Genes_encoded_by_KEGG_pathwayKEGG_pathway11 A KEGG pathway id 2010-04-29 16:54:09.958 PDT hsa00232 2010-04-29 16:53:58.447 PDT geneproteinsequencegetKEGGGenesByPathwayKEGG_PATHWAY_Record1hasPathwayGene (KEGG_Record)22net.sf.taverna.t2.activitiessadi-activity0.2.0net.sf.taverna.t2.activities.sadi.SADIActivity http://biordf.net/sparql http://sadiframework.org/registry/ http://sadiframework.org/services/getKEGGGenesByPathway KEGG_PATHWAY_Record getKEGGGenesByPathway_Output hasPathwayGene (KEGG_Record) net.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1net.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0net.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokegetUniprotByKeggGeneKEGG_Record1encodes (UniProt_Record)22net.sf.taverna.t2.activitiessadi-activity0.2.0net.sf.taverna.t2.activities.sadi.SADIActivity http://biordf.net/sparql http://sadiframework.org/registry/ http://dev.biordf.net/~kawas/cgi-bin/getUniprotByKeggGene KEGG_Record UniprotByKeggGeneOutputClass encodes (UniProt_Record) net.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1net.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0net.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeUniProt infoUniProt_Record1hasSequence (string)22net.sf.taverna.t2.activitiessadi-activity0.2.0net.sf.taverna.t2.activities.sadi.SADIActivity http://biordf.net/sparql http://sadiframework.org/registry/ http://sadiframework.org/examples/uniprotInfo UniProt_Record AnnotatedUniProtRecord hasSequence (string) AnnotatedUniProtRecord belongsToOrganism (string) AnnotatedUniProtRecord hasName (string) net.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1net.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0net.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokegetKEGGGenesByPathwayKEGG_PATHWAY_RecordKEGG_pathwaygetUniprotByKeggGeneKEGG_RecordgetKEGGGenesByPathwayhasPathwayGene (KEGG_Record)UniProt infoUniProt_RecordgetUniprotByKeggGeneencodes (UniProt_Record)genegetKEGGGenesByPathwayhasPathwayGene (KEGG_Record)proteingetUniprotByKeggGeneencodes (UniProt_Record)sequenceUniProt infohasSequence (string) What genes are involved in KEGG pathway "hsa00232"? What proteins do those genes code for? What are the sequences of those proteins? 2010-04-28 16:33:06.160 PDT David WIthers 2010-04-28 16:32:21.499 PDT Genes encoded by KEGG pathway 2010-04-28 16:33:41.552 PDT Takes a KEGG pathway (e.g. hsa00232), finds the proteins that those genes code for and returns the sequences of those proteins. 2010-04-28 17:12:45.435 PDT Takes a KEGG pathway (e.g. hsa00232"), finds the proteins that those genes code for and returns the sequences of those proteins. 2010-04-28 16:34:49.839 PDT