Nucleotide FASTA to PDB file.

Created: 2010-06-11 06:40:25 Last updated: 2010-06-11 06:44:25

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This workflow is designed to convert nucleotide fasta sequence to corresponding pdb file,which could be used for modelling. In this workflow nucleotide fasta sequence is given as input, eg. >gi|119889797|ref|XM_864887.2| PREDICTED: Bos taurus amylase, alpha 2A (pancreatic), transcript variant 2 (AMY2A), mRNA

ATGAAGTTTTTTCTGTTGCTTTCAGCAATTGGGTTCTGCTGGGCTCAGTATGACCCACACGTCAAATCTG GACGGACCTCCATTGTCCATCTGTTTGAGTGGCGCTGGGTAGATATTGCTCTTGAATGTGAGCGATACTT AGCCCCCAAAGGATTTGGAGGGGTTCAGGTCTCCCCACCCAGTGAAAATGCTGTGATTACTGACCCTTCA CGACCTTGGTGGGAAAGATACCAACCAGTTAGTTACAAGT

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Workflow Components

Authors (1)

Titles (1)

Descriptions (2)

Dependencies (0)

Inputs (1)

Name	Description
FASTA

Processors (3)

Name	Type	Description
FASTA	biomoby	Endpoint http://moby.ucalgary.ca/moby/MOBY-Central.pl Biomoby Service Name FASTA Biomoby Authority Name www.sdsc.edu
String(content)	biomoby	Endpoint http://moby.ucalgary.ca/moby/MOBY-Central.pl Biomoby Service Name String Biomoby Authority Name
showPDBFromFasta	biomoby	Endpoint http://moby.ucalgary.ca/moby/MOBY-Central.pl Biomoby Service Name showPDBFromFasta Biomoby Authority Name mmb.pcb.ub.es Biomoby Category

Beanshells (0)

Outputs (1)

Name	Description
PDB_Text

Datalinks (4)

Source	Sink
String(content):mobyData	FASTA:String(content)
FASTA	String(content):value
FASTA:mobyData	showPDBFromFasta:FASTA(sequence)
showPDBFromFasta:PDB-Text(output)	PDB_Text