Duncan Hull's Workflows

Genome annotation pipeline demonstrator wo... (2)

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Part of a workflow by Hannah Tipney, adapted by Duncan Hull using GenScan, RepeatMasker and BLAST. http://dx.doi.org/10.1093/nar/gkl320

Created: 2007-10-03

EBI InterProScan (2)

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EBI InterProScan. Stop fannying around with BLAST and use InterProScan instead.

Created: 2007-10-03

DOI2PMID (2)

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Converts Digital Object Identifiers into their corresponding PubMed identifiers, if they exist.

Created: 2007-10-03

getFragWithClosure (2)

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Bit of a hack, but it works now, adds trailing "%90" to the output.

Created: 2007-10-03

getFragWithClosure (2)

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getFragment with closure "workflow", actually just one service, but need example inputs for smiles string, group and closure parameters.

Created: 2007-10-03

getFragWithClosure2 (2)

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with parameters

Created: 2007-10-03

getOntologyTerm (1)

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This service takes a MIRIAM compliant URI and looks up all the synonyms for that URI using ChEBI and other services. Service developed and maintained by Neil Swainston at the MCISB in Manchester.

Created: 2009-06-09 | Last updated: 2009-06-09

Credits: Duncan Hull

getSynonymsFromSBML (1)

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This service takes an SBML file (for example from the Biomodels database) and extracts synonyms for each of the SBML species in the file, using ChEBI. Service is written and maintained by Neil Swainston at the MCISB.

Created: 2009-06-09 | Last updated: 2009-06-09

Credits: Duncan Hull

GetReactions (1)

This workflow takes an arbitrary SBML model from the BioModels database and returns a list of reactions contained in that model.

Created: 2009-05-19 | Last updated: 2009-05-19

Credits: Duncan Hull

ChEBI-get_synonyms (1)

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No description

Created: 2007-11-14

Credits: Duncan Hull