myExperiment - Workflows

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BioExtract Server

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Kalpana

Gene function prediction in Macaca Fasciculus (1)

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This workflow searches for ORF regions in a specific gene (TOM1L1 in Macaca fasciculus testis) to predict candidate protein coding regions. Results from blastp are used to find which frames are closest to existing proteins in other species. rpsblast is used to predict the domains and the protein families that these sequences may belong to. This is used to predict the function of the protein.

Created: 2011-03-27 | Last updated: 2011-03-27

Credits: Kalpana

BioExtract Server

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Kalpana

Blastn-ClustalW (1)

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This workflow retrieves a sequence from NCBI Core Nucleotide, searches for similar sequences with Blastn, then feeds a set of Blastn results into the multiple alignment tool, ClustalW.

Created: 2010-10-27 | Last updated: 2010-10-27

Credits: Kalpana

BioExtract Server

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Kalpana

Blastn-ClustalW (1)

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This workflow retrieves a sequence from NCBI Core Nucleotide, searches for similar sequences with Blastn, then feeds a set of Blastn results into the multiple alignment tool, ClustalW.

Created: 2010-09-29

Credits: Kalpana

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Kalpana's Workflows