myExperiment - Workflows

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Taverna 2

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Simon Jupp

miRNA GFF to entrez gene (1)

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This workflow reads a GFF file of miRNA cooridinates and uses BioMart to search human ensemble genes for the gene that codes for the miRNA. The workflow returns a list of miRNAid, chromosome, start, stop, strand, entrez gene id, gene name, gene strand. Example input file here: ftp://mirbase.org/pub/mirbase/CURRENT/genomes/hsa.gff

Created: 2011-01-26 | Last updated: 2012-01-11

Taverna 1

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Simon Jupp

dreseden-term-extraction1 (1)

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Created: 2007-11-22

Credits: Simon Jupp

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Simon Jupp's Workflows