iceLogo
Created: 2010-05-07 13:22:20
Last updated: 2010-05-07 13:23:45
This example workflow creates an iceLogo
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Workflow Components
Authors (2)
Niklaas Colaert |
Paul Fisher |
Titles (2)
iceLogo |
Entrez Gene to KEGG Pathway |
Descriptions (2)
This workflow takes in Entrez gene ids then adds the string "ncbi-geneid:" to the start of each gene id. These gene ids are then cross-referenced to KEGG gene ids. Each KEGG gene id is then sent to the KEGG pathway database and its relevant pathways returned. |
This example workflow creates an iceLogo |
Dependencies (0)
Inputs (8)
Name |
Description |
Pvalue |
|
Height |
|
ScoringType |
|
Yaxis |
|
Width |
|
Species |
|
ExperimentalSet |
|
StartPosition |
|
Processors (4)
Name |
Type |
Description |
getStaticIceLogo |
wsdl |
Wsdlhttp://iomics.ugent.be/icelogoserver/IceLogo.wsdlWsdl OperationgetStaticIceLogo |
getStaticIceLogo_input |
xmlsplitter |
|
ArrayFromString |
beanshell |
ScriptString[] output = input.split("\n");
|
TagReplacer |
beanshell |
ScriptString temp = input.replace("<","<");
temp = temp.replace(">",">");
temp = temp.replace(""","\"");
temp = temp.substring(temp.indexOf(""), temp.indexOf("") + 6);
String output = temp;
|
Beanshells (2)
Name |
Description |
Inputs |
Outputs |
ArrayFromString |
|
input
|
output
|
TagReplacer |
|
input
|
output
|
Datalinks (12)
Source |
Sink |
getStaticIceLogo_input:output |
getStaticIceLogo:parameters |
Pvalue |
getStaticIceLogo_input:lPvalue |
Height |
getStaticIceLogo_input:lHeight |
ScoringType |
getStaticIceLogo_input:lScoringType |
Yaxis |
getStaticIceLogo_input:lYaxis |
Width |
getStaticIceLogo_input:lWidth |
Species |
getStaticIceLogo_input:lSpecies |
StartPosition |
getStaticIceLogo_input:lStartPosition |
ArrayFromString:output |
getStaticIceLogo_input:lExperimentalSet |
ExperimentalSet |
ArrayFromString:input |
getStaticIceLogo:parameters |
TagReplacer:input |
TagReplacer:output |
Result |
Uploader
License
All versions of this Workflow are
licensed under:
Version 1
(of 1)
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