Retrieve_documents_MR1

Created: 2007-12-10 22:17:00

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This workflow applies the search web service from the AIDA toolbox.

Comments:

This search service is based on lucene defaults; it may be necessary to optimize the querystring to adopt the behaviour to what is most relevant in a particular domain (e.g. for medline prioritizing based on publication date is useful). Lucene favours shorter sentences, which may be bad for subsequent information extraction.

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Workflow Components

Inputs (4)

Name	Description
queryString
document_index
search_field
maxHits

Processors (1)

Name	Type	Description
search	arbitrarywsdl

Beanshells (0)

Outputs (1)

Name	Description
relevant_documents

Links (5)

Source	Sink
document_index	search:index
maxHits	search:maxHits
queryString	search:queryString
search_field	search:defaultField
search:searchReturn	relevant_documents

Coordinations (0)

Information Workflow Type

Taverna 1

Information Uploader

Marco Roos

Information License

All versions of this Workflow are licensed under:

Information Version 1 (of 1)

Information Credits (3)

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Information Tags (4)

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Information Statistics

2507 viewings

2561 downloads

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Version History

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Retrieve_documents_MR1

Created by Marco Roos on Monday 10 December 2007 22:17:00 (UTC)

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This workflow was based on BioAID_DiseaseDiscovery, changes: expects only one protein name, adds protein synonyms). This workflow finds diseases relevant to the query string via the following steps: A user query: a single protein name Add synonyms (service courtesy of Martijn Scheumie, Erasmus University Rotterdam) Retrieve documents: finds relevant documents (abstract+title) based on query Discover proteins: extract proteins discovered in the set of relevant abstracts 5. Link proteins ...

Created: 2007-11-14 | Last updated: 2007-11-15

Credits: Marco Roos Martijn Schuemie AID

Attributions: BioAID_DiseaseDiscovery_RatHumanMouseUniprotFilter

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Uploader

Marco Roos

Retrieve_bio_documents (2)

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This workflow retrieves relevant documents, based on a query optimized by adding a string to the original query that will rank the search output according to the most recent years. The added string adds years with priorities (most recent is highest); it starts at 2007.

Created: 2007-12-10 | Last updated: 2007-12-10

Credits: Marco Roos Edgar AID