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Kristina Hettne

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Functional annotation of SNPs using next-generation ...

Created: 2012-06-26 10:41:38 | Last updated: 2015-09-01 14:31:18

This pack implements the concept profile matching pipeline in the knowledge discovery tool Anni (http://biosemantics.org/anni), and adapts it to interpret the top SNPs from a GWAS. The underlying literature and concept profile databases are the same as the for the current version of Anni (2.1). The pack consists of three main workflows (http://www.myexperiment.org/workflows/2999, http://www.myexperiment.org/workflows/2973, http://www.myexperiment.org/workflows/2972). Workflow 2999 returns a ...

12 items in this pack

Comments: 0 | Viewed: 198 times | Downloaded: 28 times

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concept
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ensembl
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evidence
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gene
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GO
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literature
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ontology
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profile
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snp

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Kristina Hettne

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Concept profile analysis using Anni Web services

Created: 2013-02-06 19:11:26 | Last updated: 2014-07-15 08:17:33

Concept profile analysis is a knowledge discovery method that proved successful in generating hypotheses about molecular mechanisms explaining the results from genotype-phenotype studies. This technology has been implemented in the Anni standalone application (http://biosemantics.org/anni). This pack contains a number of workflows that can be used together to configure and run typical user pipelines from Anni through the Anni Web services (http://www.biocatalogue.org/services/3559).

11 items in this pack

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Kristina Hettne

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Pathway analysis with WikiPathways

Created: 2015-09-01 14:24:28 | Last updated: 2015-11-16 09:58:55

This pack contains workflows needed to perform pathway overrepresentation analysis based on the WikiPathways Web services.

8 items in this pack

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Kristina Hettne

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Genotype-phenotype knowledge discovery using the Con...

Created: 2015-04-07 18:38:40 | Last updated: 2015-04-07 18:44:49

This pack compiles workflows and workflow results for the generation of literature-generated fingerprints of human phenotypes.

5 items in this pack

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