LipidMaps Query

None

output = string1 + string2;
output = string1 + string2;
URL inputURL = null;if (base != void) {  inputURL = new URL(new URL(base), url);}else {  inputURL = new URL(url);}URLConnection con = inputURL.openConnection();InputStream in = con.getInputStream();InputStreamReader isr = new InputStreamReader(in);Reader inReader = new BufferedReader(isr);StringBuffer buf = new StringBuffer();int ch;while ((ch = inReader.read()) > -1) {  buf.append((char)ch);}inReader.close();contents = buf.toString();//String NEWLINE = System.getProperty("line.separator");////URL inputURL = null;//if (base != void) {//	inputURL = new URL(new URL(base), url);//} else {//	inputURL = new URL(url);//}//StringBuffer result = new StringBuffer();//BufferedReader reader = new BufferedReader(new InputStreamReader(inputURL.openStream()));//String line = null;//while ((line = reader.readLine()) != null) {//	result.append(line);//	result.append(NEWLINE);//}////contents = result.toString();
List split = new ArrayList();if (!string.equals("")) {	String regexString = ",";	if (regex != void) {		regexString = regex;	}	String[] result = string.split(regexString);	for (int i = 0; i < result.length; i++) {		split.add(result[i]);	}}
List split = new ArrayList();if (!string.equals("")) {	String regexString = ",";	if (regex != void) {		regexString = regex;	}	String[] result = string.split(regexString);	for (int i = 0; i < result.length; i++) {		split.add(result[i]);	}}
LMID = query.get(0);COMMONNAME = query.get(1);SYSTEMATICNAME = query.get(2);FORMULA = query.get(3);MASS  = query.get(4);CATEGORY = query.get(5);MAIN_CLASS = query.get(6);
List split = new ArrayList();if (!string.equals("")) {	String regexString = ",";	if (regex != void) {		regexString = regex;	}	String[] result = string.split(regexString);	for (int i = 0; i < result.length; i++) {		split.add(result[i]);	}}
output = string1 + string2;

Name	Description
ExactMass	Exact Mass Enter Exact Massthere are 2 possibilities:a) enter masses manually orb) call text file containing masses in single column (using "add file location") Enter Exact Massthere are 2 possibilities:a) enter masses muanually orb) Enter Exact Massthere are 2 possibilities:a) enter masses muanually orb) call text file (using "add file location")
Tolerance	Enter Tolerance Value Tolerance

Name	Type	Description
LM_URL1	stringconstant	Value http://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessTextSearch&OutputMode=File&ExactMassOffSet=
LM_URL2	stringconstant	Value &OutputColumnHeader=no&OutputQuote=no&OutputDelimiter=Tab&ExactMass=
merge1	localworker	Script output = string1 + string2;
merge2	localworker	Script output = string1 + string2;
download_content	localworker	Script URL inputURL = null;if (base != void) { inputURL = new URL(new URL(base), url);}else { inputURL = new URL(url);}URLConnection con = inputURL.openConnection();InputStream in = con.getInputStream();InputStreamReader isr = new InputStreamReader(in);Reader inReader = new BufferedReader(isr);StringBuffer buf = new StringBuffer();int ch;while ((ch = inReader.read()) > -1) { buf.append((char)ch);}inReader.close();contents = buf.toString();//String NEWLINE = System.getProperty("line.separator");////URL inputURL = null;//if (base != void) {// inputURL = new URL(new URL(base), url);//} else {// inputURL = new URL(url);//}//StringBuffer result = new StringBuffer();//BufferedReader reader = new BufferedReader(new InputStreamReader(inputURL.openStream()));//String line = null;//while ((line = reader.readLine()) != null) {// result.append(line);// result.append(NEWLINE);//}////contents = result.toString();
split_lines	localworker	Script List split = new ArrayList();if (!string.equals("")) { String regexString = ","; if (regex != void) { regexString = regex; } String[] result = string.split(regexString); for (int i = 0; i < result.length; i++) { split.add(result[i]); }}
Newline	stringconstant	Value \n
split_whitespaces	localworker	Script List split = new ArrayList();if (!string.equals("")) { String regexString = ","; if (regex != void) { regexString = regex; } String[] result = string.split(regexString); for (int i = 0; i < result.length; i++) { split.add(result[i]); }}
Tab	stringconstant	Value \t
split_entries	beanshell	Script LMID = query.get(0);COMMONNAME = query.get(1);SYSTEMATICNAME = query.get(2);FORMULA = query.get(3);MASS = query.get(4);CATEGORY = query.get(5);MAIN_CLASS = query.get(6);
reformat_list	localworker	Script List split = new ArrayList();if (!string.equals("")) { String regexString = ","; if (regex != void) { regexString = regex; } String[] result = string.split(regexString); for (int i = 0; i < result.length; i++) { split.add(result[i]); }}
merge3	localworker	Script output = string1 + string2;

Name	Description
01_IDs	LipidMaps ID
02_CommonNames	Common Name
04_Formulae	Molecular Formula
05_Mass	Molecular Mass
06_Category	Lipid Lipid Category
03_Systematic_Name	Systematic Name

Source	Sink
LM_URL1:value	merge1:string1
Tolerance	merge1:string2
LM_URL2:value	merge2:string2
merge1:output	merge2:string1
merge3:output	download_content:url
download_content:contents	split_lines:string
Newline:value	split_lines:regex
split_lines:split	split_whitespaces:string
Tab:value	split_whitespaces:regex
split_whitespaces:split	split_entries:query
Newline:value	reformat_list:regex
ExactMass	reformat_list:string
merge2:output	merge3:string1
reformat_list:split	merge3:string2
split_entries:LMID	01_IDs
split_entries:COMMONNAME	02_CommonNames
split_entries:FORMULA	04_Formulae
split_entries:MASS	05_Mass
split_entries:CATEGORY	06_Category
split_entries:SYSTEMATICNAME	03_Systematic_Name

LipidMaps Query

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