Provenance Challenge 1 workflow part B -- mockup version
Created: 2010-06-21 09:48:42
Last updated: 2010-06-21 09:49:25
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Provenance Challenge 1 workflow -- mockup version |
Descriptions (1)
simulates the image processing for the PC1 workflow using beanshell that simply track test strings
an image is a pair (header, image) specified as a list of depth 1: [header,image]
so each processor with image input takes an input list.
Note that the processors are designed to operate on single images (except softmean that operates on a list of images), but because the initial input is a list of images, all are processed by implicit iteration. |
Dependencies (0)
Inputs (1)
Name |
Description |
PCW_B_Input |
a list with two values
|
Processors (3)
Name |
Type |
Description |
slicer |
beanshell |
Script// slicer
// takes a pair [header, image] and an axis
// and slices the image along that axis
atlasSlice = new ArrayList();
atlasSlice.add(axis+"-slice("+atlasAverage.get(0)+")");
atlasSlice.add(axis+"-slice("+atlasAverage.get(1)+")");
|
converter |
beanshell |
Script// converter (header, image) -> (header, image)
List atlasGraphic = new ArrayList();
atlasGraphic.add("convert("+atlasSlice.get(0)+")");
atlasGraphic.add("convert("+atlasSlice.get(1)+")");
|
makeAxes |
beanshell |
Scriptaxes = new ArrayList();
axes.add("x");
axes.add("y");
axes.add("z");
|
Beanshells (3)
Name |
Description |
Inputs |
Outputs |
slicer |
|
atlasAverage
axis
|
atlasSlice
|
converter |
|
atlasSlice
|
atlasGraphic
|
makeAxes |
|
|
axes
|
Outputs (1)
Name |
Description |
atlasGraphic |
|
Datalinks (4)
Source |
Sink |
makeAxes:axes |
slicer:axis |
PCW_B_Input |
slicer:atlasAverage |
slicer:atlasSlice |
converter:atlasSlice |
converter:atlasGraphic |
atlasGraphic |
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