ChEBI_mashup_from_searched_stringsearched_string00
A demo showing hoe to use SOAP services from Bio2RDF ChEBI SPARQL endpoint.
2010-04-29 08:59:19.368 EDT
fructose
2010-04-29 09:07:24.575 EDT
keto-d-fructose
2010-04-29 08:58:43.608 EDT
fructose
2010-04-26 20:35:15.202 EDT
search for fructose or keto-d-fructose or whatever you like.
2010-04-29 09:08:12.977 EDT
2010-04-29 08:59:28.436 EDT
o1o2o3o4o5ntriplesChEBI_Describeparameters0parameters00net.sf.taverna.t2.activitieswsdl-activity1.1net.sf.taverna.t2.activities.wsdl.WSDLActivity
http://quebec.chebi.bio2rdf.org/wsdl
ChEBI_Describe
net.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeChEBI_Describe_inputbm_uri0output00net.sf.taverna.t2.activitieswsdl-activity1.1net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLInputSplitterActivity
<s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="ChEBI_Describe" name="parameters" qname="{services.wsdl}ChEBI_Describe"><s:elements><s:basetype optional="false" unbounded="false" typename="string" name="bm_uri" qname=">ChEBI_Describe>bm_uri" /></s:elements></s:complextype></s:extensions>
false
bm_uri
0
'text/plain'
0
output
0
'text/xml'
net.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeChEBI_Describe_outputinput0CallReturn00net.sf.taverna.t2.activitieswsdl-activity1.1net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLOutputSplitterActivity
<s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="ChEBI_DescribeResponse" name="parameters" qname="{services.wsdl}ChEBI_DescribeResponse"><s:elements><s:basetype optional="false" unbounded="false" typename="string" name="CallReturn" qname=">ChEBI_DescribeResponse>CallReturn" /></s:elements></s:complextype></s:extensions>
java.lang.String
false
input
0
'text/xml'
0
CallReturn
0
'text/plain'
net.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeChEBI_Linkparameters0parameters00net.sf.taverna.t2.activitieswsdl-activity1.1net.sf.taverna.t2.activities.wsdl.WSDLActivity
http://quebec.chebi.bio2rdf.org/wsdl
ChEBI_Link
net.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeChEBI_Link_inputbm_uri0output00net.sf.taverna.t2.activitieswsdl-activity1.1net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLInputSplitterActivity
<s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="ChEBI_Link" name="parameters" qname="{services.wsdl}ChEBI_Link"><s:elements><s:basetype optional="false" unbounded="false" typename="string" name="bm_uri" qname=">ChEBI_Link>bm_uri" /></s:elements></s:complextype></s:extensions>
false
bm_uri
0
'text/plain'
0
output
0
'text/xml'
net.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeChEBI_Link_outputinput0CallReturn00net.sf.taverna.t2.activitieswsdl-activity1.1net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLOutputSplitterActivity
<s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="ChEBI_LinkResponse" name="parameters" qname="{services.wsdl}ChEBI_LinkResponse"><s:elements><s:basetype optional="false" unbounded="false" typename="string" name="CallReturn" qname=">ChEBI_LinkResponse>CallReturn" /></s:elements></s:complextype></s:extensions>
java.lang.String
false
input
0
'text/xml'
0
CallReturn
0
'text/plain'
net.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeChEBI_Searchparameters0parameters00net.sf.taverna.t2.activitieswsdl-activity1.1net.sf.taverna.t2.activities.wsdl.WSDLActivity
http://quebec.chebi.bio2rdf.org/wsdl
ChEBI_Search
net.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeChEBI_Search_inputquery_text0output00net.sf.taverna.t2.activitieswsdl-activity1.1net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLInputSplitterActivity
<s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="ChEBI_Search" name="parameters" qname="{services.wsdl}ChEBI_Search"><s:elements><s:basetype optional="false" unbounded="false" typename="string" name="query_text" qname=">ChEBI_Search>query_text" /></s:elements></s:complextype></s:extensions>
false
query_text
0
'text/plain'
0
output
0
'text/xml'
net.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeChEBI_Search_outputinput0CallReturn00net.sf.taverna.t2.activitieswsdl-activity1.1net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLOutputSplitterActivity
<s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="ChEBI_SearchResponse" name="parameters" qname="{services.wsdl}ChEBI_SearchResponse"><s:elements><s:basetype optional="false" unbounded="false" typename="string" name="CallReturn" qname=">ChEBI_SearchResponse>CallReturn" /></s:elements></s:complextype></s:extensions>
java.lang.String
false
input
0
'text/xml'
0
CallReturn
0
'text/plain'
net.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeMerge_String_List_to_a_Stringstringlist1concatenated00net.sf.taverna.t2.activitieslocalworker-activity1.1net.sf.taverna.t2.activities.localworker.LocalworkerActivity
org.embl.ebi.escience.scuflworkers.java.StringListMerge
workflow
java.lang.String
true
stringlist
1
l('text/plain')
java.lang.String
true
seperator
0
'text/plain'
0
concatenated
0
'text/plain'
net.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokentriples2subjectsntriples0bmuri_list11net.sf.taverna.t2.activitiesdataflow-activity1.1net.sf.taverna.t2.activities.dataflow.DataflowActivitynet.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokentriples2subjects_2ntriples0bmuri_list11net.sf.taverna.t2.activitiesdataflow-activity1.1net.sf.taverna.t2.activities.dataflow.DataflowActivitynet.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeFlatten_Listinputlist2outputlist11net.sf.taverna.t2.activitieslocalworker-activity1.1net.sf.taverna.t2.activities.localworker.LocalworkerActivity
org.embl.ebi.escience.scuflworkers.java.FlattenList
workflow
[B
true
inputlist
2
l(l(''))
1
outputlist
1
l('')
net.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeMerge_String_List_to_a_String_2stringlist1concatenated00net.sf.taverna.t2.activitieslocalworker-activity1.1net.sf.taverna.t2.activities.localworker.LocalworkerActivity
org.embl.ebi.escience.scuflworkers.java.StringListMerge
workflow
java.lang.String
true
stringlist
1
l('text/plain')
java.lang.String
true
seperator
0
'text/plain'
0
concatenated
0
'text/plain'
net.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeChEBI_DescribeparametersChEBI_Describe_inputbm_uriChEBI_Describe_outputinputChEBI_LinkparametersChEBI_Link_inputbm_uriChEBI_Link_outputinputChEBI_SearchparametersChEBI_Search_inputquery_textChEBI_Search_outputinputMerge_String_List_to_a_Stringstringlistntriples2subjectsntriplesntriples2subjects_2ntriplesMerge_String_List_to_a_String_2stringlistFlatten_ListinputlistFlatten_Listinputlisto1o2o3o4o5ntriples
FrancoisBelleau@yahoo.ca
member of the Bio2RDF community.
2010-04-29 09:03:38.521 EDT
A demo showing hoe to use SOAP services from Bio2RDF ChEBI SPARQL endpoint.
2010-04-29 08:59:43.61 EDT
ChEBI mashup from searched string
2010-04-26 23:56:32.655 EDT
FracoisBelleau@yahoo.ca
2010-04-26 23:55:39.386 EDT
A demo showing hoe to use SOAP services from Bio2RDF ChEBI SPARQL endpoint.
First a full text search query is done, then we do a reverse link query to get all the related topic. Finally with a describe queries we obtain the complete graph of each topic.
The ntriples result is a mashup of what is known about this searched topic form ChEBI. This graph can then be loaded in a triplestore for further exploration.
2010-04-29 09:03:13.128 EDT
FrancoisBelleau@yahoo.ca
2010-04-29 09:00:23.700 EDT
Workflow6ntriples00
<http://bio2rdf.org/chebi:4119> <http://www.w3.org/2000/01/rdf-schema#seeAlso> <http://bio2rdf.org/chebi:48095> .
<http://bio2rdf.org/chebi:47424> <http://www.w3.org/2000/01/rdf-schema#seeAlso> <http://bio2rdf.org/chebi:48095> .
<http://bio2rdf.org/chebi:11175> <http://www.w3.org/2000/01/rdf-schema#seeAlso> <http://bio2rdf.org/chebi:16715> .
<http://bio2rdf.org/chebi:549> <http://www.w3.org/2000/01/rdf-schema#seeAlso> <http://bio2rdf.org/chebi:16715> .
<http://bio2rdf.org/chebi:18942> <http://www.w3.org/2000/01/rdf-schema#seeAlso> <http://bio2rdf.org/chebi:16715> .
<http://bio2rdf.org/chebi:24855> <http://www.w3.org/2000/01/rdf-schema#seeAlso> <http://bio2rdf.org/chebi:16751> .
<http://bio2rdf.org/chebi:5943> <http://www.w3.org/2000/01/rdf-schema#seeAlso> <http://bio2rdf.org/chebi:16751> .
<http://bio2rdf.org/chebi:14459> <http://www.w3.org/2000/01/rdf-schema#seeAlso> <http://bio2rdf.org/chebi:16751> .
<http://bio2rdf.org/chebi:4120> <http://www.w3.org/2000/01/rdf-schema#seeAlso> <http://bio2rdf.org/chebi:16905> .
<http://bio2rdf.org/chebi:12924> <http://www.w3.org/2000/01/rdf-schema#seeAlso> <http://bio2rdf.org/chebi:16905> .
<http://bio2rdf.org/chebi:2050> <http://www.w3.org/2000/01/rdf-schema#seeAlso> <http://bio2rdf.org/chebi:17011> .
<http://bio2rdf.org/chebi:12119> <http://www.w3.org/2000/01/rdf-schema#seeAlso> <http://bio2rdf.org/chebi:17011> .
<http://bio2rdf.org/chebi:20563> <http://www.w3.org/2000/01/rdf-schema#seeAlso> <http://bio2rdf.org/chebi:17011> .
<http://bio2rdf.org/chebi:12925> <http://www.w3.org/2000/01/rdf-schema#seeAlso> <http://bio2rdf.org/chebi:18105> .
<http://bio2rdf.org/chebi:5173> <http://www.w3.org/2000/01/rdf-schema#seeAlso> <http://bio2rdf.org/chebi:18105> .
<http://bio2rdf.org/chebi:4121> <http://www.w3.org/2000/01/rdf-schema#seeAlso> <http://bio2rdf.org/chebi:18105> .
<http://bio2rdf.org/chebi:20932> <http://www.w3.org/2000/01/rdf-schema#seeAlso> <http://bio2rdf.org/chebi:18105> .
<http://bio2rdf.org/chebi:22895> <http://www.w3.org/2000/01/rdf-schema#seeAlso> <http://bio2rdf.org/chebi:17618> .
<http://bio2rdf.org/chebi:13915> <http://www.w3.org/2000/01/rdf-schema#seeAlso> <http://bio2rdf.org/chebi:17618> .
<http://bio2rdf.org/chebi:3123> <http://www.w3.org/2000/01/rdf-schema#seeAlso> <http://bio2rdf.org/chebi:17618> .
<http://bio2rdf.org/chebi:21290> <http://www.w3.org/2000/01/rdf-schema#seeAlso> <http://bio2rdf.org/chebi:28120> .
<http://bio2rdf.org/chebi:6216> <http://www.w3.org/2000/01/rdf-schema#seeAlso> <http://bio2rdf.org/chebi:28120> .
<http://bio2rdf.org/chebi:4124> <http://www.w3.org/2000/01/rdf-schema#seeAlso> <http://bio2rdf.org/chebi:15946> .
<http://bio2rdf.org/chebi:12926> <http://www.w3.org/2000/01/rdf-schema#seeAlso> <http://bio2rdf.org/chebi:15946> .
<http://bio2rdf.org/chebi:20935> <http://www.w3.org/2000/01/rdf-schema#seeAlso> <http://bio2rdf.org/chebi:15946> .
<http://bio2rdf.org/chebi:24110> <http://www.w3.org/2000/01/rdf-schema#seeAlso> <http://bio2rdf.org/chebi:28757> .
<http://bio2rdf.org/chebi:5172> <http://www.w3.org/2000/01/rdf-schema#seeAlso> <http://bio2rdf.org/chebi:28757> .
<http://bio2rdf.org/chebi:24104> <http://www.w3.org/2000/01/rdf-schema#seeAlso> <http://bio2rdf.org/chebi:28757> .
<http://bio2rdf.org/chebi:4122> <http://www.w3.org/2000/01/rdf-schema#seeAlso> <http://bio2rdf.org/chebi:28602> .
<http://bio2rdf.org/chebi:20933> <http://www.w3.org/2000/01/rdf-schema#seeAlso> <http://bio2rdf.org/chebi:28602> .
<http://bio2rdf.org/chebi:12351> <http://www.w3.org/2000/01/rdf-schema#seeAlso> <http://bio2rdf.org/chebi:28602> .
<http://bio2rdf.org/chebi:42586> <http://www.w3.org/2000/01/rdf-schema#seeAlso> <http://bio2rdf.org/chebi:28602> .
<http://bio2rdf.org/chebi:12923> <http://www.w3.org/2000/01/rdf-schema#seeAlso> <http://bio2rdf.org/chebi:15824> .
<http://bio2rdf.org/chebi:4118> <http://www.w3.org/2000/01/rdf-schema#seeAlso> <http://bio2rdf.org/chebi:15824> .
<http://bio2rdf.org/chebi:20929> <http://www.w3.org/2000/01/rdf-schema#seeAlso> <http://bio2rdf.org/chebi:15824> .
2010-04-26 23:16:38.28 EDT
fructose
2010-04-26 20:35:15.202 EDT
bmuri_listSplit_string_into_string_list_by_regular_expressionregex0string0split11net.sf.taverna.t2.activitieslocalworker-activity1.1net.sf.taverna.t2.activities.localworker.LocalworkerActivity
org.embl.ebi.escience.scuflworkers.java.SplitByRegex
workflow
java.lang.String
true
string
0
'text/plain'
java.lang.String
true
regex
0
'text/plain'
1
split
1
l('text/plain')
net.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokeeolvalue00net.sf.taverna.t2.activitiesstringconstant-activity1.1net.sf.taverna.t2.activities.stringconstant.StringConstantActivity
\n
net.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeFilter_list_of_strings_extracting_match_to_a_regexstringlist1group0regex0filteredlist11net.sf.taverna.t2.activitieslocalworker-activity1.1net.sf.taverna.t2.activities.localworker.LocalworkerActivity
org.embl.ebi.escience.scuflworkers.java.RegularExpressionStringList
workflow
java.lang.String
true
stringlist
1
l('text/plain')
java.lang.String
true
regex
0
'text/plain'
java.lang.String
true
group
0
'text/plain'
1
filteredlist
1
l('text/plain')
net.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invoke_1value00net.sf.taverna.t2.activitiesstringconstant-activity1.1net.sf.taverna.t2.activities.stringconstant.StringConstantActivity
1
net.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokeget_subject_regexvalue00net.sf.taverna.t2.activitiesstringconstant-activity1.1net.sf.taverna.t2.activities.stringconstant.StringConstantActivity
<(.*?)> <.*
net.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeRemove_String_Duplicatesstringlist1strippedlist11net.sf.taverna.t2.activitieslocalworker-activity1.1net.sf.taverna.t2.activities.localworker.LocalworkerActivity
org.embl.ebi.escience.scuflworkers.java.StringStripDuplicates
workflow
java.lang.String
true
stringlist
1
l('text/plain')
1
strippedlist
1
l('text/plain')
net.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeSplit_string_into_string_list_by_regular_expressionregexSplit_string_into_string_list_by_regular_expressionstringFilter_list_of_strings_extracting_match_to_a_regexstringlistFilter_list_of_strings_extracting_match_to_a_regexgroupFilter_list_of_strings_extracting_match_to_a_regexregexRemove_String_Duplicatesstringlistbmuri_list
FrancoisBelleau@yahoo.ca
2010-04-26 23:19:14.542 EDT
ntriples2subject___Extract_the_subject_list_from_ntriplesntriples00
<http://bio2rdf.org/chebi:4119> <http://www.w3.org/2000/01/rdf-schema#seeAlso> <http://bio2rdf.org/chebi:48095> .
<http://bio2rdf.org/chebi:47424> <http://www.w3.org/2000/01/rdf-schema#seeAlso> <http://bio2rdf.org/chebi:48095> .
<http://bio2rdf.org/chebi:11175> <http://www.w3.org/2000/01/rdf-schema#seeAlso> <http://bio2rdf.org/chebi:16715> .
<http://bio2rdf.org/chebi:549> <http://www.w3.org/2000/01/rdf-schema#seeAlso> <http://bio2rdf.org/chebi:16715> .
<http://bio2rdf.org/chebi:18942> <http://www.w3.org/2000/01/rdf-schema#seeAlso> <http://bio2rdf.org/chebi:16715> .
<http://bio2rdf.org/chebi:24855> <http://www.w3.org/2000/01/rdf-schema#seeAlso> <http://bio2rdf.org/chebi:16751> .
<http://bio2rdf.org/chebi:5943> <http://www.w3.org/2000/01/rdf-schema#seeAlso> <http://bio2rdf.org/chebi:16751> .
<http://bio2rdf.org/chebi:14459> <http://www.w3.org/2000/01/rdf-schema#seeAlso> <http://bio2rdf.org/chebi:16751> .
<http://bio2rdf.org/chebi:4120> <http://www.w3.org/2000/01/rdf-schema#seeAlso> <http://bio2rdf.org/chebi:16905> .
<http://bio2rdf.org/chebi:12924> <http://www.w3.org/2000/01/rdf-schema#seeAlso> <http://bio2rdf.org/chebi:16905> .
<http://bio2rdf.org/chebi:2050> <http://www.w3.org/2000/01/rdf-schema#seeAlso> <http://bio2rdf.org/chebi:17011> .
<http://bio2rdf.org/chebi:12119> <http://www.w3.org/2000/01/rdf-schema#seeAlso> <http://bio2rdf.org/chebi:17011> .
<http://bio2rdf.org/chebi:20563> <http://www.w3.org/2000/01/rdf-schema#seeAlso> <http://bio2rdf.org/chebi:17011> .
<http://bio2rdf.org/chebi:12925> <http://www.w3.org/2000/01/rdf-schema#seeAlso> <http://bio2rdf.org/chebi:18105> .
<http://bio2rdf.org/chebi:5173> <http://www.w3.org/2000/01/rdf-schema#seeAlso> <http://bio2rdf.org/chebi:18105> .
<http://bio2rdf.org/chebi:4121> <http://www.w3.org/2000/01/rdf-schema#seeAlso> <http://bio2rdf.org/chebi:18105> .
<http://bio2rdf.org/chebi:20932> <http://www.w3.org/2000/01/rdf-schema#seeAlso> <http://bio2rdf.org/chebi:18105> .
<http://bio2rdf.org/chebi:22895> <http://www.w3.org/2000/01/rdf-schema#seeAlso> <http://bio2rdf.org/chebi:17618> .
<http://bio2rdf.org/chebi:13915> <http://www.w3.org/2000/01/rdf-schema#seeAlso> <http://bio2rdf.org/chebi:17618> .
<http://bio2rdf.org/chebi:3123> <http://www.w3.org/2000/01/rdf-schema#seeAlso> <http://bio2rdf.org/chebi:17618> .
<http://bio2rdf.org/chebi:21290> <http://www.w3.org/2000/01/rdf-schema#seeAlso> <http://bio2rdf.org/chebi:28120> .
<http://bio2rdf.org/chebi:6216> <http://www.w3.org/2000/01/rdf-schema#seeAlso> <http://bio2rdf.org/chebi:28120> .
<http://bio2rdf.org/chebi:4124> <http://www.w3.org/2000/01/rdf-schema#seeAlso> <http://bio2rdf.org/chebi:15946> .
<http://bio2rdf.org/chebi:12926> <http://www.w3.org/2000/01/rdf-schema#seeAlso> <http://bio2rdf.org/chebi:15946> .
<http://bio2rdf.org/chebi:20935> <http://www.w3.org/2000/01/rdf-schema#seeAlso> <http://bio2rdf.org/chebi:15946> .
<http://bio2rdf.org/chebi:24110> <http://www.w3.org/2000/01/rdf-schema#seeAlso> <http://bio2rdf.org/chebi:28757> .
<http://bio2rdf.org/chebi:5172> <http://www.w3.org/2000/01/rdf-schema#seeAlso> <http://bio2rdf.org/chebi:28757> .
<http://bio2rdf.org/chebi:24104> <http://www.w3.org/2000/01/rdf-schema#seeAlso> <http://bio2rdf.org/chebi:28757> .
<http://bio2rdf.org/chebi:4122> <http://www.w3.org/2000/01/rdf-schema#seeAlso> <http://bio2rdf.org/chebi:28602> .
<http://bio2rdf.org/chebi:20933> <http://www.w3.org/2000/01/rdf-schema#seeAlso> <http://bio2rdf.org/chebi:28602> .
<http://bio2rdf.org/chebi:12351> <http://www.w3.org/2000/01/rdf-schema#seeAlso> <http://bio2rdf.org/chebi:28602> .
<http://bio2rdf.org/chebi:42586> <http://www.w3.org/2000/01/rdf-schema#seeAlso> <http://bio2rdf.org/chebi:28602> .
<http://bio2rdf.org/chebi:12923> <http://www.w3.org/2000/01/rdf-schema#seeAlso> <http://bio2rdf.org/chebi:15824> .
<http://bio2rdf.org/chebi:4118> <http://www.w3.org/2000/01/rdf-schema#seeAlso> <http://bio2rdf.org/chebi:15824> .
<http://bio2rdf.org/chebi:20929> <http://www.w3.org/2000/01/rdf-schema#seeAlso> <http://bio2rdf.org/chebi:15824> .
2010-04-26 23:16:38.28 EDT
fructose
2010-04-26 20:35:15.202 EDT
bmuri_listSplit_string_into_string_list_by_regular_expressionregex0string0split11net.sf.taverna.t2.activitieslocalworker-activity1.1net.sf.taverna.t2.activities.localworker.LocalworkerActivity
org.embl.ebi.escience.scuflworkers.java.SplitByRegex
workflow
java.lang.String
true
string
0
'text/plain'
java.lang.String
true
regex
0
'text/plain'
1
split
1
l('text/plain')
net.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokeeolvalue00net.sf.taverna.t2.activitiesstringconstant-activity1.1net.sf.taverna.t2.activities.stringconstant.StringConstantActivity
\n
net.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeFilter_list_of_strings_extracting_match_to_a_regexstringlist1group0regex0filteredlist11net.sf.taverna.t2.activitieslocalworker-activity1.1net.sf.taverna.t2.activities.localworker.LocalworkerActivity
org.embl.ebi.escience.scuflworkers.java.RegularExpressionStringList
workflow
java.lang.String
true
stringlist
1
l('text/plain')
java.lang.String
true
regex
0
'text/plain'
java.lang.String
true
group
0
'text/plain'
1
filteredlist
1
l('text/plain')
net.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invoke_1value00net.sf.taverna.t2.activitiesstringconstant-activity1.1net.sf.taverna.t2.activities.stringconstant.StringConstantActivity
1
net.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokeget_subject_regexvalue00net.sf.taverna.t2.activitiesstringconstant-activity1.1net.sf.taverna.t2.activities.stringconstant.StringConstantActivity
<(.*?)> <.*
net.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeRemove_String_Duplicatesstringlist1strippedlist11net.sf.taverna.t2.activitieslocalworker-activity1.1net.sf.taverna.t2.activities.localworker.LocalworkerActivity
org.embl.ebi.escience.scuflworkers.java.StringStripDuplicates
workflow
java.lang.String
true
stringlist
1
l('text/plain')
1
strippedlist
1
l('text/plain')
net.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeSplit_string_into_string_list_by_regular_expressionregexSplit_string_into_string_list_by_regular_expressionstringFilter_list_of_strings_extracting_match_to_a_regexstringlistFilter_list_of_strings_extracting_match_to_a_regexgroupFilter_list_of_strings_extracting_match_to_a_regexregexRemove_String_Duplicatesstringlistbmuri_list
FrancoisBelleau@yahoo.ca
2010-04-26 23:19:14.542 EDT
ntriples2subject - Extract the subject list from ntriples
2010-04-26 23:19:53.822 EDT