Get TP53 Mutations By Exon
Created: 2010-01-15 16:21:45
This workflow takes the exon and the TP53 somatic mutation database as input and retrieve the full TP53 somatic mutation description(s) by first retrieving the TP53 somatic mutation database unique IDs associated with the input (done via a call to the getP53MutationIdsByExon web service) and then using IDs for retrieving the full TP53 somatic mutations descriptions (done via a call to the getP53MutationsByIds web service).
Special requirements on input data are:
- The exon range of numbers is 2-11,
- when specifying more than one exon, they must be in a unique input string but on distinct text lines
Preview
Run
Run this Workflow in the Taverna Workbench...
Workflow Components
Inputs (2)
Name |
Description |
lib |
|
exon |
|
Processors (7)
Name |
Type |
Description |
Filter_list_of_strings_extracting_match_to_a_regex |
local |
|
Split_string_into_string_list_by_regular_expression |
local |
|
regex_entry_list_separator |
stringconstant |
|
id_position |
stringconstant |
|
regex_id_separator |
stringconstant |
|
getP53MutationsByIds |
soaplabwsdl |
Get tp53 gene mutations by ids from TP53 IARC database (see http://srs.o2i.it/srs71/) |
getP53MutationIdsByExon |
soaplabwsdl |
Get tp53 gene mutation ids by exon from IARC TP53 Database catalogue (see srs.o2i.it/srs71/) |
Outputs (2)
Name |
Description |
ids |
|
mutations |
|
Links (10)
Source |
Sink |
Filter_list_of_strings_extracting_match_to_a_regex:filteredlist |
getP53MutationsByIds:id |
Split_string_into_string_list_by_regular_expression:split |
Filter_list_of_strings_extracting_match_to_a_regex:stringlist |
exon |
getP53MutationIdsByExon:exon |
id_position:value |
Filter_list_of_strings_extracting_match_to_a_regex:group |
lib |
getP53MutationIdsByExon:libs |
getP53MutationIdsByExon:result |
Split_string_into_string_list_by_regular_expression:string |
Split_string_into_string_list_by_regular_expression:split |
ids |
getP53MutationsByIds:result |
mutations |
regex_entry_list_separator:value |
Split_string_into_string_list_by_regular_expression:regex |
regex_id_separator:value |
Filter_list_of_strings_extracting_match_to_a_regex:regex |
Uploader
License
All versions of this Workflow are
licensed under:
Version 1
(of 1)
Credits (1)
(People/Groups)
Attributions (0)
(Workflows/Files)
None
Shared with Groups (0)
None
Featured In Packs (0)
None
Log in to add to one of your Packs
Attributed By (0)
(Workflows/Files)
None
Favourited By (0)
No one
Statistics
Other workflows that use similar services
(0)
There are no workflows in myExperiment that use similar services to this Workflow.
Comments (0)
No comments yet
Log in to make a comment