A simple CQL query workflow in caGrid

Created: 2010-05-24 23:52:05 Last updated: 2010-05-25 19:20:30

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1. CQL is a language to query data from caGrid/caBIG services. This workflow is tested with Taverna 2.1.2 and the caGrid Workflow Suite downloadable from http://www.mcs.anl.gov/~wtan/t2/.

2.More information regarding CQL can be found from http://wiki.cagrid.org/display/dataservices.

3. Sample input (95) is provided in the workflow. It is to query all the hybridization data within a microarray experiment whose id is 95.

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Inputs (1)

Name	Description
exp_id	caArray experiment id

Processors (2)

Name	Type	Description
CQL_Builder	cql	Value
query	wsdl	Wsdl http://array.nci.nih.gov/wsrf/services/cagrid/CaArraySvc?wsdl Wsdl Operation query

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Outputs (1)

Name	Description
o

Datalinks (3)

Source	Sink
exp_id	CQL_Builder:var1
CQL_Builder:value	query:parameters
query:parameters	o

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Taverna 2

Information Uploader

Wei Tan

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Wei Tan

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A simple CQL query workflow in caGrid

Created by Wei Tan on Monday 24 May 2010 23:52:05 (UTC)

Last edited by Wei Tan on Tuesday 25 May 2010 19:20:31 (UTC)

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Taverna 2

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Wei Tan

Query caArray data service and retrieving ... (2)

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need to install Taverna 2 caGrid integration suite from http://www.mcs.anl.gov/~wtan/t2/ and get a cagrid Dorian account (see http://wiki.cagrid.org/display/caGrid13/Home)

Created: 2010-05-24 | Last updated: 2010-05-24

Credits: Wei Tan

A simple CQL query workflow in caGrid

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Workflow Components

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Wsdl

Wsdl Operation

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Other workflows that use similar services (1)