A simple CQL query workflow in caGrid

Created: 2010-05-24 23:52:05 Last updated: 2010-05-25 19:20:30

Download Workflow

1. CQL is a language to query data from caGrid/caBIG services. This workflow is tested with Taverna 2.1.2 and the caGrid Workflow Suite downloadable from http://www.mcs.anl.gov/~wtan/t2/.

2.More information regarding CQL can be found from http://wiki.cagrid.org/display/dataservices.

3. Sample input (95) is provided in the workflow. It is to query all the hybridization data within a microarray experiment whose id is 95.

Preview

Download as scalable diagram (SVG)

Run

Run this Workflow in the Taverna Workbench...

Option 1:

Copy and paste this link into File > 'Open workflow location...'
http://myexperiment.org/workflows/1288/download?version=1
[ More Info Expand ]

Workflow Components

Authors (0)

Titles (0)

Descriptions (0)

Dependencies (0)

Inputs (1)

Name	Description
exp_id	caArray experiment id

Processors (2)

Name	Type	Description
CQL_Builder	cql	Value
query	wsdl	Wsdl http://array.nci.nih.gov/wsrf/services/cagrid/CaArraySvc?wsdl Wsdl Operation query

Beanshells (0)

Outputs (1)

Name	Description
o

Datalinks (3)

Source	Sink
exp_id	CQL_Builder:var1
CQL_Builder:value	query:parameters
query:parameters	o

Coordinations (0)

Information Workflow Type

Taverna 2

Information Uploader

Wei Tan

Information License

All versions of this Workflow are licensed under:

Information Version 1 (of 1)

Information Credits (1)

(People/Groups)

Wei Tan

Information Attributions (0)

(Workflows/Files)

None

Information Tags (5)

Uploader tags

Log in to add Tags

Information Shared with Groups (0)

None

Information Featured In Packs (0)

None

Log in to add to one of your Packs

Information Attributed By (0)

(Workflows/Files)

None

Information Favourited By (0)

No one

Information Statistics

1532 viewings

1382 downloads

[ see breakdown ]

Citations (0)

None

Version History

In chronological order:

A simple CQL query workflow in caGrid

Created by Wei Tan on Monday 24 May 2010 23:52:05 (UTC)

Last edited by Wei Tan on Tuesday 25 May 2010 19:20:31 (UTC)

Reviews (0)

No reviews yet

Be the first to review!

Comments (0)

View Timeline

No comments yet

Log in to make a comment

Other workflows that use similar services (1)

Taverna 2

Uploader

Wei Tan

Query caArray data service and retrieving ... (2)

Download

need to install Taverna 2 caGrid integration suite from http://www.mcs.anl.gov/~wtan/t2/ and get a cagrid Dorian account (see http://wiki.cagrid.org/display/caGrid13/Home)

Created: 2010-05-24 | Last updated: 2010-05-24

Credits: Wei Tan

A simple CQL query workflow in caGrid

Preview

Run

Run this Workflow in the Taverna Workbench...

Workflow Components

Value

Wsdl

Wsdl Operation

Reviews (0)

Comments (0)

Other workflows that use similar services (1)