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Adam Woznica

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Input data and background knowledge used in the KUP ...

Created: 2011-05-25 16:39:48

Credits: Adam Woznica

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Compressed RM repository directory containing input data and background knowledge used in the KUP data mining challenge (http://tunedit.org/challenge/ON)

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Adam Woznica

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Plots fibrosis data (R script)

Created: 2011-05-23 13:02:34 | Last updated: 2011-05-24 20:27:58

Credits: Adam Woznica

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Plots a (modified) heatmap of the fibrosis gene data describing different genes used in various studies on fibrosis. The input dataset is prepared in the "prepare-fibrosis-data" RM workflow. Possible values in the input data are: 1 (a gene is Up regulated), -1 (Down regulated), 0 (Unmodified) and -2 (missing value). It requires the "gplots" R package.

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Adam Woznica

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Plots an attribute similarity matrix on gene data (R...

Created: 2011-05-23 13:01:44 | Last updated: 2011-05-25 15:46:10

Credits: Adam Woznica

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Plots an attribute similarity matrix computed from the provided data frame. The input dataset is prepared in the "prepare-gene-correlation" RM workflow and is assumed to contain genes as rows, and gene functions and locations as columns. In the visualized matrix columns correspond to gene locations and rows correspond to gene functions. The supported types of attribute similarities are: the covariance, the Hamming distance, and a modified Hamming distance that focuses on columns wit...

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Adam Woznica

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R library

Created: 2011-05-23 12:50:59 | Last updated: 2011-05-24 20:27:32

Credits: Adam Woznica

License: Creative Commons Attribution-Share Alike 3.0 Unported License

R library used by other R scripts.

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Adam Woznica

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RM repository directory containing data

Created: 2011-05-23 12:49:04 | Last updated: 2011-05-24 20:26:36

Credits: Adam Woznica

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Compressed directory from RM repository containing data used by the different workflows and R scirpts.

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Adam Woznica

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A sample visualization produced by the R functions f...

Created: 2011-05-23 13:17:49 | Last updated: 2011-05-24 20:30:25

Credits: Adam Woznica

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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Adam Woznica

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A sample visualization produced by the R functions f...

Created: 2011-05-23 13:17:10 | Last updated: 2011-05-24 20:30:47

Credits: Adam Woznica

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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