Principle Component Analysis (PCA) over microarray data
Created: 2010-09-10 23:45:05
Last updated: 2010-09-10 23:51:03
Principle Component Analysis (PCA) over microarray data. Data is uploaded through caGrid transfer ultility.
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Workflow Components
Authors (0)
Titles (0)
Descriptions (0)
Dependencies (0)
Inputs (2)
| Name |
Description |
| workingDir |
working directory that stores all the files generated in this workflow.
|
| gct_file |
the input .gct file that contains the microarray expression data.
|
Processors (15)
| Name |
Type |
Description |
| createAnalysis2 |
wsdl |
Wsdlhttp://node255.broadinstitute.org:6060/wsrf/services/cagrid/PCA?wsdlWsdl OperationcreateAnalysis |
| createAnalysis2_output |
xmlsplitter |
|
| submitData2 |
wsdl |
Wsdlhttp://node255.broadinstitute.org:6060/wsrf/services/cagrid/PCAContext?wsdlWsdl OperationsubmitData |
| submitData2_input |
xmlsplitter |
|
| submitData2_parameterList |
xmlsplitter |
|
| submitData2_output |
xmlsplitter |
|
| submitData2_TransferServiceContextReference |
xmlsplitter |
|
| getResult2 |
wsdl |
Wsdlhttp://node255.broadinstitute.org:6060/wsrf/services/cagrid/PCAContext?wsdlWsdl OperationgetResult |
| getResult2_output |
xmlsplitter |
|
| getResult2_TransferServiceContextReference |
xmlsplitter |
|
| parameterList_ParameterList |
xmlsplitter |
|
| PCA_Parameters |
stringconstant |
|
| upload |
transfer |
|
| download |
transfer |
|
| fileName_value_1 |
stringconstant |
Valuepca_result.zip |
Datalinks (19)
| Source |
Sink |
| createAnalysis2:parameters |
createAnalysis2_output:input |
| createAnalysis2_output:PCAContextReference |
submitData2:EndpointReference |
| submitData2_input:output |
submitData2:parameters |
| submitData2_parameterList:output |
submitData2_input:parameterList |
| parameterList_ParameterList:output |
submitData2_parameterList:ParameterList |
| submitData2:parameters |
submitData2_output:input |
| submitData2_output:TransferServiceContextReference |
submitData2_TransferServiceContextReference:input |
| createAnalysis2_output:PCAContextReference |
getResult2:EndpointReference |
| getResult2:parameters |
getResult2_output:input |
| getResult2_output:TransferServiceContextReference |
getResult2_TransferServiceContextReference:input |
| PCA_Parameters:value |
parameterList_ParameterList:parameterCollection |
| workingDir |
upload:workingDir |
| submitData2_TransferServiceContextReference:EndpointReference |
upload:epr |
| gct_file |
upload:fileName |
| getResult2_TransferServiceContextReference:EndpointReference |
download:epr |
| workingDir |
download:workingDir |
| fileName_value_1:value |
download:fileName |
| download:fileName |
o |
| upload:fileName |
o1 |
Coordinations (1)
| Controller |
Target |
| upload |
getResult2 |
Uploader
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licensed under:
Version 1
(of 1)
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