This workflow takes the exon and the TP53 somatic mutation database as input and retrieve the full TP53 somatic mutation description(s) by first retrieving the TP53 somatic mutation database unique IDs associated with the input (done via a call to the getP53MutationIdsByExon web service) and then using IDs for retrieving the full TP53 somatic mutations descriptions (done via a call to the getP53MutationsByIds web service).
Special requirements on input data are:
- The exon range of numbers is 2-11,
- when specifying more than one exon, they must be in a unique input string but on distinct text lines
org.embl.ebi.escience.scuflworkers.java.RegularExpressionStringList
org.embl.ebi.escience.scuflworkers.java.SplitByRegex
\n
2
([A-Z0-9]*:)([0-9]*)
Get tp53 gene mutations by ids from TP53 IARC database (see http://srs.o2i.it/srs71/)
http://bioinformatics.istge.it:8080/axis/services/o2i.getP53MutationsByIds
Get tp53 gene mutation ids by exon from IARC TP53 Database catalogue (see srs.o2i.it/srs71/)
http://bioinformatics.istge.it:8080/axis/services/o2i.getP53MutationIdsByExon