This workflow uses one or more services that
are deprecated as of 31st December 2012
(over 11 years ago), and may no longer function.
Show details...
Entrez Gene to KEGG Pathway
This workflow takes in Entrez gene ids then adds the string "ncbi-geneid:" to the start of each gene id. These gene ids are then cross-referenced to KEGG gene ids. Each KEGG gene id is then sent to the KEGG pathway database and its relevant pathways returned.
Preview
Run
Run this Workflow in the Taverna Workbench...
Option 1:
Copy and paste this link into File > 'Open workflow location...'
http://myexperiment.org/workflows/15/download?version=3
[ More Info ]
Workflow Components
Reviews
(0)
Other workflows that use similar services
(98)
Only the first 2 workflows that use similar services are shown. View all workflows that use these services.
Pathways and Gene annotations for QTL region
(1)
Created: 2011-05-27 | Last updated: 2011-05-27
Credits:
Paul Fisher
Log in to make a comment
If you change
if (trimmedSplit.length == 2)
to
if (trimmedSplit.length == 3)
in
split_gene_ids
it will actually work
You can try 24605 as input
Maybe this is because of a change in the output of Kegg_gene_ids_all_species
Maybe
if (trimmedSplit.length >= 3)
is better since it would allow for future expansions
Otherwise good example of web service usage
/Tommy
Thank you for your feedback. It's much appreciated.
Paul
good example of web service usage.