filesimilarityentrezurlsdf00 OpenBabel07141012222D 2 1 0 0 0 0 0 0 0 0999 V2000 0.0000 0.0000 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 0.0000 0.0000 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0 1 2 1 0 0 0 0 M END $$$$ 2010-07-14 12:26:28.278 BST A chemical compound in SDF format 2010-07-14 12:26:39.510 BST threshold00 Parameter to define cut off for similarity 2010-07-14 13:04:26.565 BST 95 2010-07-14 13:04:02.302 BST format00 Format of input chemical structure 2010-07-14 13:05:01.603 BST eFormat_SDF 2010-07-14 13:04:50.170 BST URL text/plain 2010-05-27 15:32:58.234 BST SuccesscheckStatusKeyIn0status00net.sf.taverna.t2.activitiesdataflow-activity1.2net.sf.taverna.t2.activities.dataflow.DataflowActivitynet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Loop <activity xmlns="http://taverna.sf.net/2008/xml/t2flow"><raven><group>net.sf.taverna.t2.activities</group><artifact>beanshell-activity</artifact><version>1.2</version></raven><class>net.sf.taverna.t2.activities.beanshell.BeanshellActivity</class><inputMap /><outputMap /><configBean encoding="xstream"><net.sf.taverna.t2.activities.beanshell.BeanshellActivityConfigurationBean xmlns=""> <script>loop = "" + status.equals("eStatus_Running"); if ("true".matches(loop)) { Thread.sleep(10000); }</script> <dependencies /> <classLoaderSharing>workflow</classLoaderSharing> <localDependencies /> <artifactDependencies /> <inputs> <net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> <translatedElementType>java.lang.String</translatedElementType> <allowsLiteralValues>true</allowsLiteralValues> <name>status</name> <depth>0</depth> </net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> </inputs> <outputs> <net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityOutputPortDefinitionBean> <granularDepth>0</granularDepth> <name>loop</name> <depth>0</depth> </net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityOutputPortDefinitionBean> </outputs> </net.sf.taverna.t2.activities.beanshell.BeanshellActivityConfigurationBean></configBean><annotations /></activity> true net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 10000 10000 100 net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokegetEntrezUrlwebenv0key0db0url00net.sf.taverna.t2.activitiesdataflow-activity1.2net.sf.taverna.t2.activities.dataflow.DataflowActivitynet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokeencodebytes0base6400net.sf.taverna.t2.activitieslocalworker-activity1.2net.sf.taverna.t2.activities.localworker.LocalworkerActivity org.embl.ebi.escience.scuflworkers.java.EncodeBase64 commons-codec:commons-codec:1.3 workflow commons-codec commons-codec 1.3 1635363350 [B true bytes 0 'application/octet-stream' 0 base64 0 'text/plain' net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokegetEntrezKeylistKey0webenv00key00db00net.sf.taverna.t2.activitiesdataflow-activity1.2net.sf.taverna.t2.activities.dataflow.DataflowActivitynet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokedoSimilaritySearch2DstrKey0threshold0listKey00net.sf.taverna.t2.activitiesdataflow-activity1.2net.sf.taverna.t2.activities.dataflow.DataflowActivitynet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokecreateInputStructureBase64structure0format0strKey00net.sf.taverna.t2.activitiesdataflow-activity1.2net.sf.taverna.t2.activities.dataflow.DataflowActivitynet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokecheckStatusKeyIndoSimilaritySearch2DlistKeygetEntrezUrlwebenvgetEntrezKeywebenvgetEntrezUrlkeygetEntrezKeykeygetEntrezUrldbgetEntrezKeydbencodebytessdfgetEntrezKeylistKeydoSimilaritySearch2DlistKeydoSimilaritySearch2DstrKeycreateInputStructureBase64strKeydoSimilaritySearch2DthresholdthresholdcreateInputStructureBase64structureencodebase64createInputStructureBase64formatformatURLgetEntrezUrlurlSuccesscheckStatusstatus fbda0408-6d0a-4f57-bcb1-7dc08c4c39bd 2010-07-14 13:07:40.470 BST 2010-05-27 15:32:58.343 BST file-similarity-entrez-url 2010-05-27 15:32:58.343 BST 976dcb20-9c8d-42e2-9bf1-68b69b9a0cc2 2010-07-14 12:52:27.179 BST db0d3bb1-0168-4a1a-a352-d568d142bf60 2010-07-14 12:16:55.442 BST 42b4a2df-6942-4cb4-ae4b-c9e016b3cde8 2010-07-14 12:32:04.471 BST 5a512754-6c59-4ff7-b8e4-34626d4c9f21 2010-07-14 12:13:48.958 BST fe42c67d-0a77-4d77-8490-713ee66796a7 2010-07-14 12:59:11.839 BST 4767154a-bcdf-4f0a-a58c-3b6d710c2450 2010-07-14 13:05:09.997 BST 232022e0-70f2-4268-8c77-92c95d669395 2010-07-14 12:14:39.202 BST ed4a1b93-e939-49ef-92d6-fb15dc4b0f18 2010-07-14 12:26:41.724 BST 2010-05-27 15:32:58.343 BST 0ca3cc51-48b9-4d2d-9c34-9075a62cf93f 2010-07-14 13:01:57.180 BST Workflow7listKey00webenvkeydbGetEntrezKeyparameters0parameters00net.sf.taverna.t2.activitieswsdl-activity1.2net.sf.taverna.t2.activities.wsdl.WSDLActivity http://pubchem.ncbi.nlm.nih.gov/pug_soap/pug_soap.cgi?wsdl GetEntrezKey net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeGetEntrezKey_inputListKey0output00net.sf.taverna.t2.activitieswsdl-activity1.2net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLInputSplitterActivity <s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="GetEntrezKey" name="parameters" qname="{http://pubchem.ncbi.nlm.nih.gov/}GetEntrezKey"><s:elements><s:basetype optional="false" unbounded="false" typename="string" name="ListKey" qname="{http://pubchem.ncbi.nlm.nih.gov/}&gt;GetEntrezKey&gt;ListKey" /></s:elements></s:complextype></s:extensions> false ListKey 0 'text/plain' 0 output 0 'text/xml' net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeGetEntrezKey_outputinput0EntrezKey00net.sf.taverna.t2.activitieswsdl-activity1.2net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLOutputSplitterActivity <s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="GetEntrezKeyResponse" name="parameters" qname="{http://pubchem.ncbi.nlm.nih.gov/}GetEntrezKeyResponse"><s:elements><s:complextype optional="false" unbounded="false" typename="EntrezKey" name="EntrezKey" qname="{http://pubchem.ncbi.nlm.nih.gov/}&gt;GetEntrezKeyResponse&gt;EntrezKey"><s:elements><s:basetype optional="false" unbounded="false" typename="string" name="db" qname="{http://pubchem.ncbi.nlm.nih.gov/}EntrezKey&gt;db" /><s:basetype optional="false" unbounded="false" typename="string" name="key" qname="{http://pubchem.ncbi.nlm.nih.gov/}EntrezKey&gt;key" /><s:basetype optional="false" unbounded="false" typename="string" name="webenv" qname="{http://pubchem.ncbi.nlm.nih.gov/}EntrezKey&gt;webenv" /></s:elements></s:complextype></s:elements></s:complextype></s:extensions> java.lang.String false input 0 'text/xml' 0 EntrezKey 0 'text/xml' net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeGetEntrezKey_EntrezKeyinput0webenv00key00db00net.sf.taverna.t2.activitieswsdl-activity1.2net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLOutputSplitterActivity <s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="EntrezKey" name="EntrezKey" qname="{http://pubchem.ncbi.nlm.nih.gov/}&gt;GetEntrezKeyResponse&gt;EntrezKey"><s:elements><s:basetype optional="false" unbounded="false" typename="string" name="db" qname="{http://pubchem.ncbi.nlm.nih.gov/}EntrezKey&gt;db" /><s:basetype optional="false" unbounded="false" typename="string" name="key" qname="{http://pubchem.ncbi.nlm.nih.gov/}EntrezKey&gt;key" /><s:basetype optional="false" unbounded="false" typename="string" name="webenv" qname="{http://pubchem.ncbi.nlm.nih.gov/}EntrezKey&gt;webenv" /></s:elements></s:complextype></s:extensions> java.lang.String false input 0 'text/xml' 0 db 0 'text/plain' 0 key 0 'text/plain' 0 webenv 0 'text/plain' net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeGetEntrezKeyparametersGetEntrezKey_inputoutputGetEntrezKey_inputListKeylistKeyGetEntrezKey_outputinputGetEntrezKeyparametersGetEntrezKey_EntrezKeyinputGetEntrezKey_outputEntrezKeywebenvGetEntrezKey_EntrezKeywebenvkeyGetEntrezKey_EntrezKeykeydbGetEntrezKey_EntrezKeydb 8d10f4bc-3c7c-4556-bde4-0b74884edd6a 2010-07-14 12:51:42.938 BST Workflow26structure00format00strKeyInputStructureBase64parameters0parameters00net.sf.taverna.t2.activitieswsdl-activity1.2net.sf.taverna.t2.activities.wsdl.WSDLActivity http://pubchem.ncbi.nlm.nih.gov/pug_soap/pug_soap.cgi?wsdl InputStructureBase64 net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeInputStructureBase64_inputstructure0format0output00net.sf.taverna.t2.activitieswsdl-activity1.2net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLInputSplitterActivity <s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="InputStructureBase64" name="parameters" qname="{http://pubchem.ncbi.nlm.nih.gov/}InputStructureBase64"><s:elements><s:basetype optional="false" unbounded="false" typename="base64Binary" name="structure" qname="{http://pubchem.ncbi.nlm.nih.gov/}&gt;InputStructureBase64&gt;structure" /><s:basetype optional="false" unbounded="false" typename="string" name="format" qname="{http://pubchem.ncbi.nlm.nih.gov/}&gt;InputStructureBase64&gt;format" /></s:elements></s:complextype></s:extensions> false structure 0 'application/octet-stream' false format 0 'text/plain' 0 output 0 'text/xml' net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeInputStructureBase64_outputinput0StrKey00net.sf.taverna.t2.activitieswsdl-activity1.2net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLOutputSplitterActivity <s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="InputStructureBase64Response" name="parameters" qname="{http://pubchem.ncbi.nlm.nih.gov/}InputStructureBase64Response"><s:elements><s:basetype optional="false" unbounded="false" typename="string" name="StrKey" qname="{http://pubchem.ncbi.nlm.nih.gov/}&gt;InputStructureBase64Response&gt;StrKey" /></s:elements></s:complextype></s:extensions> java.lang.String false input 0 'text/xml' 0 StrKey 0 'text/plain' net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeInputStructureBase64parametersInputStructureBase64_inputoutputInputStructureBase64_inputstructurestructureInputStructureBase64_inputformatformatInputStructureBase64_outputinputInputStructureBase64parametersstrKeyInputStructureBase64_outputStrKey ce46a296-02ea-4c69-b05b-f92a94eabb71 2010-07-14 13:01:32.254 BST Workflow15strKey00threshold00listKeySimilaritySearch2Dparameters0parameters00net.sf.taverna.t2.activitieswsdl-activity1.2net.sf.taverna.t2.activities.wsdl.WSDLActivity http://pubchem.ncbi.nlm.nih.gov/pug_soap/pug_soap.cgi?wsdl SimilaritySearch2D net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeSimilaritySearch2D_inputStrKey0simOptions0output00net.sf.taverna.t2.activitieswsdl-activity1.2net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLInputSplitterActivity <s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="SimilaritySearch2D" name="parameters" qname="{http://pubchem.ncbi.nlm.nih.gov/}SimilaritySearch2D"><s:elements><s:basetype optional="false" unbounded="false" typename="string" name="StrKey" qname="{http://pubchem.ncbi.nlm.nih.gov/}&gt;SimilaritySearch2D&gt;StrKey" /><s:complextype optional="false" unbounded="false" typename="SimilaritySearchOptions" name="simOptions" qname="{http://pubchem.ncbi.nlm.nih.gov/}&gt;SimilaritySearch2D&gt;simOptions"><s:elements><s:basetype optional="false" unbounded="false" typename="int" name="threshold" qname="{http://pubchem.ncbi.nlm.nih.gov/}SimilaritySearchOptions&gt;threshold" /><s:basetype optional="true" unbounded="false" typename="string" name="ToWebEnv" qname="{http://pubchem.ncbi.nlm.nih.gov/}SimilaritySearchOptions&gt;ToWebEnv" /></s:elements></s:complextype><s:complextype optional="true" unbounded="false" typename="LimitsType" name="limits" qname="{http://pubchem.ncbi.nlm.nih.gov/}&gt;SimilaritySearch2D&gt;limits"><s:elements><s:basetype optional="true" unbounded="false" typename="int" name="seconds" qname="{http://pubchem.ncbi.nlm.nih.gov/}LimitsType&gt;seconds" /><s:basetype optional="true" unbounded="false" typename="int" name="maxRecords" qname="{http://pubchem.ncbi.nlm.nih.gov/}LimitsType&gt;maxRecords" /><s:basetype optional="true" unbounded="false" typename="string" name="ListKey" qname="{http://pubchem.ncbi.nlm.nih.gov/}LimitsType&gt;ListKey" /></s:elements></s:complextype></s:elements></s:complextype></s:extensions> false StrKey 0 'text/plain' false simOptions 0 'text/xml' false limits 0 'text/xml' 0 output 0 'text/xml' net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeSimilaritySearch2D_outputinput0ListKey00net.sf.taverna.t2.activitieswsdl-activity1.2net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLOutputSplitterActivity <s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="SimilaritySearch2DResponse" name="parameters" qname="{http://pubchem.ncbi.nlm.nih.gov/}SimilaritySearch2DResponse"><s:elements><s:basetype optional="false" unbounded="false" typename="string" name="ListKey" qname="{http://pubchem.ncbi.nlm.nih.gov/}&gt;SimilaritySearch2DResponse&gt;ListKey" /></s:elements></s:complextype></s:extensions> java.lang.String false input 0 'text/xml' 0 ListKey 0 'text/plain' net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeSimilaritySearch2D_simOptionsthreshold0output00net.sf.taverna.t2.activitieswsdl-activity1.2net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLInputSplitterActivity <s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="SimilaritySearchOptions" name="simOptions" qname="{http://pubchem.ncbi.nlm.nih.gov/}&gt;SimilaritySearch2D&gt;simOptions"><s:elements><s:basetype optional="false" unbounded="false" typename="int" name="threshold" qname="{http://pubchem.ncbi.nlm.nih.gov/}SimilaritySearchOptions&gt;threshold" /><s:basetype optional="true" unbounded="false" typename="string" name="ToWebEnv" qname="{http://pubchem.ncbi.nlm.nih.gov/}SimilaritySearchOptions&gt;ToWebEnv" /></s:elements></s:complextype></s:extensions> false threshold 0 'text/plain' false ToWebEnv 0 'text/plain' 0 output 0 'text/xml' net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeSimilaritySearch2DparametersSimilaritySearch2D_inputoutputSimilaritySearch2D_inputStrKeystrKeySimilaritySearch2D_inputsimOptionsSimilaritySearch2D_simOptionsoutputSimilaritySearch2D_outputinputSimilaritySearch2DparametersSimilaritySearch2D_simOptionsthresholdthresholdlistKeySimilaritySearch2D_outputListKey 84706be3-29a0-4b33-8553-ad784d1d9f95 2010-07-14 12:58:49.9 BST 92995696-6411-4e91-a336-8998494996dc 2010-07-14 12:56:58.679 BST statuscheckKeyIn00 2010-05-27 15:29:09.484 BST text/plain 2010-05-27 15:29:09.484 BST statusGetOperationStatus_inAnyKey0output00net.sf.taverna.t2.activitieswsdl-activity1.2net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLInputSplitterActivity <s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="GetOperationStatus" name="parameters" qname="{http://pubchem.ncbi.nlm.nih.gov/}GetOperationStatus"><s:elements><s:basetype optional="false" unbounded="false" typename="string" name="AnyKey" qname="{http://pubchem.ncbi.nlm.nih.gov/}AnyKeyType&gt;AnyKey" /></s:elements></s:complextype></s:extensions> java.lang.String true AnyKey 0 'text/plain' 0 output 0 'text/xml' net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 0 0 0 net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeGetOperationStatus_outinput0status00net.sf.taverna.t2.activitieswsdl-activity1.2net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLOutputSplitterActivity <s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="GetOperationStatusResponse" name="parameters" qname="{http://pubchem.ncbi.nlm.nih.gov/}GetOperationStatusResponse"><s:elements><s:basetype optional="false" unbounded="false" typename="string" name="status" qname="{http://pubchem.ncbi.nlm.nih.gov/}&gt;GetOperationStatusResponse&gt;status" /></s:elements></s:complextype></s:extensions> java.lang.String true input 0 'text/xml' 0 status 0 'text/plain' net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 0 0 0 net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeGetOperationStatusparameters0attachmentList11parameters00net.sf.taverna.t2.activitieswsdl-activity1.2net.sf.taverna.t2.activities.wsdl.WSDLActivity http://pubchem.ncbi.nlm.nih.gov/pug_soap/pug_soap.cgi?wsdl GetOperationStatus net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 0 0 0 net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeGetOperationStatus_inAnyKeyKeyInGetOperationStatus_outinputGetOperationStatusparametersGetOperationStatusparametersGetOperationStatus_inoutputstatusGetOperationStatus_outstatus 2010-05-27 15:29:10.171 BST 096ae922-2889-4f2a-a7f5-e6bc6d81a92b 2010-07-14 13:06:38.102 BST 2010-05-27 15:29:10.171 BST c0856817-d989-448a-b8ba-5804e9ea7ccf 2010-07-14 12:13:49.149 BST status-check 2010-05-27 15:29:10.171 BST Workflow50db00key00webenv00urlGetEntrezUrlparameters0parameters00net.sf.taverna.t2.activitieswsdl-activity1.2net.sf.taverna.t2.activities.wsdl.WSDLActivity http://pubchem.ncbi.nlm.nih.gov/pug_soap/pug_soap.cgi?wsdl GetEntrezUrl net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeGetEntrezUrl_outputinput0url00net.sf.taverna.t2.activitieswsdl-activity1.2net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLOutputSplitterActivity <s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="GetEntrezUrlResponse" name="parameters" qname="{http://pubchem.ncbi.nlm.nih.gov/}GetEntrezUrlResponse"><s:elements><s:basetype optional="false" unbounded="false" typename="string" name="url" qname="{http://pubchem.ncbi.nlm.nih.gov/}&gt;GetEntrezUrlResponse&gt;url" /></s:elements></s:complextype></s:extensions> java.lang.String false input 0 'text/xml' 0 url 0 'text/plain' net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeGetEntrezUrl_inputEntrezKey0output00net.sf.taverna.t2.activitieswsdl-activity1.2net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLInputSplitterActivity <s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="GetEntrezUrl" name="parameters" qname="{http://pubchem.ncbi.nlm.nih.gov/}GetEntrezUrl"><s:elements><s:complextype optional="false" unbounded="false" typename="EntrezKey" name="EntrezKey" qname="{http://pubchem.ncbi.nlm.nih.gov/}&gt;GetEntrezUrl&gt;EntrezKey"><s:elements><s:basetype optional="false" unbounded="false" typename="string" name="db" qname="{http://pubchem.ncbi.nlm.nih.gov/}EntrezKey&gt;db" /><s:basetype optional="false" unbounded="false" typename="string" name="key" qname="{http://pubchem.ncbi.nlm.nih.gov/}EntrezKey&gt;key" /><s:basetype optional="false" unbounded="false" typename="string" name="webenv" qname="{http://pubchem.ncbi.nlm.nih.gov/}EntrezKey&gt;webenv" /></s:elements></s:complextype></s:elements></s:complextype></s:extensions> false EntrezKey 0 'text/xml' 0 output 0 'text/xml' net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeGetEntrezUrl_EntrezKeydb0key0webenv0output00net.sf.taverna.t2.activitieswsdl-activity1.2net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLInputSplitterActivity <s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="EntrezKey" name="EntrezKey" qname="{http://pubchem.ncbi.nlm.nih.gov/}&gt;GetEntrezUrl&gt;EntrezKey"><s:elements><s:basetype optional="false" unbounded="false" typename="string" name="db" qname="{http://pubchem.ncbi.nlm.nih.gov/}EntrezKey&gt;db" /><s:basetype optional="false" unbounded="false" typename="string" name="key" qname="{http://pubchem.ncbi.nlm.nih.gov/}EntrezKey&gt;key" /><s:basetype optional="false" unbounded="false" typename="string" name="webenv" qname="{http://pubchem.ncbi.nlm.nih.gov/}EntrezKey&gt;webenv" /></s:elements></s:complextype></s:extensions> false db 0 'text/plain' false key 0 'text/plain' false webenv 0 'text/plain' 0 output 0 'text/xml' net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeGetEntrezUrlparametersGetEntrezUrl_inputoutputGetEntrezUrl_outputinputGetEntrezUrlparametersGetEntrezUrl_inputEntrezKeyGetEntrezUrl_EntrezKeyoutputGetEntrezUrl_EntrezKeydbdbGetEntrezUrl_EntrezKeykeykeyGetEntrezUrl_EntrezKeywebenvwebenvurlGetEntrezUrl_outputurl aedca46d-a10e-49ac-8f08-3801147debc5 2010-07-14 12:12:41.914 BST 58692b78-a496-4a55-8654-bf69484ab194 2010-07-14 12:30:29.373 BST