mdabr's Workflows

concatTwoStrings (1)

• Download

for tests of TavernaServer

Created: 2013-10-10 | Last updated: 2013-10-10

Credits: mdabr

loadData (1)

• Download

Permits loading data to Nencki Genomics Database.

Created: 2013-10-08

Credits: mdabr

showDatasetsGenomic (1)

• Download

Shows all the datasets available in the Nencki Genomics Database (www.nencki-genomics.org). Click 'Use examples' to see all the datasets, separated into datasets of TFBS motifs, and all the remaining datasets (areas), the latter including data from Ensembl funcgen and (thus) Encode. Publication doi: 10.1093/database/bat069

Created: 2013-10-07

Credits: mdabr

plotGenomic (1)

• Download

This workflow returns a graphical representation of selected Nencki Genomics Database (www.nencki-genomics.org) content in the ± 10 kb flank of the transcription start site of a chosen gene. More precisely, it returns instances of selected area types, and instances of selected motif types that intersect any of the returned area instances. The results are returned as three files: a pdf file with the plot, and two tab-separated files with the details of areas and motifs shown in the plot. P...

Created: 2013-10-07

Credits: mdabr