Genes encoded by KEGG pathway

Created: 2010-04-30 20:56:06 Last updated: 2010-05-01 20:42:27

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Takes a KEGG pathway (e.g. hsa00232), finds the proteins that those genes code for and returns the sequences of those proteins.

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Authors (1)

Titles (1)

Descriptions (3)

Dependencies (0)

Inputs (1)

Name	Description
KEGG_pathway	A KEGG pathway id

Processors (3)

Name	Type	Description
getKEGGGenesByPathway	sadi	Endpoint http://biordf.net/sparql
getUniprotByKeggGene	sadi	Endpoint http://biordf.net/sparql
UniProt info	sadi	Endpoint http://biordf.net/sparql

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Outputs (3)

Name	Description
gene
protein
sequence

Datalinks (6)

Source	Sink
KEGG_pathway	getKEGGGenesByPathway:KEGG_PATHWAY_Record
getKEGGGenesByPathway:hasPathwayGene (KEGG_Record)	getUniprotByKeggGene:KEGG_Record
getUniprotByKeggGene:encodes (UniProt_Record)	UniProt info:UniProt_Record
getKEGGGenesByPathway:hasPathwayGene (KEGG_Record)	gene
getUniprotByKeggGene:encodes (UniProt_Record)	protein
UniProt info:hasSequence (string)	sequence

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Taverna 2

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David Withers

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Genes encoded by KEGG pathway

Created by David Withers on Friday 30 April 2010 20:56:06 (UTC)

Last edited by David Withers on Saturday 01 May 2010 20:42:28 (UTC)