Uniprot Protein Visualization

Created: 2010-05-01 20:29:37      Last updated: 2010-05-01 20:40:10

Jmol 3D visualization of a protein structure.

Information Preview

Information Run

Run this Workflow in the Taverna Workbench...

Option 1:

Copy and paste this link into File > 'Open workflow location...'
[ More InfoExpand ]

Information Workflow Components

Information Authors (1)
Information Titles (2)
Information Descriptions (1)
Information Dependencies (0)
Inputs (0)
Processors (6)
Beanshells (2)
Outputs (1)
Datalinks (6)
Coordinations (0)

Information Workflow Type

Taverna 2

Information Uploader

Information License

All versions of this Workflow are licensed under:

Information Version 1 (of 1)

Information Credits (0)



Information Attributions (0)



Information Tags (3)

Log in to add Tags

Information Shared with Groups (1)

Information Featured In Packs (0)


Log in to add to one of your Packs

Information Attributed By (0)



Information Favourited By (1)

Information Statistics


Citations (0)


Version History

In chronological order:

Reviews Reviews (2)


Review Title: Service unavailable

Rating: not yet rated

Created: 2015-07-29 09:36:53 | Updated: 2015-07-29 09:36:53

I just found that UniProt-to-PDB and renderProteinStructure is not working.How can I fix it or use other services instead?Best Regards,Kasikrit

[ more ]

Show View

Review Title: Ideas for extension of the workflow

Rating: 5 out of 5

Created: 2011-02-17 19:49:14 | Updated: 2011-02-17 19:50:28

works exactly as indicated.  Input is the UniProt ID of any protein of interest.  To extend this workflow futher, you can add the SADI KEGG Pathway -> KEGG Genes service, then KEGG Genes -> UniProt IDs service.  This will then give you the jMol visualization of all of the proteins in a given pathway. Very very cool :-) 

[ more ]

Show View

Comments Comments (1)

Log in to make a comment

  • Sunday 21 August 2011 23:05:43 (UTC)

     thats impressive

Workflow Other workflows that use similar services (0)

There are no workflows in myExperiment that use similar services to this Workflow.