /><s:basetype optional="true" unbounded="false" typename="string" name="strand" qname="{http://bioxsd.org/BioXSD-0.4}SequencePosition&gt;strand" /><s:complextype optional="true" unbounded="false" typename="OutsideSequencePosition" name="outside" qname="{http://bioxsd.org/BioXSD-0.4}SequencePosition&gt;outside"><s:elements><s:basetype optional="false" unbounded="false" typename="string" name="correspondance" qname="{http://bioxsd.org/BioXSD-0.4}OutsideSequencePosition&gt;correspondance" /><s:arraytype optional="true" unbounded="true" wrapped="false" typename="OutsideSequenceSegment" name="segment" qname="{http://bioxsd.org/BioXSD-0.4}OutsideSequencePosition&gt;segment"><s:elementtype><s:complextype optional="false" unbounded="false" typename="OutsideSequenceSegment" name="" qname="{http://bioxsd.org/BioXSD-0.4}OutsideSequenceSegment"><s:elements><s:basetype optional="false" unbounded="false" typename="string" name="min" qname="{http://bioxsd.org/BioXSD-0.4}OutsideSequenceSegment&gt;min" /><s:basetype optional="false" unbounded="false" typename="string" name="max" qname="{http://bioxsd.org/BioXSD-0.4}OutsideSequenceSegment&gt;max" /><s:basetype optional="true" unbounded="false" typename="string" name="strand" qname="{http://bioxsd.org/BioXSD-0.4}OutsideSequenceSegment&gt;strand" /></s:elements></s:complextype></s:elementtype></s:arraytype><s:basetype optional="true" unbounded="false" typename="string" name="point" qname="{http://bioxsd.org/BioXSD-0.4}OutsideSequencePosition&gt;point" /><s:basetype optional="true" unbounded="false" typename="string" name="insertion" qname="{http://bioxsd.org/BioXSD-0.4}OutsideSequencePosition&gt;insertion" /><s:basetype optional="true" unbounded="false" typename="string" name="strand" qname="{http://bioxsd.org/BioXSD-0.4}OutsideSequencePosition&gt;strand" /><s:basetype optional="true" unbounded="false" typename="string" name="chromosome" qname="{http://bioxsd.org/BioXSD-0.4}OutsideSequencePosition&gt;chromosome" /></s:elements></s:complextype><s:basetype optional="true" unbounded="false" typename="string" name="chromosome" qname="{http://bioxsd.org/BioXSD-0.4}SequencePosition&gt;chromosome" /></s:elements></s:complextype><s:basetype optional="true" unbounded="false" typename="string" name="supersequence" qname="{http://bioxsd.org/BioXSD-0.4}SequenceReference&gt;supersequence" /><s:basetype optional="true" unbounded="false" typename="string" name="supersequenceCustomName" qname="{http://bioxsd.org/BioXSD-0.4}SequenceReference&gt;supersequenceCustomName" /></s:elements></s:complextype><s:complextype optional="true" unbounded="false" typename="AminoacidTranslationData" name="translationData" qname="{http://bioxsd.org/BioXSD-0.4}AminoacidSequenceRecord&gt;translationData"><s:elements><s:complextype optional="true" unbounded="false" typename="GeneticCode" name="geneticCode" qname="{http://bioxsd.org/BioXSD-0.4}AminoacidTranslationData&gt;geneticCode"><s:elements><s:complextype optional="true" unbounded="false" typename="EntryReference" name="reference" qname="{http://bioxsd.org/BioXSD-0.4}GeneticCode&gt;reference"><s:elements><s:basetype optional="true" unbounded="false" typename="string" name="accession" qname="{http://bioxsd.org/BioXSD-0.4}EntryReference&gt;accession" /><s:basetype optional="true" unbounded="false" typename="string" name="entryUri" qname="{http://bioxsd.org/BioXSD-0.4}EntryReference&gt;entryUri" /><s:basetype optional="true" unbounded="false" typename="string" name="entryVersion" qname="{http://bioxsd.org/BioXSD-0.4}EntryReference&gt;entryVersion" /><s:basetype optional="true" unbounded="false" typename="date" name="date" qname="{http://bioxsd.org/BioXSD-0.4}EntryReference&gt;date" /></s:elements></s:complextype><s:arraytype optional="true" unbounded="true" wrapped="false" typename="&gt;GeneticCode&gt;codon" name="codon" qname="{http://bioxsd.org/BioXSD-0.4}GeneticCode&gt;codon"><s:elementtype><s:complextype optional="false" unbounded="false" typename="&gt;GeneticCode&gt;codon" name="" qname="{http://bioxsd.org/BioXSD-0.4}&gt;GeneticCode&gt;codon"><s:elements /></s:complextype></s:elementtype></s:arraytype></s:elements></s:complextype></s:elements></s:complextype></s:elements></s:complextype></s:elementtype></s:arraytype><s:basetype optional="false" unbounded="false" typename="string" name="DatabaseURI" qname="{http://esysbio.bccs.uni.no/schema/BlastParameterSchema}BlastpParametersType&gt;DatabaseURI" /><s:basetype optional="false" unbounded="false" typename="int" name="AlignmentNumber" qname="{http://esysbio.bccs.uni.no/schema/BlastParameterSchema}BlastpParametersType&gt;AlignmentNumber" /><s:basetype optional="false" unbounded="false" typename="double" name="ExpectValue" qname="{http://esysbio.bccs.uni.no/schema/BlastParameterSchema}BlastpParametersType&gt;ExpectValue" /><s:basetype optional="false" unbounded="false" typename="int" name="WordSize" qname="{http://esysbio.bccs.uni.no/schema/BlastParameterSchema}BlastpParametersType&gt;WordSize" /><s:basetype optional="false" unbounded="false" typename="string" name="Matrix" qname="{http://esysbio.bccs.uni.no/schema/BlastParameterSchema}BlastpParametersType&gt;Matrix" /><s:basetype optional="false" unbounded="false" typename="int" name="GapOpenPenalty" qname="{http://esysbio.bccs.uni.no/schema/BlastParameterSchema}BlastpParametersType&gt;GapOpenPenalty" /><s:basetype optional="false" unbounded="false" typename="int" name="GapExtensionPenalty" qname="{http://esysbio.bccs.uni.no/schema/BlastParameterSchema}BlastpParametersType&gt;GapExtensionPenalty" /></s:elements></s:complextype></s:extensions> false QuerySequence 1 l('text/xml') false DatabaseURI 0 'text/plain' false AlignmentNumber 0 'text/plain' false ExpectValue 0 'text/plain' false WordSize 0 'text/plain' false Matrix 0 'text/plain' false GapOpenPenalty 0 'text/plain' false GapExtensionPenalty 0 'text/plain' 0 output 0 'text/xml' net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeRunBlastp_outputinput0JobId00net.sf.taverna.t2.activitieswsdl-activity1.2net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLOutputSplitterActivity <s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="RunBlastpResponse" name="parameters" qname="{http://www.bccs.uni.no/service/Blast/}RunBlastpResponse"><s:elements><s:basetype optional="false" unbounded="false" typename="string" name="JobId" qname="{http://esysbio.bccs.uni.no/schema/JobSchema}JobIdType&gt;JobId" /></s:elements></s:complextype></s:extensions> java.lang.String false input 0 'text/xml' 0 JobId 0 'text/plain' net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeRunBlastpparametersRunBlastp_inputoutputRunBlastp_inputQuerySequencequerySequenceRunBlastp_inputAlignmentNumberalignmentNumberRunBlastp_inputDatabaseURIdatabaseURIRunBlastp_inputExpectValueexpectValueRunBlastp_inputGapOpenPenaltygapOpenPenaltyRunBlastp_inputMatrixmatrixRunBlastp_inputWordSizewordsizeRunBlastp_inputGapExtensionPenaltygapExtensionPenaltyRunBlastp_outputinputRunBlastpparametersjobIdRunBlastp_outputJobId 744d417d-8ceb-4109-a0a3-89572645041e 2010-10-06 10:45:25.934 BST c3850e6b-4673-46c0-a135-60efe10fde26 2010-10-06 10:40:13.890 BST