Warp2D_2D_Time_AlignmentrefrencePeaklistFile00 test_data/peakslists/refrence_peaklist.pks 2010-11-17 17:04:29.976 CET path to peaklist file to be used as Refrence 2010-11-17 16:11:39.592 CET test_data/peakslists/Lab1_GLY_BreastChodosh_normal_R1.pks 2010-11-17 17:04:11.58 CET test_data/ 2010-11-17 16:12:46.777 CET test_data/Lab1_GLY_BreastChodosh_normal_R1.pks 2010-11-17 16:13:00.429 CET test_data/test_data/peakslistsLab1_GLY_BreastChodosh_normal_R1.pks 2010-11-17 17:03:48.531 CET path to peaklist file to be used as Refrence Note: only path string not file conten 2010-11-17 16:59:05.995 CET sampPeaklistFile00 path to peaklist file to be used as sampl. Note: only path string not file contents 2010-11-17 17:05:29.703 CET test_data/peakslists/samp_peaklist.pks 2010-11-17 17:04:45.809 CET test_data/Lab2_GLY_BreastChodosh_normal_R1.pks 2010-11-17 16:14:54.445 CET Lab2_GLY_BreastChodosh_normal_R1.pks 2010-11-17 16:13:20.965 CET path to peaklist file to be used as samp/Algh alig 2010-11-17 16:14:19.309 CET Lab1_GLY_BreastChodosh_normal_R1.pks 2010-11-17 16:13:09.609 CET path to peaklist file to be used as sampl. 2010-11-17 16:14:35.389 CET ResultFileMessagewarp2Dparameters0parameters00net.sf.taverna.t2.activitieswsdl-activity1.0net.sf.taverna.t2.activities.wsdl.WSDLActivity http://ws.nbpp.nl/axis2/services/Warping?wsdl warp2D net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokewarp2D_inputAuthKey0maxPeaksPerSegment0MZwidth0RTwidth0winSize0slack0NTimePoints0sampShift0outputWarpedFileName0refPeakListFileName0alignPeakListFileName0output00net.sf.taverna.t2.activitieswsdl-activity1.0net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLInputSplitterActivity <s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="warp2D" name="parameters" qname="{http://farmacie.rug.nl}warp2D"><s:elements><s:basetype optional="true" unbounded="false" typename="string" name="AuthKey" qname="{http://farmacie.rug.nl}&gt;warp2D&gt;AuthKey" /><s:basetype optional="true" unbounded="false" typename="double" name="MZwidth" qname="{http://farmacie.rug.nl}&gt;warp2D&gt;MZwidth" /><s:basetype optional="true" unbounded="false" typename="double" name="RTwidth" qname="{http://farmacie.rug.nl}&gt;warp2D&gt;RTwidth" /><s:basetype optional="true" unbounded="false" typename="string" name="refPeakListFileName" qname="{http://farmacie.rug.nl}&gt;warp2D&gt;refPeakListFileName" /><s:basetype optional="true" unbounded="false" typename="string" name="alignPeakListFileName" qname="{http://farmacie.rug.nl}&gt;warp2D&gt;alignPeakListFileName" /><s:basetype optional="true" unbounded="false" typename="string" name="outputWarpedFileName" qname="{http://farmacie.rug.nl}&gt;warp2D&gt;outputWarpedFileName" /><s:basetype optional="true" unbounded="false" typename="int" name="winSize" qname="{http://farmacie.rug.nl}&gt;warp2D&gt;winSize" /><s:basetype optional="true" unbounded="false" typename="int" name="slack" qname="{http://farmacie.rug.nl}&gt;warp2D&gt;slack" /><s:basetype optional="true" unbounded="false" typename="int" name="maxPeaksPerSegment" qname="{http://farmacie.rug.nl}&gt;warp2D&gt;maxPeaksPerSegment" /><s:basetype optional="true" unbounded="false" typename="int" name="NTimePoints" qname="{http://farmacie.rug.nl}&gt;warp2D&gt;NTimePoints" /><s:basetype optional="true" unbounded="false" typename="int" name="sampShift" qname="{http://farmacie.rug.nl}&gt;warp2D&gt;sampShift" /></s:elements></s:complextype></s:extensions> false AuthKey 0 'text/plain' false MZwidth 0 'text/plain' false RTwidth 0 'text/plain' false refPeakListFileName 0 'text/plain' false alignPeakListFileName 0 'text/plain' false outputWarpedFileName 0 'text/plain' false winSize 0 'text/plain' false slack 0 'text/plain' false maxPeaksPerSegment 0 'text/plain' false NTimePoints 0 'text/plain' false sampShift 0 'text/plain' 0 output 0 'text/xml' net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokewarp2D_outputinput0return00net.sf.taverna.t2.activitieswsdl-activity1.0net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLOutputSplitterActivity <s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="warp2DResponse" name="parameters" qname="{http://farmacie.rug.nl}warp2DResponse"><s:elements><s:basetype optional="true" unbounded="false" typename="string" name="return" qname="{http://farmacie.rug.nl}&gt;warp2DResponse&gt;return" /></s:elements></s:complextype></s:extensions> java.lang.String false input 0 'text/xml' 0 return 0 'text/plain' net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeAPIKey_valuevalue00net.sf.taverna.t2.activitiesstringconstant-activity1.0net.sf.taverna.t2.activities.stringconstant.StringConstantActivity test_warp2d@rug.nl net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokemaxPeaksPerSegment_valuevalue00net.sf.taverna.t2.activitiesstringconstant-activity1.0net.sf.taverna.t2.activities.stringconstant.StringConstantActivity 60 net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeMZwidth_valuevalue00net.sf.taverna.t2.activitiesstringconstant-activity1.0net.sf.taverna.t2.activities.stringconstant.StringConstantActivity 0.1 net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeRTwidth_valuevalue00net.sf.taverna.t2.activitiesstringconstant-activity1.0net.sf.taverna.t2.activities.stringconstant.StringConstantActivity 0.40 net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokewinSize_valuevalue00net.sf.taverna.t2.activitiesstringconstant-activity1.0net.sf.taverna.t2.activities.stringconstant.StringConstantActivity 40 net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokeslack_valuevalue00net.sf.taverna.t2.activitiesstringconstant-activity1.0net.sf.taverna.t2.activities.stringconstant.StringConstantActivity 8 net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeNTimePoints_valuevalue00net.sf.taverna.t2.activitiesstringconstant-activity1.0net.sf.taverna.t2.activities.stringconstant.StringConstantActivity 3000 net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokesampShift_valuevalue00net.sf.taverna.t2.activitiesstringconstant-activity1.0net.sf.taverna.t2.activities.stringconstant.StringConstantActivity 0 net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeoutputWarpedFileName_valuevalue00net.sf.taverna.t2.activitiesstringconstant-activity1.0net.sf.taverna.t2.activities.stringconstant.StringConstantActivity taverna_warped net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokegetJobStateparameters0parameters00net.sf.taverna.t2.activitieswsdl-activity1.0net.sf.taverna.t2.activities.wsdl.WSDLActivity http://ws.nbpp.nl/axis2/services/Warping?wsdl getJobState net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Loop <activity xmlns="http://taverna.sf.net/2008/xml/t2flow"><raven><group>net.sf.taverna.t2.activities</group><artifact>beanshell-activity</artifact><version>1.0</version></raven><class>net.sf.taverna.t2.activities.beanshell.BeanshellActivity</class><inputMap /><outputMap /><configBean encoding="xstream"><net.sf.taverna.t2.activities.beanshell.BeanshellActivityConfigurationBean xmlns=""> <script>loop = "" + ! (parameters.matches(".*downloaded.*") || parameters.matches(".*Error.*") ); if ("true".matches(loop)) { Thread.sleep(10000); }</script> <dependencies /> <classLoaderSharing>workflow</classLoaderSharing> <localDependencies /> <artifactDependencies /> <inputs> <net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> <handledReferenceSchemes class="java.util.Collections$EmptyList" /> <translatedElementType>java.lang.String</translatedElementType> <allowsLiteralValues>true</allowsLiteralValues> <name>parameters</name> <depth>0</depth> <mimeTypes class="java.util.Collections$EmptyList" reference="../handledReferenceSchemes" /> </net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> </inputs> <outputs> <net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityOutputPortDefinitionBean> <granularDepth>0</granularDepth> <name>loop</name> <depth>0</depth> <mimeTypes /> </net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityOutputPortDefinitionBean> </outputs> </net.sf.taverna.t2.activities.beanshell.BeanshellActivityConfigurationBean></configBean><annotations /></activity> true net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokegetJobState_inputAuthKey0jobId0output00net.sf.taverna.t2.activitieswsdl-activity1.0net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLInputSplitterActivity <s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="getJobState" name="parameters" qname="{http://farmacie.rug.nl}getJobState"><s:elements><s:basetype optional="true" unbounded="false" typename="string" name="AuthKey" qname="{http://farmacie.rug.nl}&gt;getJobState&gt;AuthKey" /><s:basetype optional="true" unbounded="false" typename="string" name="jobId" qname="{http://farmacie.rug.nl}&gt;getJobState&gt;jobId" /></s:elements></s:complextype></s:extensions> false AuthKey 0 'text/plain' false jobId 0 'text/plain' 0 output 0 'text/xml' net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeSleepin0out00net.sf.taverna.t2.activitiesbeanshell-activity1.0net.sf.taverna.t2.activities.beanshell.BeanshellActivity workflow java.lang.String true in 0 text/plain 0 out 0 text/plain net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokegetJobState_outputinput0net.sf.taverna.t2.activitieswsdl-activity1.0net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLOutputSplitterActivity <s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="getJobStateResponse" name="parameters" qname="{http://farmacie.rug.nl}getJobStateResponse"><s:elements><s:basetype optional="true" unbounded="false" typename="string" name="return" qname="{http://farmacie.rug.nl}&gt;getJobStateResponse&gt;return" /></s:elements></s:complextype></s:extensions> java.lang.String false input 0 'text/xml' 0 return 0 'text/plain' net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeDownloadResultsAuthKey0jobId0resultsZipFile00contents00net.sf.taverna.t2.activitieslocalworker-activity1.0net.sf.taverna.t2.activities.localworker.LocalworkerActivity workflow java.lang.String true AuthKey 0 text/plain java.lang.String true jobId 0 text/plain 0 resultsZipFile 0 0 contents 0 UserNameHere 2009-10-22 15:25:58.943 CEST UserNameHere 2010-11-17 15:57:11.624 CET UserNameHere 2010-10-26 18:00:30.148 CEST UserNameHere 2010-11-17 17:55:41.205 CET UserNameHere 2010-10-25 11:41:18.167 CEST UserNameHere 2010-11-17 18:11:50.709 CET UserNameHere 2010-10-25 11:58:54.682 CEST UserNameHere 2009-10-22 14:47:08.473 CEST UserNameHere 2010-11-17 18:49:34.151 CET UserNameHere 2010-10-25 12:07:09.230 CEST UserNameHere 2010-10-25 11:17:43.860 CEST UserNameHere 2010-11-17 17:34:25.9 CET UserNameHere 2010-11-17 15:54:40.106 CET UserNameHere 2009-10-22 14:46:21.472 CEST UserNameHere 2009-10-22 15:02:37.490 CEST UserNameHere 2009-10-22 14:40:52.134 CEST UserNameHere 2010-10-26 17:18:21.155 CEST UserNameHere 2010-10-26 16:49:18.365 CEST UserNameHere 2009-10-22 13:55:14.643 CEST UserNameHere 2009-10-22 14:08:19.11 CEST UserNameHere 2010-10-26 17:44:07.529 CEST UserNameHere 2010-10-26 16:57:02.992 CEST UserNameHere 2009-10-22 16:44:19.329 CEST UserNameHere 2010-10-26 17:57:38.711 CEST UserNameHere 2009-10-22 14:42:36.687 CEST UserNameHere 2009-10-22 13:58:04.320 CEST UserNameHere 2009-10-22 14:51:01.837 CEST UserNameHere 2009-10-22 14:45:19.396 CEST UserNameHere 2009-10-22 15:24:02.713 CEST UserNameHere 2009-10-22 13:49:39.601 CEST UserNameHere 2009-10-22 15:19:06.290 CEST UserNameHere 2010-10-26 17:11:43.331 CEST UserNameHere 2009-10-22 15:54:18.111 CEST UserNameHere 2010-10-25 11:18:31.244 CEST UserNameHere 2010-10-26 18:06:50.636 CEST UserNameHere 2009-10-22 14:13:45.119 CEST UserNameHere 2010-11-17 18:13:42.936 CET UserNameHere 2009-10-22 15:12:30.449 CEST UserNameHere 2010-10-26 18:08:29.831 CEST UserNameHere 2009-10-22 15:05:39.800 CEST UserNameHere 2009-10-22 15:35:20.933 CEST UserNameHere 2010-10-25 11:45:08.66 CEST UserNameHere 2010-11-17 16:49:23.977 CET UserNameHere 2010-10-26 17:44:42.225 CEST UserNameHere 2009-10-22 16:10:13.88 CEST UserNameHere 2010-10-26 17:42:56.911 CEST UserNameHere 2009-10-22 16:15:07.947 CEST UserNameHere 2009-10-22 14:10:21.417 CEST UserNameHere 2010-11-17 16:01:45.650 CET UserNameHere 2009-10-22 17:37:59.23 CEST UserNameHere 2010-10-25 11:15:56.202 CEST UserNameHere 2009-10-22 14:23:33.13 CEST UserNameHere 2009-10-22 15:12:08.550 CEST UserNameHere 2009-10-22 15:37:23.106 CEST UserNameHere 2010-10-26 16:41:35.54 CEST UserNameHere 2009-10-22 15:36:19.305 CEST UserNameHere 2009-10-22 15:43:06.941 CEST UserNameHere 2009-10-22 14:50:29.145 CEST UserNameHere 2010-11-17 18:48:01.369 CET UserNameHere 2010-10-25 12:05:24.437 CEST UserNameHere 2010-10-26 18:10:14.672 CEST net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeDataUploadref_peaklistFile0samp_peaklistFile0API_Key0refPeaklist_fileRef00sampPeaklist_fileRef00message00net.sf.taverna.t2.activitieslocalworker-activity1.0net.sf.taverna.t2.activities.localworker.LocalworkerActivity workflow java.lang.String true ref_peaklistFile 0 text/plain java.lang.String true samp_peaklistFile 0 text/plain java.lang.String true API_Key 0 text/plain 0 message 0 0 refPeaklist_fileRef 0 0 sampPeaklist_fileRef 0 UserNameHere 2009-10-22 14:40:52.134 CEST UserNameHere 2009-10-22 14:45:19.396 CEST UserNameHere 2009-10-22 15:12:08.550 CEST UserNameHere 2009-10-22 15:36:19.305 CEST UserNameHere 2010-11-17 12:44:27.626 CET UserNameHere 2009-10-22 15:25:58.943 CEST UserNameHere 2009-10-22 15:35:20.933 CEST UserNameHere 2009-10-22 14:13:45.119 CEST UserNameHere 2009-10-22 14:42:36.687 CEST UserNameHere 2009-10-22 15:05:39.800 CEST UserNameHere 2009-10-22 15:37:23.106 CEST UserNameHere 2009-10-22 15:12:30.449 CEST UserNameHere 2009-10-22 16:15:07.947 CEST UserNameHere 2010-11-17 12:39:44.168 CET UserNameHere 2010-11-17 11:21:24.488 CET UserNameHere 2009-10-22 14:50:29.145 CEST UserNameHere 2009-10-22 13:49:39.601 CEST UserNameHere 2009-10-22 14:23:33.13 CEST UserNameHere 2010-11-17 12:26:24.257 CET UserNameHere 2010-11-17 11:34:11.702 CET UserNameHere 2009-10-22 14:51:01.837 CEST UserNameHere 2009-10-22 15:02:37.490 CEST UserNameHere 2009-10-22 15:54:18.111 CEST UserNameHere 2009-10-22 14:47:08.473 CEST UserNameHere 2009-10-22 13:55:14.643 CEST UserNameHere 2009-10-22 15:19:06.290 CEST UserNameHere 2010-11-17 14:48:22.598 CET UserNameHere 2009-10-22 14:46:21.472 CEST UserNameHere 2009-10-22 14:10:21.417 CEST UserNameHere 2010-11-17 11:23:45.311 CET UserNameHere 2010-11-17 16:07:29.256 CET UserNameHere 2010-11-17 12:26:16.25 CET UserNameHere 2010-11-17 12:02:04.596 CET UserNameHere 2009-10-22 15:24:02.713 CEST UserNameHere 2009-10-22 16:44:19.329 CEST UserNameHere 2010-11-17 11:26:21.450 CET UserNameHere 2009-10-22 14:08:19.11 CEST UserNameHere 2009-10-22 15:43:06.941 CEST UserNameHere 2010-11-17 12:41:49.33 CET UserNameHere 2010-11-17 12:29:31.435 CET UserNameHere 2009-10-22 16:10:13.88 CEST UserNameHere 2010-11-17 11:55:09.378 CET UserNameHere 2009-10-22 13:58:04.320 CEST UserNameHere 2009-10-22 17:37:59.23 CEST net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokewarp2Dparameterswarp2D_inputoutputwarp2D_inputAuthKeyAPIKey_valuevaluewarp2D_inputmaxPeaksPerSegmentmaxPeaksPerSegment_valuevaluewarp2D_inputMZwidthMZwidth_valuevaluewarp2D_inputRTwidthRTwidth_valuevaluewarp2D_inputwinSizewinSize_valuevaluewarp2D_inputslackslack_valuevaluewarp2D_inputNTimePointsNTimePoints_valuevaluewarp2D_inputsampShiftsampShift_valuevaluewarp2D_inputoutputWarpedFileNameoutputWarpedFileName_valuevaluewarp2D_inputrefPeakListFileNameDataUploadrefPeaklist_fileRefwarp2D_inputalignPeakListFileNameDataUploadsampPeaklist_fileRefwarp2D_outputinputwarp2DparametersgetJobStateparametersgetJobState_inputoutputgetJobState_inputAuthKeyAPIKey_valuevaluegetJobState_inputjobIdSleepoutSleepinwarp2D_outputreturngetJobState_outputinputgetJobStateparametersDownloadResultsAuthKeyAPIKey_valuevalueDownloadResultsjobIdwarp2D_outputreturnDataUploadref_peaklistFilerefrencePeaklistFileDataUploadsamp_peaklistFilesampPeaklistFileDataUploadAPI_KeyAPIKey_valuevalueMessageDownloadResultscontentsMessageDataUploadmessageResultFileDownloadResultsresultsZipFile Warp2D - 2D Time Alignment 2010-11-17 19:15:34.899 CET Warp2D - 2010-11-17 19:14:55.569 CET Warp2D - 2D Time Alignment 2010-11-17 19:15:06.530 CET Warp2D-2D Time Alignment 2010-11-17 20:56:54.436 CET Warp2D is an efficient, fundamentally new approach to correct for non linear retention time shifts between complex proteomics and metabolomics LC-MS data sets. Warp2D operates on peak lists and use the integral of overlapping peak volume of the reference and sample chromatograms in benefit function with Correlation Optimized Warping algorithm. 2010-11-17 19:16:06.628 CET ISHTIAQ AHMAD 2010-11-17 19:14:11.632 CET