BioXSD_example_workflowquerySequence11
A query protein sequence in BioXSD format
2010-10-12 09:13:02.199 BST
<xml-fragment xmlns:bx="http://bioxsd.org/BioXSD-0.4"><bx:sequence>MSSSGTPDLPVLLTDLKIQYTKIFINNEWHDSVSGKKFPVFNPATEEELCQVEEGDKEDVDKAVKAARQAFQIGSPWRTMDASERGRLLYKLADLIERDRLLLATMESMNGGKLYSNAYLNDLAGCIKTLRYCAGWADKIQGRTIPIDGNFFTYTRHEPIGVCGQIIPWNFPLVMLIWKIGPALSCGNTVVVKPAEQTPLTALHVASLIKEAGFPPGVVNIVPGYGPTAGAAISSHMDIDKVAFTGSTEVGKLIKEAAGKSNLKRVTLELGGKSPCIVLADADLDNAVEFAHHGVFYHQGQCCIAASRIFVEESIYDEFVRRSVERAKKYILGNPLTPGVTQGPQIDKEQYDKILDLIESGKKEGAKLECGGGPWGNKGYFVQPTVFSNVTDEMRIAKEEIFGPVQQIMKFKSLDDVIKRANNTFYGLSAGVFTKDIDKAITISSALQAGTVW</bx:sequence><bx:formalReference><bx:accession>XP_001143065</bx:accession></bx:formalReference></xml-fragment>
2010-10-06 09:38:23.446 BST
<xml-fragment xmlns:bx=\"http://bioxsd.org/BioXSD-0.4\"><bx:sequence>MSSSGTPDLPVLLTDLKIQYTKIFINNEWHDSVSGKKFPVFNPATEEELCQVEEGDKEDVDKAVKAARQAFQIGSPWRTMDASERGRLLYKLADLIERDRLLLATMESMNGGKLYSNAYLNDLAGCIKTLRYCAGWADKIQGRTIPIDGNFFTYTRHEPIGVCGQIIPWNFPLVMLIWKIGPALSCGNTVVVKPAEQTPLTALHVASLIKEAGFPPGVVNIVPGYGPTAGAAISSHMDIDKVAFTGSTEVGKLIKEAAGKSNLKRVTLELGGKSPCIVLADADLDNAVEFAHHGVFYHQGQCCIAASRIFVEESIYDEFVRRSVERAKKYILGNPLTPGVTQGPQIDKEQYDKILDLIESGKKEGAKLECGGGPWGNKGYFVQPTVFSNVTDEMRIAKEEIFGPVQQIMKFKSLDDVIKRANNTFYGLSAGVFTKDIDKAITISSALQAGTVW</bx:sequence><bx:formalReference><bx:accession>XP_001143065</bx:accession></bx:formalReference></xml-fragment>
2010-10-06 09:35:53.425 BST
GetResult_output_BlastOutputGetResult_output_DbStatusgetStatus_statusgetAccessionIds_nodelistgetStatusjobId0status00net.sf.taverna.t2.activitiesdataflow-activity1.2net.sf.taverna.t2.activities.dataflow.DataflowActivitynet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Loop
<activity xmlns="http://taverna.sf.net/2008/xml/t2flow"><raven><group>net.sf.taverna.t2.activities</group><artifact>beanshell-activity</artifact><version>1.2</version></raven><class>net.sf.taverna.t2.activities.beanshell.BeanshellActivity</class><inputMap /><outputMap /><configBean encoding="xstream"><net.sf.taverna.t2.activities.beanshell.BeanshellActivityConfigurationBean xmlns="">
<script>loop = "" + ! status.equals("COMPLETE");
if ("true".matches(loop)) {
Thread.sleep(15000);
}</script>
<dependencies />
<classLoaderSharing>workflow</classLoaderSharing>
<localDependencies />
<artifactDependencies />
<inputs>
<net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean>
<translatedElementType>java.lang.String</translatedElementType>
<allowsLiteralValues>true</allowsLiteralValues>
<name>status</name>
<depth>0</depth>
</net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean>
</inputs>
<outputs>
<net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityOutputPortDefinitionBean>
<granularDepth>0</granularDepth>
<name>loop</name>
<depth>0</depth>
</net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityOutputPortDefinitionBean>
</outputs>
</net.sf.taverna.t2.activities.beanshell.BeanshellActivityConfigurationBean></configBean><annotations /></activity>
true
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokegetResultjobId0dbStatus00blastOutput00net.sf.taverna.t2.activitiesdataflow-activity1.2net.sf.taverna.t2.activities.dataflow.DataflowActivitynet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokerunBlastpquerySequence1alignmentNumber0databaseURI0expectValue0gapOpenPenalty0matrix0wordsize0gapExtensionPenalty0jobId00net.sf.taverna.t2.activitiesdataflow-activity1.2net.sf.taverna.t2.activities.dataflow.DataflowActivitynet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokealignmentNumbervalue00net.sf.taverna.t2.activitiesstringconstant-activity1.2net.sf.taverna.t2.activities.stringconstant.StringConstantActivity
5
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokedatabaseURIvalue00net.sf.taverna.t2.activitiesstringconstant-activity1.2net.sf.taverna.t2.activities.stringconstant.StringConstantActivity
Swiss-Prot
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeexpectValuevalue00net.sf.taverna.t2.activitiesstringconstant-activity1.2net.sf.taverna.t2.activities.stringconstant.StringConstantActivity
10
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokegapOpenPenaltyvalue00net.sf.taverna.t2.activitiesstringconstant-activity1.2net.sf.taverna.t2.activities.stringconstant.StringConstantActivity
-1
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokematrix_valuevalue00net.sf.taverna.t2.activitiesstringconstant-activity1.2net.sf.taverna.t2.activities.stringconstant.StringConstantActivity
BLOSUM62
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokewordsizevalue00net.sf.taverna.t2.activitiesstringconstant-activity1.2net.sf.taverna.t2.activities.stringconstant.StringConstantActivity
0
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokegapExtensionPenaltyvalue00net.sf.taverna.t2.activitiesstringconstant-activity1.2net.sf.taverna.t2.activities.stringconstant.StringConstantActivity
-1
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokegetAccessionIdsxml_text0nodelist11net.sf.taverna.t2.ui-activitiesxpath-activity0.3net.sf.taverna.t2.activities.xpath.XPathActivity
<?xml version="1.0" encoding="UTF-8"?>
<BlastOutput xmlns:ns2="http://www.bccs.uni.no/schema/BlastOutput">
<ns2:BlastOutput_program xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:type="ns2:BlastOutput_program">blastp</ns2:BlastOutput_program>
<ns2:BlastOutput_version xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:type="ns2:BlastOutput_version">blastp 2.2.20 [Feb-08-2009]</ns2:BlastOutput_version>
<ns2:BlastOutput_reference xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:type="ns2:BlastOutput_reference">~Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro
A. Schaffer, ~Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), ~"Gapped BLAST and PSI-BLAST: a new generation of
protein database search~programs", Nucleic Acids Res. 25:3389-3402.
</ns2:BlastOutput_reference>
<ns2:BlastOutput_db xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:type="ns2:BlastOutput_db">/home/esysbio/pyws/files/blastws/databases/Swiss-Prot
</ns2:BlastOutput_db>
<ns2:BlastOutput_query-ID xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:type="ns2:BlastOutput_query-ID">lcl|1_0</ns2:BlastOutput_query-ID>
<ns2:BlastOutput_query-def xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:type="ns2:BlastOutput_query-def">None</ns2:BlastOutput_query-def>
<ns2:BlastOutput_query-len xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:type="ns2:BlastOutput_query-len">453</ns2:BlastOutput_query-len>
<ns2:BlastOutput_param xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:type="ns2:BlastOutput_paramType">
<ns2:Parameters xsi:type="ns2:ParametersType">
<ns2:Parameters_matrix xsi:type="ns2:Parameters_matrix">BLOSUM62
</ns2:Parameters_matrix>
<ns2:Parameters_expect xsi:type="ns2:Parameters_expect">10
</ns2:Parameters_expect>
<ns2:Parameters_gap-open xsi:type="ns2:Parameters_gap-open">11
</ns2:Parameters_gap-open>
<ns2:Parameters_gap-extend xsi:type="ns2:Parameters_gap-extend">1
</ns2:Parameters_gap-extend>
<ns2:Parameters_filter xsi:type="ns2:Parameters_filter">F
</ns2:Parameters_filter>
</ns2:Parameters>
</ns2:BlastOutput_param>
<ns2:BlastOutput_iterations xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:type="ns2:BlastOutput_iterationsType">
<ns2:Iteration xsi:type="ns2:IterationType">
<ns2:Iteration_iter-num xsi:type="ns2:Iteration_iter-num">1
</ns2:Iteration_iter-num>
<ns2:Iteration_query-ID xsi:type="ns2:Iteration_query-ID">lcl|1_0
</ns2:Iteration_query-ID>
<ns2:Iteration_query-def xsi:type="ns2:Iteration_query-def">None
</ns2:Iteration_query-def>
<ns2:Iteration_query-len xsi:type="ns2:Iteration_query-len">453
</ns2:Iteration_query-len>
<ns2:Iteration_hits xsi:type="ns2:Iteration_hitsType">
<ns2:Hit xsi:type="ns2:HitType">
<ns2:Hit_num xsi:type="ns2:Hit_num">1</ns2:Hit_num>
<ns2:Hit_id xsi:type="ns2:Hit_id">sp|P00352|AL1A1_HUMAN</ns2:Hit_id>
<ns2:Hit_def xsi:type="ns2:Hit_def">Retinal dehydrogenase 1 OS=Homo
sapiens GN=ALDH1A1 PE=1 SV=2</ns2:Hit_def>
<ns2:Hit_accession xsi:type="ns2:Hit_accession">P00352
</ns2:Hit_accession>
<ns2:Hit_len xsi:type="ns2:Hit_len">501</ns2:Hit_len>
<ns2:Hit_hsps xsi:type="ns2:Hit_hspsType">
<ns2:Hsp xsi:type="ns2:HspType">
<ns2:Hsp_num xsi:type="ns2:Hsp_num">1</ns2:Hsp_num>
<ns2:Hsp_bit-score xsi:type="ns2:Hsp_bit-score">938.332
</ns2:Hsp_bit-score>
<ns2:Hsp_score xsi:type="ns2:Hsp_score">2424</ns2:Hsp_score>
<ns2:Hsp_evalue xsi:type="ns2:Hsp_evalue">0</ns2:Hsp_evalue>
<ns2:Hsp_query-from xsi:type="ns2:Hsp_query-from">1
</ns2:Hsp_query-from>
<ns2:Hsp_query-to xsi:type="ns2:Hsp_query-to">453
</ns2:Hsp_query-to>
<ns2:Hsp_hit-from xsi:type="ns2:Hsp_hit-from">1</ns2:Hsp_hit-from>
<ns2:Hsp_hit-to xsi:type="ns2:Hsp_hit-to">453</ns2:Hsp_hit-to>
<ns2:Hsp_query-frame xsi:type="ns2:Hsp_query-frame">1
</ns2:Hsp_query-frame>
<ns2:Hsp_hit-frame xsi:type="ns2:Hsp_hit-frame">1
</ns2:Hsp_hit-frame>
<ns2:Hsp_identity xsi:type="ns2:Hsp_identity">453
</ns2:Hsp_identity>
<ns2:Hsp_positive xsi:type="ns2:Hsp_positive">453
</ns2:Hsp_positive>
<ns2:Hsp_align-len xsi:type="ns2:Hsp_align-len">453
</ns2:Hsp_align-len>
<ns2:Hsp_qseq xsi:type="ns2:Hsp_qseq">MSSSGTPDLPVLLTDLKIQYTKIFINNEWHDSVSGKKFPVFNPATEEELCQVEEGDKEDVDKAVKAARQAFQIGSPWRTMDASERGRLLYKLADLIERDRLLLATMESMNGGKLYSNAYLNDLAGCIKTLRYCAGWADKIQGRTIPIDGNFFTYTRHEPIGVCGQIIPWNFPLVMLIWKIGPALSCGNTVVVKPAEQTPLTALHVASLIKEAGFPPGVVNIVPGYGPTAGAAISSHMDIDKVAFTGSTEVGKLIKEAAGKSNLKRVTLELGGKSPCIVLADADLDNAVEFAHHGVFYHQGQCCIAASRIFVEESIYDEFVRRSVERAKKYILGNPLTPGVTQGPQIDKEQYDKILDLIESGKKEGAKLECGGGPWGNKGYFVQPTVFSNVTDEMRIAKEEIFGPVQQIMKFKSLDDVIKRANNTFYGLSAGVFTKDIDKAITISSALQAGTVW
</ns2:Hsp_qseq>
<ns2:Hsp_hseq xsi:type="ns2:Hsp_hseq">MSSSGTPDLPVLLTDLKIQYTKIFINNEWHDSVSGKKFPVFNPATEEELCQVEEGDKEDVDKAVKAARQAFQIGSPWRTMDASERGRLLYKLADLIERDRLLLATMESMNGGKLYSNAYLNDLAGCIKTLRYCAGWADKIQGRTIPIDGNFFTYTRHEPIGVCGQIIPWNFPLVMLIWKIGPALSCGNTVVVKPAEQTPLTALHVASLIKEAGFPPGVVNIVPGYGPTAGAAISSHMDIDKVAFTGSTEVGKLIKEAAGKSNLKRVTLELGGKSPCIVLADADLDNAVEFAHHGVFYHQGQCCIAASRIFVEESIYDEFVRRSVERAKKYILGNPLTPGVTQGPQIDKEQYDKILDLIESGKKEGAKLECGGGPWGNKGYFVQPTVFSNVTDEMRIAKEEIFGPVQQIMKFKSLDDVIKRANNTFYGLSAGVFTKDIDKAITISSALQAGTVW
</ns2:Hsp_hseq>
<ns2:Hsp_midline xsi:type="ns2:Hsp_midline">MSSSGTPDLPVLLTDLKIQYTKIFINNEWHDSVSGKKFPVFNPATEEELCQVEEGDKEDVDKAVKAARQAFQIGSPWRTMDASERGRLLYKLADLIERDRLLLATMESMNGGKLYSNAYLNDLAGCIKTLRYCAGWADKIQGRTIPIDGNFFTYTRHEPIGVCGQIIPWNFPLVMLIWKIGPALSCGNTVVVKPAEQTPLTALHVASLIKEAGFPPGVVNIVPGYGPTAGAAISSHMDIDKVAFTGSTEVGKLIKEAAGKSNLKRVTLELGGKSPCIVLADADLDNAVEFAHHGVFYHQGQCCIAASRIFVEESIYDEFVRRSVERAKKYILGNPLTPGVTQGPQIDKEQYDKILDLIESGKKEGAKLECGGGPWGNKGYFVQPTVFSNVTDEMRIAKEEIFGPVQQIMKFKSLDDVIKRANNTFYGLSAGVFTKDIDKAITISSALQAGTVW
</ns2:Hsp_midline>
</ns2:Hsp>
</ns2:Hit_hsps>
</ns2:Hit>
<ns2:Hit xsi:type="ns2:HitType">
<ns2:Hit_num xsi:type="ns2:Hit_num">2</ns2:Hit_num>
<ns2:Hit_id xsi:type="ns2:Hit_id">sp|Q8HYE4|AL1A1_MACFA</ns2:Hit_id>
<ns2:Hit_def xsi:type="ns2:Hit_def">Retinal dehydrogenase 1 OS=Macaca
fascicularis GN=ALDH1A1 PE=2 SV=3</ns2:Hit_def>
<ns2:Hit_accession xsi:type="ns2:Hit_accession">Q8HYE4
</ns2:Hit_accession>
<ns2:Hit_len xsi:type="ns2:Hit_len">501</ns2:Hit_len>
<ns2:Hit_hsps xsi:type="ns2:Hit_hspsType">
<ns2:Hsp xsi:type="ns2:HspType">
<ns2:Hsp_num xsi:type="ns2:Hsp_num">1</ns2:Hsp_num>
<ns2:Hsp_bit-score xsi:type="ns2:Hsp_bit-score">927.161
</ns2:Hsp_bit-score>
<ns2:Hsp_score xsi:type="ns2:Hsp_score">2395</ns2:Hsp_score>
<ns2:Hsp_evalue xsi:type="ns2:Hsp_evalue">0</ns2:Hsp_evalue>
<ns2:Hsp_query-from xsi:type="ns2:Hsp_query-from">1
</ns2:Hsp_query-from>
<ns2:Hsp_query-to xsi:type="ns2:Hsp_query-to">453
</ns2:Hsp_query-to>
<ns2:Hsp_hit-from xsi:type="ns2:Hsp_hit-from">1</ns2:Hsp_hit-from>
<ns2:Hsp_hit-to xsi:type="ns2:Hsp_hit-to">453</ns2:Hsp_hit-to>
<ns2:Hsp_query-frame xsi:type="ns2:Hsp_query-frame">1
</ns2:Hsp_query-frame>
<ns2:Hsp_hit-frame xsi:type="ns2:Hsp_hit-frame">1
</ns2:Hsp_hit-frame>
<ns2:Hsp_identity xsi:type="ns2:Hsp_identity">447
</ns2:Hsp_identity>
<ns2:Hsp_positive xsi:type="ns2:Hsp_positive">448
</ns2:Hsp_positive>
<ns2:Hsp_align-len xsi:type="ns2:Hsp_align-len">453
</ns2:Hsp_align-len>
<ns2:Hsp_qseq xsi:type="ns2:Hsp_qseq">MSSSGTPDLPVLLTDLKIQYTKIFINNEWHDSVSGKKFPVFNPATEEELCQVEEGDKEDVDKAVKAARQAFQIGSPWRTMDASERGRLLYKLADLIERDRLLLATMESMNGGKLYSNAYLNDLAGCIKTLRYCAGWADKIQGRTIPIDGNFFTYTRHEPIGVCGQIIPWNFPLVMLIWKIGPALSCGNTVVVKPAEQTPLTALHVASLIKEAGFPPGVVNIVPGYGPTAGAAISSHMDIDKVAFTGSTEVGKLIKEAAGKSNLKRVTLELGGKSPCIVLADADLDNAVEFAHHGVFYHQGQCCIAASRIFVEESIYDEFVRRSVERAKKYILGNPLTPGVTQGPQIDKEQYDKILDLIESGKKEGAKLECGGGPWGNKGYFVQPTVFSNVTDEMRIAKEEIFGPVQQIMKFKSLDDVIKRANNTFYGLSAGVFTKDIDKAITISSALQAGTVW
</ns2:Hsp_qseq>
<ns2:Hsp_hseq xsi:type="ns2:Hsp_hseq">MSSSGTSDLPVLPTDLKIQYTKIFINNEWHDSVSGKKFPVFNPATEEELCQVEEGDKADVDKAVKAARQAFQIGSPWRTMDASERGRLLYKLADLIERDRLLLATMESMNGGKLYSNAYLNDLAGCIKTLRYCAGWADKIQGRTIPIDGNFFTYTRHEPIGVCGQIIPWNFPLVMLIWKIGPALSCGNTVVVKPAEQTPLTALHVASLIKEAGFPPGVVNIVPGYGPTAGAAISSHMDIDKVAFTGSTEVGKLIKEAAGKSNLKRVTLELGGKSPCIVLADADLDNAVEFAHHGVFYHQGQCCIAASRIFVEESIYDEFVRRSVERAKKYILGNPLTPGATQGPQIDKEQYDKILDLIESGKKEGAKLECGGGPWGNKGYFVQPTVFSNVTDEMRIAKEEIFGPVQQIMKFKSLDDVIKRANNTFYGLSAGVFTNDIDKAVTISSALQAGTVW
</ns2:Hsp_hseq>
<ns2:Hsp_midline xsi:type="ns2:Hsp_midline">MSSSGT DLPVL
TDLKIQYTKIFINNEWHDSVSGKKFPVFNPATEEELCQVEEGDK
DVDKAVKAARQAFQIGSPWRTMDASERGRLLYKLADLIERDRLLLATMESMNGGKLYSNAYLNDLAGCIKTLRYCAGWADKIQGRTIPIDGNFFTYTRHEPIGVCGQIIPWNFPLVMLIWKIGPALSCGNTVVVKPAEQTPLTALHVASLIKEAGFPPGVVNIVPGYGPTAGAAISSHMDIDKVAFTGSTEVGKLIKEAAGKSNLKRVTLELGGKSPCIVLADADLDNAVEFAHHGVFYHQGQCCIAASRIFVEESIYDEFVRRSVERAKKYILGNPLTPG
TQGPQIDKEQYDKILDLIESGKKEGAKLECGGGPWGNKGYFVQPTVFSNVTDEMRIAKEEIFGPVQQIMKFKSLDDVIKRANNTFYGLSAGVFT
DIDKA+TISSALQAGTVW</ns2:Hsp_midline>
</ns2:Hsp>
</ns2:Hit_hsps>
</ns2:Hit>
<ns2:Hit xsi:type="ns2:HitType">
<ns2:Hit_num xsi:type="ns2:Hit_num">3</ns2:Hit_num>
<ns2:Hit_id xsi:type="ns2:Hit_id">sp|P51977|AL1A1_SHEEP</ns2:Hit_id>
<ns2:Hit_def xsi:type="ns2:Hit_def">Retinal dehydrogenase 1 OS=Ovis
aries GN=ALDH1A1 PE=1 SV=2</ns2:Hit_def>
<ns2:Hit_accession xsi:type="ns2:Hit_accession">P51977
</ns2:Hit_accession>
<ns2:Hit_len xsi:type="ns2:Hit_len">501</ns2:Hit_len>
<ns2:Hit_hsps xsi:type="ns2:Hit_hspsType">
<ns2:Hsp xsi:type="ns2:HspType">
<ns2:Hsp_num xsi:type="ns2:Hsp_num">1</ns2:Hsp_num>
<ns2:Hsp_bit-score xsi:type="ns2:Hsp_bit-score">877.47
</ns2:Hsp_bit-score>
<ns2:Hsp_score xsi:type="ns2:Hsp_score">2266</ns2:Hsp_score>
<ns2:Hsp_evalue xsi:type="ns2:Hsp_evalue">0</ns2:Hsp_evalue>
<ns2:Hsp_query-from xsi:type="ns2:Hsp_query-from">1
</ns2:Hsp_query-from>
<ns2:Hsp_query-to xsi:type="ns2:Hsp_query-to">453
</ns2:Hsp_query-to>
<ns2:Hsp_hit-from xsi:type="ns2:Hsp_hit-from">1</ns2:Hsp_hit-from>
<ns2:Hsp_hit-to xsi:type="ns2:Hsp_hit-to">453</ns2:Hsp_hit-to>
<ns2:Hsp_query-frame xsi:type="ns2:Hsp_query-frame">1
</ns2:Hsp_query-frame>
<ns2:Hsp_hit-frame xsi:type="ns2:Hsp_hit-frame">1
</ns2:Hsp_hit-frame>
<ns2:Hsp_identity xsi:type="ns2:Hsp_identity">413
</ns2:Hsp_identity>
<ns2:Hsp_positive xsi:type="ns2:Hsp_positive">438
</ns2:Hsp_positive>
<ns2:Hsp_align-len xsi:type="ns2:Hsp_align-len">453
</ns2:Hsp_align-len>
<ns2:Hsp_qseq xsi:type="ns2:Hsp_qseq">MSSSGTPDLPVLLTDLKIQYTKIFINNEWHDSVSGKKFPVFNPATEEELCQVEEGDKEDVDKAVKAARQAFQIGSPWRTMDASERGRLLYKLADLIERDRLLLATMESMNGGKLYSNAYLNDLAGCIKTLRYCAGWADKIQGRTIPIDGNFFTYTRHEPIGVCGQIIPWNFPLVMLIWKIGPALSCGNTVVVKPAEQTPLTALHVASLIKEAGFPPGVVNIVPGYGPTAGAAISSHMDIDKVAFTGSTEVGKLIKEAAGKSNLKRVTLELGGKSPCIVLADADLDNAVEFAHHGVFYHQGQCCIAASRIFVEESIYDEFVRRSVERAKKYILGNPLTPGVTQGPQIDKEQYDKILDLIESGKKEGAKLECGGGPWGNKGYFVQPTVFSNVTDEMRIAKEEIFGPVQQIMKFKSLDDVIKRANNTFYGLSAGVFTKDIDKAITISSALQAGTVW
</ns2:Hsp_qseq>
<ns2:Hsp_hseq xsi:type="ns2:Hsp_hseq">MSSSAMPDVPAPLTNLQFKYTKIFINNEWHSSVSGKKFPVFNPATEEKLCEVEEGDKEDVDKAVKAARQAFQIGSPWRTMDASERGRLLNKLADLIERDRLLLATMEAMNGGKLFSNAYLMDLGGCIKTLRYCAGWADKIQGRTIPMDGNFFTYTRSEPVGVCGQIIPWNFPLLMFLWKIGPALSCGNTVVVKPAEQTPLTALHMGSLIKEAGFPPGVVNIVPGYGPTAGAAISSHMDVDKVAFTGSTEVGKLIKEAAGKSNLKRVSLELGGKSPCIVFADADLDNAVEFAHQGVFYHQGQCCIAASRLFVEESIYDEFVRRSVERAKKYVLGNPLTPGVSQGPQIDKEQYEKILDLIESGKKEGAKLECGGGPWGNKGYFIQPTVFSDVTDDMRIAKEEIFGPVQQIMKFKSLDDVIKRANNTFYGLSAGIFTNDIDKAITVSSALQSGTVW
</ns2:Hsp_hseq>
<ns2:Hsp_midline xsi:type="ns2:Hsp_midline">MSSS PD+P LT+L+
+YTKIFINNEWH
SVSGKKFPVFNPATEE+LC+VEEGDKEDVDKAVKAARQAFQIGSPWRTMDASERGRLL
KLADLIERDRLLLATME+MNGGKL+SNAYL DL
GCIKTLRYCAGWADKIQGRTIP+DGNFFTYTR EP+GVCGQIIPWNFPL+M
+WKIGPALSCGNTVVVKPAEQTPLTALH+
SLIKEAGFPPGVVNIVPGYGPTAGAAISSHMD+DKVAFTGSTEVGKLIKEAAGKSNLKRV+LELGGKSPCIV
ADADLDNAVEFAH
GVFYHQGQCCIAASR+FVEESIYDEFVRRSVERAKKY+LGNPLTPGV+QGPQIDKEQY+KILDLIESGKKEGAKLECGGGPWGNKGYF+QPTVFS+VTD+MRIAKEEIFGPVQQIMKFKSLDDVIKRANNTFYGLSAG+FT
DIDKAIT+SSALQ+GTVW</ns2:Hsp_midline>
</ns2:Hsp>
</ns2:Hit_hsps>
</ns2:Hit>
<ns2:Hit xsi:type="ns2:HitType">
<ns2:Hit_num xsi:type="ns2:Hit_num">4</ns2:Hit_num>
<ns2:Hit_id xsi:type="ns2:Hit_id">sp|P48644|AL1A1_BOVIN</ns2:Hit_id>
<ns2:Hit_def xsi:type="ns2:Hit_def">Retinal dehydrogenase 1 OS=Bos
taurus GN=ALDH1A1 PE=2 SV=3</ns2:Hit_def>
<ns2:Hit_accession xsi:type="ns2:Hit_accession">P48644
</ns2:Hit_accession>
<ns2:Hit_len xsi:type="ns2:Hit_len">501</ns2:Hit_len>
<ns2:Hit_hsps xsi:type="ns2:Hit_hspsType">
<ns2:Hsp xsi:type="ns2:HspType">
<ns2:Hsp_num xsi:type="ns2:Hsp_num">1</ns2:Hsp_num>
<ns2:Hsp_bit-score xsi:type="ns2:Hsp_bit-score">875.159
</ns2:Hsp_bit-score>
<ns2:Hsp_score xsi:type="ns2:Hsp_score">2260</ns2:Hsp_score>
<ns2:Hsp_evalue xsi:type="ns2:Hsp_evalue">0</ns2:Hsp_evalue>
<ns2:Hsp_query-from xsi:type="ns2:Hsp_query-from">1
</ns2:Hsp_query-from>
<ns2:Hsp_query-to xsi:type="ns2:Hsp_query-to">453
</ns2:Hsp_query-to>
<ns2:Hsp_hit-from xsi:type="ns2:Hsp_hit-from">1</ns2:Hsp_hit-from>
<ns2:Hsp_hit-to xsi:type="ns2:Hsp_hit-to">453</ns2:Hsp_hit-to>
<ns2:Hsp_query-frame xsi:type="ns2:Hsp_query-frame">1
</ns2:Hsp_query-frame>
<ns2:Hsp_hit-frame xsi:type="ns2:Hsp_hit-frame">1
</ns2:Hsp_hit-frame>
<ns2:Hsp_identity xsi:type="ns2:Hsp_identity">412
</ns2:Hsp_identity>
<ns2:Hsp_positive xsi:type="ns2:Hsp_positive">437
</ns2:Hsp_positive>
<ns2:Hsp_align-len xsi:type="ns2:Hsp_align-len">453
</ns2:Hsp_align-len>
<ns2:Hsp_qseq xsi:type="ns2:Hsp_qseq">MSSSGTPDLPVLLTDLKIQYTKIFINNEWHDSVSGKKFPVFNPATEEELCQVEEGDKEDVDKAVKAARQAFQIGSPWRTMDASERGRLLYKLADLIERDRLLLATMESMNGGKLYSNAYLNDLAGCIKTLRYCAGWADKIQGRTIPIDGNFFTYTRHEPIGVCGQIIPWNFPLVMLIWKIGPALSCGNTVVVKPAEQTPLTALHVASLIKEAGFPPGVVNIVPGYGPTAGAAISSHMDIDKVAFTGSTEVGKLIKEAAGKSNLKRVTLELGGKSPCIVLADADLDNAVEFAHHGVFYHQGQCCIAASRIFVEESIYDEFVRRSVERAKKYILGNPLTPGVTQGPQIDKEQYDKILDLIESGKKEGAKLECGGGPWGNKGYFVQPTVFSNVTDEMRIAKEEIFGPVQQIMKFKSLDDVIKRANNTFYGLSAGVFTKDIDKAITISSALQAGTVW
</ns2:Hsp_qseq>
<ns2:Hsp_hseq xsi:type="ns2:Hsp_hseq">MSSSAMPDVPAPLTNLQFKYTKIFINNEWHSSVSGKKFPVFNPATEEKLCEVEEGDKEDVDKAVKAARQAFQIGSPWRTMDASERGRLLNKLADLIERDHLLLATMEAMNGGKLFSNAYLMDLGGCIKTLRYCAGWADKIQGRTIPMDGNFFTYTRSEPVGVCGQIIPWNFPLLMFLWKIGPALSCGNTVVVKPAEQTPLTALHMGSLIKEAGFPPGVVNIVPGYGPTAGAAISSHMDVDKVAFTGSTEVGKLIKEAAGKSNLKRVSLELGGKSPCIVFADADLDNAVEFAHQGVFYHQGQCCIAASRLFVEESIYDEFVRRSVERAKKYVLGNPLTPGVSQGPQIDKEQYEKILDLIESGKKEGAKLECGGGPWGNKGYFIQPTVFSDVTDDMRIAKEEIFGPVQQIMKFKSLDDVIKRANNTFYGLSAGIFTNDIDKAITVSSALQSGTVW
</ns2:Hsp_hseq>
<ns2:Hsp_midline xsi:type="ns2:Hsp_midline">MSSS PD+P LT+L+
+YTKIFINNEWH
SVSGKKFPVFNPATEE+LC+VEEGDKEDVDKAVKAARQAFQIGSPWRTMDASERGRLL
KLADLIERD LLLATME+MNGGKL+SNAYL DL
GCIKTLRYCAGWADKIQGRTIP+DGNFFTYTR EP+GVCGQIIPWNFPL+M
+WKIGPALSCGNTVVVKPAEQTPLTALH+
SLIKEAGFPPGVVNIVPGYGPTAGAAISSHMD+DKVAFTGSTEVGKLIKEAAGKSNLKRV+LELGGKSPCIV
ADADLDNAVEFAH
GVFYHQGQCCIAASR+FVEESIYDEFVRRSVERAKKY+LGNPLTPGV+QGPQIDKEQY+KILDLIESGKKEGAKLECGGGPWGNKGYF+QPTVFS+VTD+MRIAKEEIFGPVQQIMKFKSLDDVIKRANNTFYGLSAG+FT
DIDKAIT+SSALQ+GTVW</ns2:Hsp_midline>
</ns2:Hsp>
</ns2:Hit_hsps>
</ns2:Hit>
<ns2:Hit xsi:type="ns2:HitType">
<ns2:Hit_num xsi:type="ns2:Hit_num">5</ns2:Hit_num>
<ns2:Hit_id xsi:type="ns2:Hit_id">sp|P15437|AL1A1_HORSE</ns2:Hit_id>
<ns2:Hit_def xsi:type="ns2:Hit_def">Retinal dehydrogenase 1 OS=Equus
caballus GN=ALDH1A1 PE=1 SV=1</ns2:Hit_def>
<ns2:Hit_accession xsi:type="ns2:Hit_accession">P15437
</ns2:Hit_accession>
<ns2:Hit_len xsi:type="ns2:Hit_len">500</ns2:Hit_len>
<ns2:Hit_hsps xsi:type="ns2:Hit_hspsType">
<ns2:Hsp xsi:type="ns2:HspType">
<ns2:Hsp_num xsi:type="ns2:Hsp_num">1</ns2:Hsp_num>
<ns2:Hsp_bit-score xsi:type="ns2:Hsp_bit-score">872.078
</ns2:Hsp_bit-score>
<ns2:Hsp_score xsi:type="ns2:Hsp_score">2252</ns2:Hsp_score>
<ns2:Hsp_evalue xsi:type="ns2:Hsp_evalue">0</ns2:Hsp_evalue>
<ns2:Hsp_query-from xsi:type="ns2:Hsp_query-from">2
</ns2:Hsp_query-from>
<ns2:Hsp_query-to xsi:type="ns2:Hsp_query-to">453
</ns2:Hsp_query-to>
<ns2:Hsp_hit-from xsi:type="ns2:Hsp_hit-from">1</ns2:Hsp_hit-from>
<ns2:Hsp_hit-to xsi:type="ns2:Hsp_hit-to">452</ns2:Hsp_hit-to>
<ns2:Hsp_query-frame xsi:type="ns2:Hsp_query-frame">1
</ns2:Hsp_query-frame>
<ns2:Hsp_hit-frame xsi:type="ns2:Hsp_hit-frame">1
</ns2:Hsp_hit-frame>
<ns2:Hsp_identity xsi:type="ns2:Hsp_identity">410
</ns2:Hsp_identity>
<ns2:Hsp_positive xsi:type="ns2:Hsp_positive">435
</ns2:Hsp_positive>
<ns2:Hsp_align-len xsi:type="ns2:Hsp_align-len">452
</ns2:Hsp_align-len>
<ns2:Hsp_qseq xsi:type="ns2:Hsp_qseq">SSSGTPDLPVLLTDLKIQYTKIFINNEWHDSVSGKKFPVFNPATEEELCQVEEGDKEDVDKAVKAARQAFQIGSPWRTMDASERGRLLYKLADLIERDRLLLATMESMNGGKLYSNAYLNDLAGCIKTLRYCAGWADKIQGRTIPIDGNFFTYTRHEPIGVCGQIIPWNFPLVMLIWKIGPALSCGNTVVVKPAEQTPLTALHVASLIKEAGFPPGVVNIVPGYGPTAGAAISSHMDIDKVAFTGSTEVGKLIKEAAGKSNLKRVTLELGGKSPCIVLADADLDNAVEFAHHGVFYHQGQCCIAASRIFVEESIYDEFVRRSVERAKKYILGNPLTPGVTQGPQIDKEQYDKILDLIESGKKEGAKLECGGGPWGNKGYFVQPTVFSNVTDEMRIAKEEIFGPVQQIMKFKSLDDVIKRANNTFYGLSAGVFTKDIDKAITISSALQAGTVW
</ns2:Hsp_qseq>
<ns2:Hsp_hseq xsi:type="ns2:Hsp_hseq">SSSGTPDLPVLLTDLKFQYTKIFINNEWHDSVSGKKFPVFNPATEEKLCEVEEGDKEDVNKAVAAARQAFQIGSPWRTMDASERGRLLYKLADLVERDRLILATMESMNGGKLFSNAYLMDLGGCLKTLRYCAGWADKIQGRTIPSDGNFFTYTRHEPVGVCGQILPWNFPLLMFLWKIAPALSCGNTVVVKPAEQTPLSALHVATLIKEAGFPPGVVNIVPGYGPTAGAAISSHMDIDKVAFTGSTEVGKLIKEAAGKSNLKRVTLELGGKSPFIVFADADLETALEVTHQALFYHQGQCCVAASRLFVEESIYDEFVRRSVERAKKYVLGNPLTPGVSQGPQIDKEQYDKILDLIESGKKEGAKLECGGGPWGNKGYFIQPTVFSNVSDEMRIAKEEIFGPVQQIMKFKSLDDVIKRANNTTYGLFAGSFTKDLDKAITVSAALQAGTVW
</ns2:Hsp_hseq>
<ns2:Hsp_midline xsi:type="ns2:Hsp_midline">SSSGTPDLPVLLTDLK
QYTKIFINNEWHDSVSGKKFPVFNPATEE+LC+VEEGDKEDV+KAV
AARQAFQIGSPWRTMDASERGRLLYKLADL+ERDRL+LATMESMNGGKL+SNAYL DL
GC+KTLRYCAGWADKIQGRTIP DGNFFTYTRHEP+GVCGQI+PWNFPL+M +WKI
PALSCGNTVVVKPAEQTPL+ALHVA+LIKEAGFPPGVVNIVPGYGPTAGAAISSHMDIDKVAFTGSTEVGKLIKEAAGKSNLKRVTLELGGKSP
IV ADADL+ A+E H
+FYHQGQCC+AASR+FVEESIYDEFVRRSVERAKKY+LGNPLTPGV+QGPQIDKEQYDKILDLIESGKKEGAKLECGGGPWGNKGYF+QPTVFSNV+DEMRIAKEEIFGPVQQIMKFKSLDDVIKRANNT
YGL AG FTKD+DKAIT+S+ALQAGTVW</ns2:Hsp_midline>
</ns2:Hsp>
</ns2:Hit_hsps>
</ns2:Hit>
</ns2:Iteration_hits>
<ns2:Iteration_stat xsi:type="ns2:Iteration_statType">
<ns2:Statistics xsi:type="ns2:StatisticsType">
<ns2:Statistics_db-num xsi:type="ns2:Statistics_db-num">516081
</ns2:Statistics_db-num>
<ns2:Statistics_db-len xsi:type="ns2:Statistics_db-len">181677051
</ns2:Statistics_db-len>
<ns2:Statistics_hsp-len xsi:type="ns2:Statistics_hsp-len">120
</ns2:Statistics_hsp-len>
<ns2:Statistics_eff-space xsi:type="ns2:Statistics_eff-space">3.98759e+10
</ns2:Statistics_eff-space>
<ns2:Statistics_kappa xsi:type="ns2:Statistics_kappa">0.041
</ns2:Statistics_kappa>
<ns2:Statistics_lambda xsi:type="ns2:Statistics_lambda">0.267
</ns2:Statistics_lambda>
<ns2:Statistics_entropy xsi:type="ns2:Statistics_entropy">0.14
</ns2:Statistics_entropy>
</ns2:Statistics>
</ns2:Iteration_stat>
</ns2:Iteration>
</ns2:BlastOutput_iterations>
</BlastOutput>
/BlastOutput/ns2:BlastOutput_iterations/ns2:Iteration/ns2:Iteration_hits/ns2:Hit/ns2:Hit_accession
ns2
http://www.bccs.uni.no/schema/BlastOutput
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokegetStatusjobIdgetResultjobIdrunBlastpquerySequencerunBlastpalignmentNumberrunBlastpdatabaseURIrunBlastpexpectValuerunBlastpgapOpenPenaltyrunBlastpmatrixrunBlastpwordsizerunBlastpgapExtensionPenaltygetAccessionIdsxml_textGetResult_output_BlastOutputGetResult_output_DbStatusgetStatus_statusgetAccessionIds_nodelist
6b76799b-7627-482d-9894-44dc3d75edb1
2010-10-06 14:07:52.708 BST
7fce1d69-e337-4de8-b187-d58086e13c0a
2010-10-06 09:50:24.702 BST
b4d97978-ad16-4cfb-ad8b-201e89b86dcb
2010-10-06 10:07:16.71 BST
An attempt to implement in the BioXSD workflow described by Kalas et al., (2010)
2010-10-12 09:14:58.147 BST
e1ff5573-f509-444d-b00b-7a5f318d5933
2010-10-06 09:20:58.478 BST
38c33071-053a-46a4-8d4f-05fe6d3992e9
2010-10-06 10:03:37.548 BST
An attempt to implement in the BioXSD workflow described in
2010-10-12 09:13:39.826 BST
1e91ac43-cd66-46f4-8d84-4c6757d055dc
2010-10-06 10:45:41.86 BST
e1b8df9c-8ea9-4095-9db4-fc0d849d5a30
2010-10-06 09:38:25.108 BST
502a4a72-2579-48d3-b4a5-d9df7651204f
2010-10-06 09:19:23.240 BST
56e01b49-6a46-4461-99d0-f61877d731d5
2010-10-06 10:43:14.782 BST
4538b068-1e0d-4c85-9674-299a74379d17
2010-10-06 09:35:30.542 BST
ae5064aa-f335-41bb-aec3-85a9240f9bef
2010-10-06 10:17:44.554 BST
Peter Li
2010-10-12 09:13:11.922 BST
BioXSD example workflow
2010-10-12 09:13:23.578 BST
An attempt to implement in the BioXSD workflow described by Kalas et al., (2010) Bioinformatics 26:i540-6. The workflow only calls one BioXSD web service (BLAST) since the second service (ClustalW) in the example workflow is currently down.
2010-10-12 09:16:20.209 BST
a452c1cf-5c7d-46b2-900c-850698e8740c
2010-10-06 10:01:43.137 BST
4758c24f-7512-4963-a3a6-df76dd8aa6a2
2010-10-06 09:51:39.370 BST
624a61a2-3eb9-46a3-9f05-a7a738d48015
2010-10-12 09:16:22.89 BST
ee8514ff-2f75-43b2-93da-8ddecbf88589
2010-10-06 10:28:48.933 BST
903afd44-c128-4d80-9fb4-3a3d3e922a81
2010-10-06 09:35:55.189 BST
656a4f86-04cb-40f7-ab78-718d5e50e4a3
2010-10-06 10:06:32.738 BST
95a86559-136c-4823-8fa6-80d62c125cf6
2010-10-06 09:59:55.554 BST
Workflow6jobId00statusGetStatusparameters0parameters00net.sf.taverna.t2.activitieswsdl-activity1.2net.sf.taverna.t2.activities.wsdl.WSDLActivity
http://www.bccs.uni.no/services/blastws/BlastPublic_2_2_21_ws0.wsdl
GetStatus
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeGetStatus_inputJobId0output00net.sf.taverna.t2.activitieswsdl-activity1.2net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLInputSplitterActivity
<s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="GetStatus" name="parameters" qname="{http://www.bccs.uni.no/service/Blast/}GetStatus"><s:elements><s:basetype optional="false" unbounded="false" typename="string" name="JobId" qname="{http://esysbio.bccs.uni.no/schema/JobSchema}JobIdType>JobId" /></s:elements></s:complextype></s:extensions>
false
JobId
0
'text/plain'
0
output
0
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net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
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net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeGetStatus_outputinput0Status00net.sf.taverna.t2.activitieswsdl-activity1.2net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLOutputSplitterActivity
<s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="GetStatusResponse" name="parameters" qname="{http://www.bccs.uni.no/service/Blast/}GetStatusResponse"><s:elements><s:basetype optional="false" unbounded="false" typename="string" name="Status" qname=">GetStatusResponse>Status" /></s:elements></s:complextype></s:extensions>
java.lang.String
false
input
0
'text/xml'
0
Status
0
'text/plain'
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
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0
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeGetStatusparametersGetStatus_inputJobIdGetStatus_outputinputstatus
e07bcd29-c903-487e-98a3-f3883d3e5d99
2010-10-06 10:04:57.656 BST
0f1b6ebb-f2c9-442a-b8cf-e42b242f43f9
2010-10-06 10:03:56.978 BST
Workflow8jobId00blastOutputdbStatusGetResultparameters0parameters00net.sf.taverna.t2.activitieswsdl-activity1.2net.sf.taverna.t2.activities.wsdl.WSDLActivity
http://www.bccs.uni.no/services/blastws/BlastPublic_2_2_21_ws0.wsdl
GetResult
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeGetResult_inputJobId0output00net.sf.taverna.t2.activitieswsdl-activity1.2net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLInputSplitterActivity
<s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="GetResult" name="parameters" qname="{http://www.bccs.uni.no/service/Blast/}GetResult"><s:elements><s:basetype optional="false" unbounded="false" typename="string" name="JobId" qname="{http://esysbio.bccs.uni.no/schema/JobSchema}JobIdType>JobId" /></s:elements></s:complextype></s:extensions>
false
JobId
0
'text/plain'
0
output
0
'text/xml'
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
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net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeGetResult_outputinput0BlastOutput00DbStatus00net.sf.taverna.t2.activitieswsdl-activity1.2net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLOutputSplitterActivity
<s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="GetResultResponse" name="parameters" qname="{http://www.bccs.uni.no/service/Blast/}GetResultResponse"><s:elements><s:complextype optional="true" unbounded="false" typename="BlastOutputType" name="BlastOutput" qname="GetResultResponseType>BlastOutput"><s:elements><s:complextype optional="false" unbounded="false" typename="BlastOutput_program" name="BlastOutput_program" qname="{http://www.bccs.uni.no/schema/BlastOutput}BlastOutputType>BlastOutput_program"><s:elements><s:basetype optional="false" unbounded="false" typename="string" name="value" qname="value" /></s:elements></s:complextype><s:complextype optional="false" unbounded="false" typename="BlastOutput_version" name="BlastOutput_version" qname="{http://www.bccs.uni.no/schema/BlastOutput}BlastOutputType>BlastOutput_version"><s:elements><s:basetype optional="false" unbounded="false" typename="string" name="value" qname="value" /></s:elements></s:complextype><s:complextype optional="false" unbounded="false" typename="BlastOutput_reference" name="BlastOutput_reference" qname="{http://www.bccs.uni.no/schema/BlastOutput}BlastOutputType>BlastOutput_reference"><s:elements><s:basetype optional="false" unbounded="false" typename="string" name="value" qname="value" /></s:elements></s:complextype><s:complextype optional="false" unbounded="false" typename="BlastOutput_db" name="BlastOutput_db" qname="{http://www.bccs.uni.no/schema/BlastOutput}BlastOutputType>BlastOutput_db"><s:elements><s:basetype optional="false" unbounded="false" typename="string" name="value" qname="value" /></s:elements></s:complextype><s:complextype optional="false" unbounded="false" typename="BlastOutput_query-ID" name="BlastOutput_query-ID" qname="{http://www.bccs.uni.no/schema/BlastOutput}BlastOutputType>BlastOutput_query-ID"><s:elements><s:basetype optional="false" unbounded="false" typename="string" name="value" qname="value" /></s:elements></s:complextype><s:complextype optional="false" unbounded="false" typename="BlastOutput_query-def" name="BlastOutput_query-def" qname="{http://www.bccs.uni.no/schema/BlastOutput}BlastOutputType>BlastOutput_query-def"><s:elements><s:basetype optional="false" unbounded="false" typename="string" name="value" qname="value" /></s:elements></s:complextype><s:complextype optional="false" unbounded="false" typename="BlastOutput_query-len" name="BlastOutput_query-len" qname="{http://www.bccs.uni.no/schema/BlastOutput}BlastOutputType>BlastOutput_query-len"><s:elements><s:basetype optional="false" unbounded="false" typename="integer" name="value" qname="value" /></s:elements></s:complextype><s:complextype optional="true" unbounded="false" typename="BlastOutput_query-seq" name="BlastOutput_query-seq" qname="{http://www.bccs.uni.no/schema/BlastOutput}BlastOutputType>BlastOutput_query-seq"><s:elements><s:basetype optional="false" unbounded="false" typename="string" name="value" qname="value" /></s:elements></s:complextype><s:complextype optional="false" unbounded="false" typename="BlastOutput_param" name="BlastOutput_param" qname="{http://www.bccs.uni.no/schema/BlastOutput}BlastOutputType>BlastOutput_param"><s:elements><s:complextype optional="false" unbounded="false" typename="Parameters" name="Parameters" qname="{http://www.bccs.uni.no/schema/BlastOutput}BlastOutput_paramType>Parameters"><s:elements><s:complextype optional="true" unbounded="false" typename="Parameters_matrix" name="Parameters_matrix" qname="{http://www.bccs.uni.no/schema/BlastOutput}ParametersType>Parameters_matrix"><s:elements /></s:complextype><s:complextype optional="false" unbounded="false" typename="Parameters_expect" name="Parameters_expect" qname="{http://www.bccs.uni.no/schema/BlastOutput}ParametersType>Parameters_expect"><s:elements><s:basetype optional="false" unbounded="false" typename="float" name="value" qname="value" /></s:elements></s:complextype><s:complextype optional="true" unbounded="false" typename="Parameters_include" name="Parameters_include" qname="{http://www.bccs.uni.no/schema/BlastOutput}ParametersType>Parameters_include"><s:elements><s:basetype optional="false" unbounded="false" typename="string" name="value" qname="value" /></s:elements></s:complextype><s:complextype optional="true" unbounded="false" typename="Parameters_sc-match" name="Parameters_sc-match" qname="{http://www.bccs.uni.no/schema/BlastOutput}ParametersType>Parameters_sc-match"><s:elements><s:basetype optional="false" unbounded="false" typename="string" name="value" qname="value" /></s:elements></s:complextype><s:complextype optional="true" unbounded="false" typename="Parameters_sc-mismatch" name="Parameters_sc-mismatch" qname="{http://www.bccs.uni.no/schema/BlastOutput}ParametersType>Parameters_sc-mismatch"><s:elements><s:basetype optional="false" unbounded="false" typename="integer" name="value" qname="value" /></s:elements></s:complextype><s:complextype 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qname="{http://www.bccs.uni.no/schema/BlastOutput}StatisticsType>Statistics_db-num"><s:elements><s:basetype optional="false" unbounded="false" typename="integer" name="value" qname="value" /></s:elements></s:complextype><s:complextype optional="false" unbounded="false" typename="Statistics_db-len" name="Statistics_db-len" qname="{http://www.bccs.uni.no/schema/BlastOutput}StatisticsType>Statistics_db-len"><s:elements><s:basetype optional="false" unbounded="false" typename="integer" name="value" qname="value" /></s:elements></s:complextype><s:complextype optional="false" unbounded="false" typename="Statistics_hsp-len" name="Statistics_hsp-len" qname="{http://www.bccs.uni.no/schema/BlastOutput}StatisticsType>Statistics_hsp-len"><s:elements><s:basetype optional="false" unbounded="false" typename="integer" name="value" qname="value" /></s:elements></s:complextype><s:complextype optional="false" unbounded="false" typename="Statistics_eff-space" name="Statistics_eff-space" qname="{http://www.bccs.uni.no/schema/BlastOutput}StatisticsType>Statistics_eff-space"><s:elements><s:basetype optional="false" unbounded="false" typename="float" name="value" qname="value" /></s:elements></s:complextype><s:complextype optional="false" unbounded="false" typename="Statistics_kappa" name="Statistics_kappa" qname="{http://www.bccs.uni.no/schema/BlastOutput}StatisticsType>Statistics_kappa"><s:elements><s:basetype optional="false" unbounded="false" typename="double" name="value" qname="value" /></s:elements></s:complextype><s:complextype optional="false" unbounded="false" typename="Statistics_lambda" name="Statistics_lambda" qname="{http://www.bccs.uni.no/schema/BlastOutput}StatisticsType>Statistics_lambda"><s:elements><s:basetype optional="false" unbounded="false" typename="double" name="value" qname="value" /></s:elements></s:complextype><s:complextype optional="false" unbounded="false" typename="Statistics_entropy" name="Statistics_entropy" qname="{http://www.bccs.uni.no/schema/BlastOutput}StatisticsType>Statistics_entropy"><s:elements><s:basetype optional="false" unbounded="false" typename="double" name="value" qname="value" /></s:elements></s:complextype></s:elements></s:complextype></s:elements></s:complextype><s:complextype optional="true" unbounded="false" typename="Iteration_message" name="Iteration_message" qname="{http://www.bccs.uni.no/schema/BlastOutput}IterationType>Iteration_message"><s:elements><s:basetype optional="false" unbounded="false" typename="string" name="value" qname="value" /></s:elements></s:complextype></s:elements></s:complextype></s:elementtype></s:arraytype></s:elements></s:complextype><s:complextype optional="true" unbounded="false" typename="BlastOutput_mbstat" name="BlastOutput_mbstat" qname="{http://www.bccs.uni.no/schema/BlastOutput}BlastOutputType>BlastOutput_mbstat"><s:elements><s:complextype optional="false" unbounded="false" typename="Statistics" name="Statistics" qname="{http://www.bccs.uni.no/schema/BlastOutput}BlastOutput_mbstatType>Statistics"><s:elements><s:complextype id="{http://www.bccs.uni.no/schema/BlastOutput}StatisticsType>Statistics_db-num" optional="false" unbounded="false" typename="Statistics_db-num" name="Statistics_db-num" /><s:complextype id="{http://www.bccs.uni.no/schema/BlastOutput}StatisticsType>Statistics_db-len" optional="false" unbounded="false" typename="Statistics_db-len" name="Statistics_db-len" /><s:complextype id="{http://www.bccs.uni.no/schema/BlastOutput}StatisticsType>Statistics_hsp-len" optional="false" unbounded="false" typename="Statistics_hsp-len" name="Statistics_hsp-len" /><s:complextype id="{http://www.bccs.uni.no/schema/BlastOutput}StatisticsType>Statistics_eff-space" optional="false" unbounded="false" typename="Statistics_eff-space" name="Statistics_eff-space" /><s:complextype id="{http://www.bccs.uni.no/schema/BlastOutput}StatisticsType>Statistics_kappa" optional="false" unbounded="false" typename="Statistics_kappa" name="Statistics_kappa" /><s:complextype id="{http://www.bccs.uni.no/schema/BlastOutput}StatisticsType>Statistics_lambda" optional="false" unbounded="false" typename="Statistics_lambda" name="Statistics_lambda" /><s:complextype id="{http://www.bccs.uni.no/schema/BlastOutput}StatisticsType>Statistics_entropy" optional="false" unbounded="false" typename="Statistics_entropy" name="Statistics_entropy" /></s:elements></s:complextype></s:elements></s:complextype></s:elements></s:complextype><s:basetype optional="true" unbounded="false" typename="string" name="DbStatus" qname="GetResultResponseType>DbStatus" /></s:elements></s:complextype></s:extensions>
java.lang.String
false
input
0
'text/xml'
0
BlastOutput
0
'text/xml'
0
DbStatus
0
'text/plain'
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeGetResultparametersGetResult_inputJobIdGetResult_outputinputblastOutputdbStatus
20c09db8-9ee6-4ceb-bf00-10dee505f520
2010-10-06 10:27:24.60 BST
Workflow15querySequence11
<xml-fragment xmlns:bx="http://bioxsd.org/BioXSD-0.4"><bx:sequence>MSSSGTPDLPVLLTDLKIQYTKIFINNEWHDSVSGKKFPVFNPATEEELCQVEEGDKEDVDKAVKAARQAFQIGSPWRTMDASERGRLLYKLADLIERDRLLLATMESMNGGKLYSNAYLNDLAGCIKTLRYCAGWADKIQGRTIPIDGNFFTYTRHEPIGVCGQIIPWNFPLVMLIWKIGPALSCGNTVVVKPAEQTPLTALHVASLIKEAGFPPGVVNIVPGYGPTAGAAISSHMDIDKVAFTGSTEVGKLIKEAAGKSNLKRVTLELGGKSPCIVLADADLDNAVEFAHHGVFYHQGQCCIAASRIFVEESIYDEFVRRSVERAKKYILGNPLTPGVTQGPQIDKEQYDKILDLIESGKKEGAKLECGGGPWGNKGYFVQPTVFSNVTDEMRIAKEEIFGPVQQIMKFKSLDDVIKRANNTFYGLSAGVFTKDIDKAITISSALQAGTVW</bx:sequence><bx:formalReference><bx:accession>XP_001143065</bx:accession></bx:formalReference></xml-fragment>
2010-10-06 10:36:15.380 BST
alignmentNumber00databaseURI00expectValue00gapOpenPenalty00matrix00wordsize00gapExtensionPenalty00jobIdRunBlastpparameters0parameters00net.sf.taverna.t2.activitieswsdl-activity1.2net.sf.taverna.t2.activities.wsdl.WSDLActivity
http://www.bccs.uni.no/services/blastws/BlastPublic_2_2_21_ws0.wsdl
RunBlastp
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeRunBlastp_inputQuerySequence1AlignmentNumber0DatabaseURI0ExpectValue0GapOpenPenalty0Matrix0WordSize0GapExtensionPenalty0output00net.sf.taverna.t2.activitieswsdl-activity1.2net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLInputSplitterActivity
<s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="RunBlastp" name="parameters" qname="{http://www.bccs.uni.no/service/Blast/}RunBlastp"><s:elements><s:arraytype optional="false" unbounded="true" wrapped="false" typename="AminoacidSequenceRecord" name="QuerySequence" qname="{http://esysbio.bccs.uni.no/schema/BlastParameterSchema}BlastpParametersType>QuerySequence"><s:elementtype><s:complextype optional="false" unbounded="false" typename="AminoacidSequenceRecord" name="" qname="{http://bioxsd.org/BioXSD-0.4}AminoacidSequenceRecord"><s:elements><s:basetype optional="false" unbounded="false" typename="string" name="sequence" qname="{http://bioxsd.org/BioXSD-0.4}AminoacidSequenceRecord>sequence" /><s:complextype optional="true" unbounded="false" typename="Species" name="species" qname="{http://bioxsd.org/BioXSD-0.4}AminoacidSequenceRecord>species"><s:elements><s:basetype optional="true" unbounded="false" typename="string" name="name" qname="{http://bioxsd.org/BioXSD-0.4}Species>name" /><s:basetype optional="true" unbounded="false" typename="string" name="note" qname="{http://bioxsd.org/BioXSD-0.4}Species>note" /></s:elements></s:complextype><s:basetype optional="true" unbounded="false" typename="string" name="customName" qname="{http://bioxsd.org/BioXSD-0.4}AminoacidSequenceRecord>customName" /><s:basetype optional="true" unbounded="false" typename="string" name="customNote" qname="{http://bioxsd.org/BioXSD-0.4}AminoacidSequenceRecord>customNote" /><s:complextype optional="true" unbounded="false" typename="SequenceReference" name="formalReference" qname="{http://bioxsd.org/BioXSD-0.4}AminoacidSequenceRecord>formalReference"><s:elements><s:basetype optional="true" unbounded="false" typename="string" name="sequenceVersion" qname="{http://bioxsd.org/BioXSD-0.4}SequenceReference>sequenceVersion" /><s:basetype optional="true" unbounded="false" typename="string" name="isoformAccession" qname="{http://bioxsd.org/BioXSD-0.4}SequenceReference>isoformAccession" /><s:basetype optional="true" unbounded="false" typename="string" name="isoformNote" qname="{http://bioxsd.org/BioXSD-0.4}SequenceReference>isoformNote" /><s:complextype optional="true" unbounded="false" typename="SequencePosition" name="subsequencePosition" qname="{http://bioxsd.org/BioXSD-0.4}SequenceReference>subsequencePosition"><s:elements><s:arraytype optional="true" unbounded="true" wrapped="false" typename="SequenceSegment" name="segment" qname="{http://bioxsd.org/BioXSD-0.4}SequencePosition>segment"><s:elementtype><s:complextype optional="false" unbounded="false" typename="SequenceSegment" name="" qname="{http://bioxsd.org/BioXSD-0.4}SequenceSegment"><s:elements><s:basetype optional="false" unbounded="false" typename="string" name="min" qname="{http://bioxsd.org/BioXSD-0.4}SequenceSegment>min" /><s:basetype optional="false" unbounded="false" typename="string" name="max" qname="{http://bioxsd.org/BioXSD-0.4}SequenceSegment>max" /><s:basetype optional="true" unbounded="false" typename="string" name="strand" qname="{http://bioxsd.org/BioXSD-0.4}SequenceSegment>strand" /></s:elements></s:complextype></s:elementtype></s:arraytype><s:basetype optional="true" unbounded="false" typename="string" name="point" qname="{http://bioxsd.org/BioXSD-0.4}SequencePosition>point" /><s:basetype optional="true" unbounded="false" typename="string" name="insertion" qname="{http://bioxsd.org/BioXSD-0.4}SequencePosition>insertion" /><s:basetype optional="true" unbounded="false" typename="string" name="strand" qname="{http://bioxsd.org/BioXSD-0.4}SequencePosition>strand" /><s:complextype optional="true" unbounded="false" typename="OutsideSequencePosition" name="outside" qname="{http://bioxsd.org/BioXSD-0.4}SequencePosition>outside"><s:elements><s:basetype optional="false" unbounded="false" typename="string" name="correspondance" qname="{http://bioxsd.org/BioXSD-0.4}OutsideSequencePosition>correspondance" /><s:arraytype optional="true" unbounded="true" wrapped="false" typename="OutsideSequenceSegment" name="segment" qname="{http://bioxsd.org/BioXSD-0.4}OutsideSequencePosition>segment"><s:elementtype><s:complextype optional="false" unbounded="false" typename="OutsideSequenceSegment" name="" qname="{http://bioxsd.org/BioXSD-0.4}OutsideSequenceSegment"><s:elements><s:basetype optional="false" unbounded="false" typename="string" name="min" qname="{http://bioxsd.org/BioXSD-0.4}OutsideSequenceSegment>min" /><s:basetype optional="false" unbounded="false" typename="string" name="max" qname="{http://bioxsd.org/BioXSD-0.4}OutsideSequenceSegment>max" /><s:basetype optional="true" unbounded="false" typename="string" name="strand" qname="{http://bioxsd.org/BioXSD-0.4}OutsideSequenceSegment>strand" /></s:elements></s:complextype></s:elementtype></s:arraytype><s:basetype optional="true" unbounded="false" typename="string" name="point" qname="{http://bioxsd.org/BioXSD-0.4}OutsideSequencePosition>point" /><s:basetype optional="true" unbounded="false" typename="string" name="insertion" qname="{http://bioxsd.org/BioXSD-0.4}OutsideSequencePosition>insertion" /><s:basetype optional="true" unbounded="false" typename="string" name="strand" qname="{http://bioxsd.org/BioXSD-0.4}OutsideSequencePosition>strand" /><s:basetype optional="true" unbounded="false" typename="string" name="chromosome" qname="{http://bioxsd.org/BioXSD-0.4}OutsideSequencePosition>chromosome" /></s:elements></s:complextype><s:basetype optional="true" unbounded="false" typename="string" name="chromosome" qname="{http://bioxsd.org/BioXSD-0.4}SequencePosition>chromosome" /></s:elements></s:complextype><s:basetype optional="true" unbounded="false" typename="string" name="supersequence" qname="{http://bioxsd.org/BioXSD-0.4}SequenceReference>supersequence" /><s:basetype optional="true" unbounded="false" typename="string" name="supersequenceCustomName" qname="{http://bioxsd.org/BioXSD-0.4}SequenceReference>supersequenceCustomName" /></s:elements></s:complextype><s:complextype optional="true" unbounded="false" typename="AminoacidTranslationData" name="translationData" qname="{http://bioxsd.org/BioXSD-0.4}AminoacidSequenceRecord>translationData"><s:elements><s:complextype optional="true" unbounded="false" typename="GeneticCode" name="geneticCode" qname="{http://bioxsd.org/BioXSD-0.4}AminoacidTranslationData>geneticCode"><s:elements><s:complextype optional="true" unbounded="false" typename="EntryReference" name="reference" qname="{http://bioxsd.org/BioXSD-0.4}GeneticCode>reference"><s:elements><s:basetype optional="true" unbounded="false" typename="string" name="accession" qname="{http://bioxsd.org/BioXSD-0.4}EntryReference>accession" /><s:basetype optional="true" unbounded="false" typename="string" name="entryUri" qname="{http://bioxsd.org/BioXSD-0.4}EntryReference>entryUri" /><s:basetype optional="true" unbounded="false" typename="string" name="entryVersion" qname="{http://bioxsd.org/BioXSD-0.4}EntryReference>entryVersion" /><s:basetype optional="true" unbounded="false" typename="date" name="date" qname="{http://bioxsd.org/BioXSD-0.4}EntryReference>date" /></s:elements></s:complextype><s:arraytype optional="true" unbounded="true" wrapped="false" typename=">GeneticCode>codon" name="codon" qname="{http://bioxsd.org/BioXSD-0.4}GeneticCode>codon"><s:elementtype><s:complextype optional="false" unbounded="false" typename=">GeneticCode>codon" name="" qname="{http://bioxsd.org/BioXSD-0.4}>GeneticCode>codon"><s:elements /></s:complextype></s:elementtype></s:arraytype></s:elements></s:complextype></s:elements></s:complextype></s:elements></s:complextype></s:elementtype></s:arraytype><s:basetype optional="false" unbounded="false" typename="string" name="DatabaseURI" qname="{http://esysbio.bccs.uni.no/schema/BlastParameterSchema}BlastpParametersType>DatabaseURI" /><s:basetype optional="false" unbounded="false" typename="int" name="AlignmentNumber" qname="{http://esysbio.bccs.uni.no/schema/BlastParameterSchema}BlastpParametersType>AlignmentNumber" /><s:basetype optional="false" unbounded="false" typename="double" name="ExpectValue" qname="{http://esysbio.bccs.uni.no/schema/BlastParameterSchema}BlastpParametersType>ExpectValue" /><s:basetype optional="false" unbounded="false" typename="int" name="WordSize" qname="{http://esysbio.bccs.uni.no/schema/BlastParameterSchema}BlastpParametersType>WordSize" /><s:basetype optional="false" unbounded="false" typename="string" name="Matrix" qname="{http://esysbio.bccs.uni.no/schema/BlastParameterSchema}BlastpParametersType>Matrix" /><s:basetype optional="false" unbounded="false" typename="int" name="GapOpenPenalty" qname="{http://esysbio.bccs.uni.no/schema/BlastParameterSchema}BlastpParametersType>GapOpenPenalty" /><s:basetype optional="false" unbounded="false" typename="int" name="GapExtensionPenalty" qname="{http://esysbio.bccs.uni.no/schema/BlastParameterSchema}BlastpParametersType>GapExtensionPenalty" /></s:elements></s:complextype></s:extensions>
false
QuerySequence
1
l('text/xml')
false
DatabaseURI
0
'text/plain'
false
AlignmentNumber
0
'text/plain'
false
ExpectValue
0
'text/plain'
false
WordSize
0
'text/plain'
false
Matrix
0
'text/plain'
false
GapOpenPenalty
0
'text/plain'
false
GapExtensionPenalty
0
'text/plain'
0
output
0
'text/xml'
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeRunBlastp_outputinput0JobId00net.sf.taverna.t2.activitieswsdl-activity1.2net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLOutputSplitterActivity
<s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="RunBlastpResponse" name="parameters" qname="{http://www.bccs.uni.no/service/Blast/}RunBlastpResponse"><s:elements><s:basetype optional="false" unbounded="false" typename="string" name="JobId" qname="{http://esysbio.bccs.uni.no/schema/JobSchema}JobIdType>JobId" /></s:elements></s:complextype></s:extensions>
java.lang.String
false
input
0
'text/xml'
0
JobId
0
'text/plain'
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeRunBlastpparametersRunBlastp_inputQuerySequenceRunBlastp_inputAlignmentNumberRunBlastp_inputDatabaseURIRunBlastp_inputExpectValueRunBlastp_inputGapOpenPenaltyRunBlastp_inputMatrixRunBlastp_inputWordSizeRunBlastp_inputGapExtensionPenaltyRunBlastp_outputinputjobId
744d417d-8ceb-4109-a0a3-89572645041e
2010-10-06 10:45:25.934 BST
c3850e6b-4673-46c0-a135-60efe10fde26
2010-10-06 10:40:13.890 BST