SBML_model_parameterisationsbml00
A qualitative SBML model generated by workflow 1
2010-03-25 17:13:54.158 GMT
<?xml version="1.0" encoding="UTF-8"?>
<sbml xmlns="http://www.sbml.org/sbml/level2/version3" level="2" version="3">
<model id="Taverna1" name="Test model">
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<unitDefinition id="U/mg" name="U/mg">
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<unit kind="katal" scale="-9" multiplier="16.6669998168945"/>
<unit kind="gram" exponent="-1" scale="-3"/>
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</unitDefinition>
<unitDefinition id="U/ml" name="U/ml">
<listOfUnits>
<unit kind="katal" scale="-9" multiplier="16.6669998168945"/>
<unit kind="litre" exponent="-1" scale="-3"/>
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</unitDefinition>
<unitDefinition id="mM" name="millimolar">
<listOfUnits>
<unit kind="litre" exponent="-1"/>
<unit kind="mole" scale="-3"/>
</listOfUnits>
</unitDefinition>
<unitDefinition id="micromolar" name="micromolar">
<listOfUnits>
<unit kind="litre" exponent="-1"/>
<unit kind="mole" scale="-6"/>
</listOfUnits>
</unitDefinition>
<unitDefinition id="per_second" name="per_second">
<listOfUnits>
<unit kind="second" exponent="-1"/>
</listOfUnits>
</unitDefinition>
</listOfUnitDefinitions>
<listOfCompartments>
<compartment metaid="meta_C_1" id="C_1" name="Cytoplasm" size="1" outside="C_10" sboTerm="SBO:0000290">
<annotation>
<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
<rdf:Description rdf:about="#meta_C_1">
<bqbiol:is>
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<rdf:li rdf:resource="urn:miriam:obo.go:GO:0005737"/>
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</compartment>
<compartment metaid="meta_C_10" id="C_10" name="Plasma membrane" size="1" outside="C_2" sboTerm="SBO:0000290">
<annotation>
<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
<rdf:Description rdf:about="#meta_C_10">
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<compartment metaid="meta_C_2" id="C_2" name="Extracellular" size="1" sboTerm="SBO:0000290">
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<rdf:Description rdf:about="#meta_C_2">
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<listOfSpecies>
<species metaid="meta_M_276" id="M_276" name="D-Fructose 1,6-bisphosphate" compartment="C_1" initialConcentration="0" sboTerm="SBO:0000299">
<annotation>
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<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
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<rdf:li rdf:resource="#meta_M_276"/>
<rdf:li rdf:resource="urn:miriam:obo.chebi:CHEBI:16905"/>
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<species metaid="meta_M_172" id="M_172" name="ATP" compartment="C_1" initialConcentration="3.5" sboTerm="SBO:0000299">
<annotation>
<in:inchi xmlns:in="http://biomodels.net/inchi" metaid="meta_M_172_inchi">InChI=1/C10H16N5O13P3/c11-8-5-9(13-2-12-8)15(3-14-5)10-7(17)6(16)4(26-10)1-25-30(21,22)28-31(23,24)27-29(18,19)20/h2-4,6-7,10,16-17H,1H2,(H,21,22)(H,23,24)(H2,11,12,13)(H2,18,19,20)/t4-,6-,7-,10-/m1/s1/f/h18-19,21,23H,11H2</in:inchi>
<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
<rdf:Description rdf:about="#meta_M_172">
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<rdf:Bag>
<rdf:li rdf:resource="#meta_M_172"/>
<rdf:li rdf:resource="urn:miriam:obo.chebi:CHEBI:15422"/>
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<species metaid="meta_M_273" id="M_273" name="D-Fructose 6-phosphate" compartment="C_1" initialConcentration="0" sboTerm="SBO:0000299">
<annotation>
<in:inchi xmlns:in="http://biomodels.net/inchi" metaid="meta_M_273_inchi">InChI=1/C6H13O9P/c7-1-3(8)5(10)6(11)4(9)2-15-16(12,13)14/h4-7,9-11H,1-2H2,(H2,12,13,14)/t4-,5-,6-/m1/s1</in:inchi>
<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
<rdf:Description rdf:about="#meta_M_273">
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<rdf:Bag>
<rdf:li rdf:resource="#meta_M_273"/>
<rdf:li rdf:resource="urn:miriam:obo.chebi:CHEBI:15946"/>
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</annotation>
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<species metaid="meta_M_292" id="M_292" name="D-Glucose 6-phosphate" compartment="C_1" initialConcentration="0" sboTerm="SBO:0000299">
<annotation>
<in:inchi xmlns:in="http://biomodels.net/inchi" metaid="meta_M_292_inchi">InChI=1/C6H13O9P/c7-1-3(8)5(10)6(11)4(9)2-15-16(12,13)14/h1,3-6,8-11H,2H2,(H2,12,13,14)/t3-,4+,5+,6+/m0/s1</in:inchi>
<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
<rdf:Description rdf:about="#meta_M_292">
<bqbiol:is>
<rdf:Bag>
<rdf:li rdf:resource="#meta_M_292"/>
<rdf:li rdf:resource="urn:miriam:obo.chebi:CHEBI:15954"/>
</rdf:Bag>
</bqbiol:is>
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</annotation>
</species>
<species metaid="meta_M_4" id="M_4" name="3-Phospho-D-glyceroyl phosphate" compartment="C_1" initialConcentration="0" sboTerm="SBO:0000299">
<annotation>
<in:inchi xmlns:in="http://biomodels.net/inchi" metaid="meta_M_4_inchi">InChI=1/C3H8O10P2/c4-2(1-12-14(6,7)8)3(5)13-15(9,10)11/h2,4H,1H2,(H2,6,7,8)(H2,9,10,11)/t2-/m1/s1</in:inchi>
<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
<rdf:Description rdf:about="#meta_M_4">
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<rdf:Bag>
<rdf:li rdf:resource="#meta_M_4"/>
<rdf:li rdf:resource="urn:miriam:obo.chebi:CHEBI:16001"/>
</rdf:Bag>
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<species metaid="meta_M_135" id="M_135" name="ADP" compartment="C_1" initialConcentration="0" sboTerm="SBO:0000299">
<annotation>
<in:inchi xmlns:in="http://biomodels.net/inchi" metaid="meta_M_135_inchi">InChI=1/C10H15N5O10P2/c11-8-5-9(13-2-12-8)15(3-14-5)10-7(17)6(16)4(24-10)1-23-27(21,22)25-26(18,19)20/h2-4,6-7,10,16-17H,1H2,(H,21,22)(H2,11,12,13)(H2,18,19,20)/t4-,6-,7-,10-/m1/s1/f/h18-19,21H,11H2</in:inchi>
<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
<rdf:Description rdf:about="#meta_M_135">
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<rdf:Bag>
<rdf:li rdf:resource="#meta_M_135"/>
<rdf:li rdf:resource="urn:miriam:obo.chebi:CHEBI:16761"/>
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</rdf:RDF>
</annotation>
</species>
<species metaid="meta_M_36" id="M_36" name="D-Glycerate 2-phosphate" compartment="C_1" initialConcentration="0" sboTerm="SBO:0000299">
<annotation>
<in:inchi xmlns:in="http://biomodels.net/inchi" metaid="meta_M_36_inchi">InChI=1/C3H7O7P/c4-1-2(3(5)6)10-11(7,8)9/h2,4H,1H2,(H,5,6)(H2,7,8,9)/t2-/m1/s1</in:inchi>
<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
<rdf:Description rdf:about="#meta_M_36">
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<rdf:Bag>
<rdf:li rdf:resource="#meta_M_36"/>
<rdf:li rdf:resource="urn:miriam:obo.chebi:CHEBI:17835"/>
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</rdf:Description>
</rdf:RDF>
</annotation>
</species>
<species metaid="meta_M_289" id="M_289" name="Glyceraldehyde 3-phosphate" compartment="C_1" initialConcentration="0" sboTerm="SBO:0000299">
<annotation>
<in:inchi xmlns:in="http://biomodels.net/inchi" metaid="meta_M_289_inchi">InChI=1/C3H7O6P/c4-1-3(5)2-9-10(6,7)8/h1,3,5H,2H2,(H2,6,7,8)</in:inchi>
<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
<rdf:Description rdf:about="#meta_M_289">
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<rdf:Bag>
<rdf:li rdf:resource="#meta_M_289"/>
<rdf:li rdf:resource="urn:miriam:obo.chebi:CHEBI:29052"/>
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</rdf:Description>
</rdf:RDF>
</annotation>
</species>
<species metaid="meta_M_411" id="M_411" name="Nicotinamide adenine dinucleotide" compartment="C_1" initialConcentration="4" sboTerm="SBO:0000299">
<annotation>
<in:inchi xmlns:in="http://biomodels.net/inchi" metaid="meta_M_411_inchi">InChI=1/C21H27N7O14P2/c22-17-12-19(25-7-24-17)28(8-26-12)21-16(32)14(30)11(41-21)6-39-44(36,37)42-43(34,35)38-5-10-13(29)15(31)20(40-10)27-3-1-2-9(4-27)18(23)33/h1-4,7-8,10-11,13-16,20-21,29-32H,5-6H2,(H5-,22,23,24,25,33,34,35,36,37)/p+1/t10-,11-,13-,14-,15-,16-,20-,21-/m1/s1/fC21H28N7O14P2/h34,36H,22-23H2/q+1</in:inchi>
<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
<rdf:Description rdf:about="#meta_M_411">
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<rdf:Bag>
<rdf:li rdf:resource="#meta_M_411"/>
<rdf:li rdf:resource="urn:miriam:obo.chebi:CHEBI:15846"/>
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</annotation>
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<species metaid="meta_M_454" id="M_454" name="Phosphate" compartment="C_1" initialConcentration="4" sboTerm="SBO:0000299">
<annotation>
<in:inchi xmlns:in="http://biomodels.net/inchi" metaid="meta_M_454_inchi">InChI=1/H3O4P/c1-5(2,3)4/h(H3,1,2,3,4)/p-3/fO4P/q-3</in:inchi>
<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
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<rdf:li rdf:resource="urn:miriam:obo.chebi:CHEBI:18367"/>
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</species>
<species metaid="meta_M_304" id="M_304" name="D-Glucose" compartment="C_1" initialConcentration="50" sboTerm="SBO:0000299">
<annotation>
<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
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</annotation>
</species>
<species metaid="meta_M_57" id="M_57" name="3-Phospho-D-glycerate" compartment="C_1" initialConcentration="0" sboTerm="SBO:0000299">
<annotation>
<in:inchi xmlns:in="http://biomodels.net/inchi" metaid="meta_M_57_inchi">InChI=1/C3H7O7P/c4-2(3(5)6)1-10-11(7,8)9/h2,4H,1H2,(H,5,6)(H2,7,8,9)/t2-/m1/s1</in:inchi>
<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
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<species metaid="meta_M_329" id="M_329" name="H+" compartment="C_1" initialConcentration="4" sboTerm="SBO:0000299">
<annotation>
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<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
<rdf:Description rdf:about="#meta_M_329">
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<rdf:Bag>
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<rdf:li rdf:resource="urn:miriam:obo.chebi:CHEBI:15378"/>
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<species metaid="meta_M_446" id="M_446" name="Phosphoenolpyruvate" compartment="C_1" initialConcentration="0" sboTerm="SBO:0000299">
<annotation>
<in:inchi xmlns:in="http://biomodels.net/inchi" metaid="meta_M_446_inchi">InChI=1/C3H5O6P/c1-2(3(4)5)9-10(6,7)8/h1H2,(H,4,5)(H2,6,7,8)/p-1</in:inchi>
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<rdf:Description rdf:about="#meta_M_446">
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<species metaid="meta_M_483" id="M_483" name="Pyruvate" compartment="C_1" initialConcentration="0" sboTerm="SBO:0000299">
<annotation>
<in:inchi xmlns:in="http://biomodels.net/inchi" metaid="meta_M_483_inchi">InChI=1/C3H4O3/c1-2(4)3(5)6/h1H3,(H,5,6)/p-1/fC3H3O3/q-1</in:inchi>
<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
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<rdf:Bag>
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<species metaid="meta_M_234" id="M_234" name="Dihydroxyacetone phosphate" compartment="C_1" initialConcentration="0" sboTerm="SBO:0000299">
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</bqbiol:isDescribedBy>
</rdf:Description>
</rdf:RDF>
</annotation>
<listOfReactants>
<speciesReference species="M_36"/>
</listOfReactants>
<listOfProducts>
<speciesReference species="M_330"/>
<speciesReference species="M_446"/>
</listOfProducts>
<listOfModifiers>
<modifierSpeciesReference species="E_352"/>
</listOfModifiers>
<kineticLaw>
<math xmlns="http://www.w3.org/1998/Math/MathML">
<apply>
<divide/>
<apply>
<times/>
<ci> Vmax </ci>
<ci> M_36 </ci>
</apply>
<apply>
<plus/>
<ci> Km </ci>
<ci> M_36 </ci>
</apply>
</apply>
</math>
<listOfParameters>
<parameter id="Km" value="48"/>
<parameter id="Vmax" value="42"/>
<parameter id="B" value="1"/>
</listOfParameters>
</kineticLaw>
</reaction>
<reaction metaid="meta_R_1501" id="R_1501" name="glyceraldehyde-3-phosphate dehydrogenase" sboTerm="SBO:0000176">
<annotation>
<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
<rdf:Description rdf:about="#meta_R_1501">
<bqbiol:isDescribedBy>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:pubmed:3905788"/>
<rdf:li rdf:resource="urn:miriam:ec-code:1.2.1.12"/>
</rdf:Bag>
</bqbiol:isDescribedBy>
</rdf:Description>
</rdf:RDF>
</annotation>
<listOfReactants>
<speciesReference species="M_289"/>
<speciesReference species="M_411"/>
<speciesReference species="M_454"/>
</listOfReactants>
<listOfProducts>
<speciesReference species="M_4"/>
<speciesReference species="M_329"/>
<speciesReference species="M_412"/>
</listOfProducts>
<listOfModifiers>
<modifierSpeciesReference species="E_426"/>
</listOfModifiers>
<kineticLaw>
<math xmlns="http://www.w3.org/1998/Math/MathML">
<apply>
<times/>
<ci> k1 </ci>
<ci> M_289 </ci>
<ci> M_411 </ci>
<ci> M_454 </ci>
</apply>
</math>
<listOfParameters>
<parameter id="k1" value="1"/>
</listOfParameters>
</kineticLaw>
</reaction>
<reaction metaid="meta_R_1549" id="R_1549" name="hexokinase (D-glucose:ATP)" sboTerm="SBO:0000176">
<annotation>
<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
<rdf:Description rdf:about="#meta_R_1549">
<bqbiol:isDescribedBy>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:pubmed:6394965"/>
<rdf:li rdf:resource="urn:miriam:ec-code:2.7.1.1"/>
</rdf:Bag>
</bqbiol:isDescribedBy>
</rdf:Description>
</rdf:RDF>
</annotation>
<listOfReactants>
<speciesReference species="M_172"/>
<speciesReference species="M_304"/>
</listOfReactants>
<listOfProducts>
<speciesReference species="M_135"/>
<speciesReference species="M_292"/>
<speciesReference species="M_329"/>
</listOfProducts>
<listOfModifiers>
<modifierSpeciesReference species="E_502"/>
</listOfModifiers>
<kineticLaw>
<math xmlns="http://www.w3.org/1998/Math/MathML">
<apply>
<times/>
<ci> k2 </ci>
<ci> M_172 </ci>
<ci> M_304 </ci>
</apply>
</math>
<listOfParameters>
<parameter id="k2" value="1"/>
</listOfParameters>
</kineticLaw>
</reaction>
<reaction metaid="meta_R_1655" id="R_1655" name="phosphoglycerate mutase" sboTerm="SBO:0000176">
<annotation>
<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
<rdf:Description rdf:about="#meta_R_1655">
<bqbiol:isDescribedBy>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:pubmed:3033435"/>
<rdf:li rdf:resource="urn:miriam:ec-code:5.4.2.1"/>
</rdf:Bag>
</bqbiol:isDescribedBy>
</rdf:Description>
</rdf:RDF>
</annotation>
<listOfReactants>
<speciesReference species="M_57"/>
</listOfReactants>
<listOfProducts>
<speciesReference species="M_36"/>
</listOfProducts>
<listOfModifiers>
<modifierSpeciesReference species="E_336"/>
</listOfModifiers>
<kineticLaw>
<math xmlns="http://www.w3.org/1998/Math/MathML">
<apply>
<times/>
<ci> k3 </ci>
<ci> M_57 </ci>
</apply>
</math>
<listOfParameters>
<parameter id="k3" value="1"/>
</listOfParameters>
</kineticLaw>
</reaction>
<reaction metaid="meta_R_1680" id="R_1680" name="pyruvate kinase" sboTerm="SBO:0000176">
<annotation>
<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
<rdf:Description rdf:about="#meta_R_1680">
<bqbiol:isDescribedBy>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:pubmed:6185493"/>
<rdf:li rdf:resource="urn:miriam:ec-code:2.7.1.40"/>
</rdf:Bag>
</bqbiol:isDescribedBy>
</rdf:Description>
</rdf:RDF>
</annotation>
<listOfReactants>
<speciesReference species="M_135"/>
<speciesReference species="M_329"/>
<speciesReference species="M_446"/>
</listOfReactants>
<listOfProducts>
<speciesReference species="M_172"/>
<speciesReference species="M_483"/>
</listOfProducts>
<listOfModifiers>
<modifierSpeciesReference species="E_726"/>
</listOfModifiers>
<kineticLaw>
<math xmlns="http://www.w3.org/1998/Math/MathML">
<apply>
<times/>
<ci> k4 </ci>
<ci> M_135 </ci>
<ci> M_329 </ci>
<ci> M_446 </ci>
</apply>
</math>
<listOfParameters>
<parameter id="k4" value="1"/>
</listOfParameters>
</kineticLaw>
</reaction>
<reaction metaid="meta_R_1681" id="R_1681" name="pyruvate decarboxylase" sboTerm="SBO:0000176">
<annotation>
<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
<rdf:Description rdf:about="#meta_R_1681">
<bqbiol:isDescribedBy>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:ec-code:4.1.1.1"/>
</rdf:Bag>
</bqbiol:isDescribedBy>
</rdf:Description>
</rdf:RDF>
</annotation>
<listOfReactants>
<speciesReference species="M_329"/>
<speciesReference species="M_483"/>
</listOfReactants>
<listOfProducts>
<speciesReference species="M_121"/>
<speciesReference species="M_203"/>
</listOfProducts>
<listOfModifiers>
<modifierSpeciesReference species="E_24"/>
</listOfModifiers>
<kineticLaw>
<math xmlns="http://www.w3.org/1998/Math/MathML">
<apply>
<times/>
<ci> k5 </ci>
<ci> M_329 </ci>
<ci> M_483 </ci>
</apply>
</math>
<listOfParameters>
<parameter id="k5" value="1"/>
</listOfParameters>
</kineticLaw>
</reaction>
</listOfReactions>
</model>
</sbml>
2010-03-25 17:13:58.932 GMT
parameterised_sbml
A SBML model with parameterised reaction kinetics, and protein and metabolite starting concentrations
2010-03-26 08:59:33.123 GMT
createSysbioDataSourcesbml0net.sf.taverna.t2.activitiesbeanshell-activity1.0net.sf.taverna.t2.activities.beanshell.BeanshellActivity
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0
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regex
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split
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net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokeregex2value00net.sf.taverna.t2.activitiesstringconstant-activity1.0net.sf.taverna.t2.activities.stringconstant.StringConstantActivity
;
net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokecreateSysbioDataSourcesbmlgetCompoundNamecompoundIdupdateDataSourcechebiIdsupdateDataSourcesabioCompoundNamesupdateDataSourcesabioCompoundIdsgetReactantIdsreactionIdsgetReactantSabioCompNamereactantIdsgetProductIdsreactionIdsgetProductSabioCompNameproductIdsgetReactionIdFromCompound1compNamegetReactionIdFromCompound2compNamemergeReactionIds1reactionIdsmergeReactionIds2reactionIdsintersect1inputCSVintersect2inputCSVfinalIntersectintersectResults1finalIntersectintersectResults2cleanreactionIdsInsplitregexsplitstringgetReactionInstanceIdsreactionIdgetModifierIdsreactionIdgetUniprotIdsmodifierIdgetReactionInstanceIdsFromProteinuniprotflattenInstIdsinputIdsfiltermetaboliteInstIdsfilterenzymeInstIdsgetKineticLawinstIdinsertKineticLawformulainsertKineticLawinstIdinsertKineticLawreactionIdgetExptConditionsinstIdreactionInstIdSelectorexpConditionsListreactionInstIdSelectorreactionIdsgetParametersinstIdinsertParametersparamsListinsertUnitsunitsaddMetaboliteConcsToDataSourceSourceMetaboliteConcentrationsgetCompoundIdsFromChebiIdchebiIdflatteninputCompoundIdssplit2regexsplit2stringparameterised_sbml
Peter Li
2010-03-26 17:17:58.369 GMT
This workflow parameterises an SBML model generated by the qualitative SBML model construction workflow
2010-03-26 17:19:14.876 GMT
SBML model parameterisation
2010-03-26 17:18:26.750 GMT
Workflow38uniprot00instanceIdsgetReactionInstanceIDsFromProteinparameters0parameters00net.sf.taverna.t2.activitieswsdl-activity1.0.1net.sf.taverna.t2.activities.wsdl.WSDLActivity
http://sabio.villa-bosch.de/sabiork?wsdl
getReactionInstanceIDsFromProtein
net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokegetReactionInstanceIDsFromProtein_inputarg00output00net.sf.taverna.t2.activitieswsdl-activity1.0.1net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLInputSplitterActivity
<s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="getReactionInstanceIDsFromProtein" name="parameters" qname="{http://localhost:8084/SpringingSabioRk/sabiork}getReactionInstanceIDsFromProtein"><s:elements><s:basetype optional="true" unbounded="false" typename="string" name="arg0" qname="getReactionInstanceIDsFromProtein>arg0" /></s:elements></s:complextype></s:extensions>
false
arg0
0
'text/plain'
0
output
0
'text/xml'
net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokegetReactionInstanceIDsFromProtein_outputinput0return11net.sf.taverna.t2.activitieswsdl-activity1.0.1net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLOutputSplitterActivity
<s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="getReactionInstanceIDsFromProteinResponse" name="parameters" qname="{http://localhost:8084/SpringingSabioRk/sabiork}getReactionInstanceIDsFromProteinResponse"><s:elements><s:arraytype optional="true" unbounded="true" wrapped="false" typename="int" name="return" qname="getReactionInstanceIDsFromProteinResponse>return"><s:elementtype><s:basetype optional="false" unbounded="false" typename="int" name="" qname="{http://www.w3.org/2001/XMLSchema}int" /></s:elementtype></s:arraytype></s:elements></s:complextype></s:extensions>
java.lang.String
false
input
0
'text/xml'
1
return
1
l('text/plain')
net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokegetReactionInstanceIDsFromProteinparametersgetReactionInstanceIDsFromProtein_inputarg0getReactionInstanceIDsFromProtein_outputinputinstanceIdsWorkflow33chebiId00compoundIdsgetCompoundIDsFromCHEBIIDparameters0parameters00net.sf.taverna.t2.activitieswsdl-activity1.0.1net.sf.taverna.t2.activities.wsdl.WSDLActivity
http://sabio.villa-bosch.de:80/sabiork?wsdl
getCompoundIDsFromCHEBIID
net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokegetCompoundIDsFromCHEBIID_inputarg00output00net.sf.taverna.t2.activitieswsdl-activity1.0.1net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLInputSplitterActivity
<s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="getCompoundIDsFromCHEBIID" name="parameters" qname="{http://localhost:8084/SpringingSabioRk/sabiork}getCompoundIDsFromCHEBIID"><s:elements><s:basetype optional="true" unbounded="false" typename="string" name="arg0" qname="getCompoundIDsFromCHEBIID>arg0" /></s:elements></s:complextype></s:extensions>
false
arg0
0
'text/plain'
0
output
0
'text/xml'
net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokegetCompoundIDsFromCHEBIID_outputinput0return11net.sf.taverna.t2.activitieswsdl-activity1.0.1net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLOutputSplitterActivity
<s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="getCompoundIDsFromCHEBIIDResponse" name="parameters" qname="{http://localhost:8084/SpringingSabioRk/sabiork}getCompoundIDsFromCHEBIIDResponse"><s:elements><s:arraytype optional="true" unbounded="true" wrapped="false" typename="int" name="return" qname="getCompoundIDsFromCHEBIIDResponse>return"><s:elementtype><s:basetype optional="false" unbounded="false" typename="int" name="" qname="{http://www.w3.org/2001/XMLSchema}int" /></s:elementtype></s:arraytype></s:elements></s:complextype></s:extensions>
java.lang.String
false
input
0
'text/xml'
1
return
1
l('text/plain')
net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokegetCompoundIDsFromCHEBIIDparametersgetCompoundIDsFromCHEBIID_inputarg0getCompoundIDsFromCHEBIID_outputinputcompoundIdsWorkflow11compName00reactionIdgetReactionIDFromCompoundparameters0parameters00net.sf.taverna.t2.activitieswsdl-activity1.0.1net.sf.taverna.t2.activities.wsdl.WSDLActivity
http://sabio.villa-bosch.de/sabiork?wsdl
getReactionIDFromCompound
net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokegetReactionIDFromCompound_inputarg00output00net.sf.taverna.t2.activitieswsdl-activity1.0.1net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLInputSplitterActivity
<s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="getReactionIDFromCompound" name="parameters" qname="{http://localhost:8084/SpringingSabioRk/sabiork}getReactionIDFromCompound"><s:elements><s:basetype optional="true" unbounded="false" typename="string" name="arg0" qname="getReactionIDFromCompound>arg0" /></s:elements></s:complextype></s:extensions>
false
arg0
0
'text/plain'
0
output
0
'text/xml'
net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokegetReactionIDFromCompound_outputinput0return11net.sf.taverna.t2.activitieswsdl-activity1.0.1net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLOutputSplitterActivity
<s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="getReactionIDFromCompoundResponse" name="parameters" qname="{http://localhost:8084/SpringingSabioRk/sabiork}getReactionIDFromCompoundResponse"><s:elements><s:arraytype optional="true" unbounded="true" wrapped="false" typename="int" name="return" qname="getReactionIDFromCompoundResponse>return"><s:elementtype><s:basetype optional="false" unbounded="false" typename="int" name="" qname="{http://www.w3.org/2001/XMLSchema}int" /></s:elementtype></s:arraytype></s:elements></s:complextype></s:extensions>
java.lang.String
false
input
0
'text/xml'
1
return
1
l('text/plain')
net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokegetReactionIDFromCompoundparametersgetReactionIDFromCompound_inputarg0getReactionIDFromCompound_outputinputreactionIdWorkflow1SourceMetaboliteConcentrations00outupdateDatasourcedata1status00net.sf.taverna.t2.activitiesbeanshell-activity1.0net.sf.taverna.t2.activities.beanshell.BeanshellActivity
system
sqlitejdbc-v053.jar
java.lang.String
true
data
1
text/plain
0
status
0
net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeupdateDatasourcedataoutWorkflow1outexptTitlevalue00net.sf.taverna.t2.activitiesstringconstant-activity1.0net.sf.taverna.t2.activities.stringconstant.StringConstantActivity
MCISB Proteomics Results
net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeexptDatevalue00net.sf.taverna.t2.activitiesstringconstant-activity1.0net.sf.taverna.t2.activities.stringconstant.StringConstantActivity
2009-09-16
net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokecreateCountUrldate0title0url00net.sf.taverna.t2.activitiesbeanshell-activity1.0net.sf.taverna.t2.activities.beanshell.BeanshellActivity
workflow
java.lang.String
true
date
0
text/plain
java.lang.String
true
title
0
text/plain
0
url
0
net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokegetCounturl0contents00net.sf.taverna.t2.activitieslocalworker-activity1.0net.sf.taverna.t2.activities.localworker.LocalworkerActivity
org.embl.ebi.escience.scuflworkers.java.WebPageFetcher
workflow
java.lang.String
true
url
0
'text/x-taverna-web-url'
java.lang.String
true
base
0
'text/x-taverna-web-url'
0
contents
0
'text/plain,text/html'
net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokecleanCountDatainStr0outStr00net.sf.taverna.t2.activitiesbeanshell-activity1.0net.sf.taverna.t2.activities.beanshell.BeanshellActivity
workflow
java.lang.String
true
inStr
0
text/plain
0
outStr
0
net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokecreateQueryUrldate0title0count0url00net.sf.taverna.t2.activitiesbeanshell-activity1.0net.sf.taverna.t2.activities.beanshell.BeanshellActivity
workflow
java.lang.String
true
count
0
text/plain
java.lang.String
true
date
0
text/plain
java.lang.String
true
title
0
text/plain
0
url
0
net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokegetDataurl0contents00net.sf.taverna.t2.activitieslocalworker-activity1.0net.sf.taverna.t2.activities.localworker.LocalworkerActivity
org.embl.ebi.escience.scuflworkers.java.WebPageFetcher
workflow
java.lang.String
true
url
0
'text/x-taverna-web-url'
java.lang.String
true
base
0
'text/x-taverna-web-url'
0
contents
0
'text/plain,text/html'
net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokecleanDatainStr0outStr00net.sf.taverna.t2.activitiesbeanshell-activity1.0net.sf.taverna.t2.activities.beanshell.BeanshellActivity
workflow
java.lang.String
true
inStr
0
text/plain
0
outStr
0
net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokegetEnzymeNamesnames11net.sf.taverna.t2.activitiesbeanshell-activity1.0net.sf.taverna.t2.activities.beanshell.BeanshellActivity
system
sqlitejdbc-v053.jar
1
names
1
net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokenormalisenames1concentrations0out11net.sf.taverna.t2.activitiesbeanshell-activity1.0net.sf.taverna.t2.activities.beanshell.BeanshellActivity
workflow
java.lang.String
true
names
1
text/plain
java.lang.String
true
concentrations
0
text/plain
1
out
1
net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeupdateDatasourcedata1status00net.sf.taverna.t2.activitiesbeanshell-activity1.0net.sf.taverna.t2.activities.beanshell.BeanshellActivity
system
sqlitejdbc-v053.jar
java.lang.String
true
data
1
text/plain
0
status
0
net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokecreateCountUrldatecreateCountUrltitlegetCounturlcleanCountDatainStrcreateQueryUrldatecreateQueryUrltitlecreateQueryUrlcountgetDataurlcleanDatainStrnormalisenamesnormaliseconcentrationsupdateDatasourcedataoutWorkflow12compoundId00compoundNamegetCompoundNameparameters0parameters00net.sf.taverna.t2.activitieswsdl-activity1.0.1net.sf.taverna.t2.activities.wsdl.WSDLActivity
http://sabio.villa-bosch.de/sabiork?wsdl
getCompoundName
net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokegetCompoundName_inputarg00output00net.sf.taverna.t2.activitieswsdl-activity1.0.1net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLInputSplitterActivity
<s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="getCompoundName" name="parameters" qname="{http://localhost:8084/SpringingSabioRk/sabiork}getCompoundName"><s:elements><s:basetype optional="false" unbounded="false" typename="int" name="arg0" qname="getCompoundName>arg0" /></s:elements></s:complextype></s:extensions>
false
arg0
0
'text/plain'
0
output
0
'text/xml'
net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokegetCompoundName_outputinput0return00net.sf.taverna.t2.activitieswsdl-activity1.0.1net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLOutputSplitterActivity
<s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="getCompoundNameResponse" name="parameters" qname="{http://localhost:8084/SpringingSabioRk/sabiork}getCompoundNameResponse"><s:elements><s:basetype optional="true" unbounded="false" typename="string" name="return" qname="getCompoundNameResponse>return" /></s:elements></s:complextype></s:extensions>
java.lang.String
false
input
0
'text/xml'
0
return
0
'text/plain'
net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokegetCompoundNameparametersgetCompoundName_inputarg0getCompoundName_outputinputcompoundNameWorkflow31instId00exptalConditiongetExpConditionsparameters0parameters00net.sf.taverna.t2.activitieswsdl-activity1.0.1net.sf.taverna.t2.activities.wsdl.WSDLActivity
http://sabio.villa-bosch.de/sabiork?wsdl
getExpConditions
net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokegetExpConditions_inputarg00output00net.sf.taverna.t2.activitieswsdl-activity1.0.1net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLInputSplitterActivity
<s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="getExpConditions" name="parameters" qname="{http://localhost:8084/SpringingSabioRk/sabiork}getExpConditions"><s:elements><s:basetype optional="false" unbounded="false" typename="int" name="arg0" qname="getExpConditions>arg0" /></s:elements></s:complextype></s:extensions>
false
arg0
0
'text/plain'
0
output
0
'text/xml'
net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokegetExpConditions_outputinput0return00net.sf.taverna.t2.activitieswsdl-activity1.0.1net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLOutputSplitterActivity
<s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="getExpConditionsResponse" name="parameters" qname="{http://localhost:8084/SpringingSabioRk/sabiork}getExpConditionsResponse"><s:elements><s:basetype optional="true" unbounded="false" typename="string" name="return" qname="getExpConditionsResponse>return" /></s:elements></s:complextype></s:extensions>
java.lang.String
false
input
0
'text/xml'
0
return
0
'text/plain'
net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokegetExpConditionsparametersgetExpConditions_inputarg0getExpConditions_outputinputexptalConditionWorkflow9instId00kineticLawgetKineticLawparameters0parameters00net.sf.taverna.t2.activitieswsdl-activity1.0.1net.sf.taverna.t2.activities.wsdl.WSDLActivity
http://sabio.villa-bosch.de/sabiork?wsdl
getKineticLaw
net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokegetKineticLaw_inputarg00output00net.sf.taverna.t2.activitieswsdl-activity1.0.1net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLInputSplitterActivity
<s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="getKineticLaw" name="parameters" qname="{http://localhost:8084/SpringingSabioRk/sabiork}getKineticLaw"><s:elements><s:basetype optional="false" unbounded="false" typename="int" name="arg0" qname="getKineticLaw>arg0" /></s:elements></s:complextype></s:extensions>
false
arg0
0
'text/plain'
0
output
0
'text/xml'
net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokegetKineticLaw_outputinput0return00net.sf.taverna.t2.activitieswsdl-activity1.0.1net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLOutputSplitterActivity
<s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="getKineticLawResponse" name="parameters" qname="{http://localhost:8084/SpringingSabioRk/sabiork}getKineticLawResponse"><s:elements><s:basetype optional="true" unbounded="false" typename="string" name="return" qname="getKineticLawResponse>return" /></s:elements></s:complextype></s:extensions>
java.lang.String
false
input
0
'text/xml'
0
return
0
'text/plain'
net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokegetKineticLawparametersgetKineticLaw_inputarg0getKineticLaw_outputinputkineticLawWorkflow20instId00parametersgetParametersXMLparameters0parameters00net.sf.taverna.t2.activitieswsdl-activity1.0.1net.sf.taverna.t2.activities.wsdl.WSDLActivity
http://sabio.villa-bosch.de/sabiork?wsdl
getParametersXML
net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokegetParametersXML_inputarg00output00net.sf.taverna.t2.activitieswsdl-activity1.0.1net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLInputSplitterActivity
<s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="getParametersXML" name="parameters" qname="{http://localhost:8084/SpringingSabioRk/sabiork}getParametersXML"><s:elements><s:basetype optional="false" unbounded="false" typename="int" name="arg0" qname="getParametersXML>arg0" /></s:elements></s:complextype></s:extensions>
false
arg0
0
'text/plain'
0
output
0
'text/xml'
net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokegetParametersXML_outputinput0return00net.sf.taverna.t2.activitieswsdl-activity1.0.1net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLOutputSplitterActivity
<s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="getParametersXMLResponse" name="parameters" qname="{http://localhost:8084/SpringingSabioRk/sabiork}getParametersXMLResponse"><s:elements><s:basetype optional="true" unbounded="false" typename="string" name="return" qname="getParametersXMLResponse>return" /></s:elements></s:complextype></s:extensions>
java.lang.String
false
input
0
'text/xml'
0
return
0
'text/plain'
net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokegetParametersXMLparametersgetParametersXML_inputarg0getParametersXML_outputinputparametersWorkflow37reactionId00instanceIdsgetReactionInstanceIDsparameters0parameters00net.sf.taverna.t2.activitieswsdl-activity1.0.1net.sf.taverna.t2.activities.wsdl.WSDLActivity
http://sabio.villa-bosch.de/sabiork?wsdl
getReactionInstanceIDs
net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokegetReactionInstanceIDs_inputarg00output00net.sf.taverna.t2.activitieswsdl-activity1.0.1net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLInputSplitterActivity
<s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="getReactionInstanceIDs" name="parameters" qname="{http://localhost:8084/SpringingSabioRk/sabiork}getReactionInstanceIDs"><s:elements><s:basetype optional="false" unbounded="false" typename="int" name="arg0" qname="getReactionInstanceIDs>arg0" /></s:elements></s:complextype></s:extensions>
false
arg0
0
'text/plain'
0
output
0
'text/xml'
net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokegetReactionInstanceIDs_outputinput0return11net.sf.taverna.t2.activitieswsdl-activity1.0.1net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLOutputSplitterActivity
<s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="getReactionInstanceIDsResponse" name="parameters" qname="{http://localhost:8084/SpringingSabioRk/sabiork}getReactionInstanceIDsResponse"><s:elements><s:arraytype optional="true" unbounded="true" wrapped="false" typename="int" name="return" qname="getReactionInstanceIDsResponse>return"><s:elementtype><s:basetype optional="false" unbounded="false" typename="int" name="" qname="{http://www.w3.org/2001/XMLSchema}int" /></s:elementtype></s:arraytype></s:elements></s:complextype></s:extensions>
java.lang.String
false
input
0
'text/xml'
1
return
1
l('text/plain')
net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokegetReactionInstanceIDsparametersgetReactionInstanceIDs_inputarg0getReactionInstanceIDs_outputinputinstanceIds