myExperiment

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Kristina Hettne

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Functional annotation of SNPs using next-generation ...

Created: 2012-06-26 10:41:38 | Last updated: 2015-09-01 14:31:18

This pack implements the concept profile matching pipeline in the knowledge discovery tool Anni (http://biosemantics.org/anni), and adapts it to interpret the top SNPs from a GWAS. The underlying literature and concept profile databases are the same as the for the current version of Anni (2.1). The pack consists of three main workflows (http://www.myexperiment.org/workflows/2999, http://www.myexperiment.org/workflows/2973, http://www.myexperiment.org/workflows/2972). Workflow 2999 returns a ...

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concept
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ensembl
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evidence
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gene
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GO
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literature
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ontology
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profile
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snp

Creator

Jose Enrique Ruiz

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AstroTaverna Starter Pack

Created: 2013-04-12 16:10:31 | Last updated: 2013-11-27 16:54:39

This is a set of small snippets using AstroTaverna plugin, developed in the Wf4Ever project. The purpose of this pack is to make the design and development of astronomy Virtual Observatory workflows easier, learning by the example.AstroTaverna may be installed on Taverna 2.4 Workbenchhttp://wf4ever.github.io/astrotaverna/

29 items in this pack

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Creator

Kristina Hettne

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Concept profile analysis using Anni Web services

Created: 2013-02-06 19:11:26 | Last updated: 2014-07-15 08:17:33

Concept profile analysis is a knowledge discovery method that proved successful in generating hypotheses about molecular mechanisms explaining the results from genotype-phenotype studies. This technology has been implemented in the Anni standalone application (http://biosemantics.org/anni). This pack contains a number of workflows that can be used together to configure and run typical user pipelines from Anni through the Anni Web services (http://www.biocatalogue.org/services/3559).

11 items in this pack

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Creator

Marco Roos

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Demo pack for wf4ever

Created: 2013-01-30 13:53:40 | Last updated: 2013-01-30 14:08:08

This pack is a mirror of the Demo pack for the wf4ever review Demo. You should not be using any of this for real work.

6 items in this pack

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wf4ever

Creator

Jose Enrique Ruiz

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Galaxies Sample Selection Research Object

Created: 2013-01-05 16:51:56 | Last updated: 2013-01-05 16:59:16

In order to understand the evolution of galaxies, detailed analysis of images plays a key role. During the last years telescopes working at different wavelengths have been imaging the whole sky. One example of this is the Sloan Digital Sky Survey. The generated images provides a wealth of information, publicly available, and hence allowing them to be used by any interested group in the study of their own samples of objects or generation of new samples. The two main processing of the ima...

4 items in this pack

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Creator

Jose Enrique Ruiz

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Luminosity Profiles Research Object

Created: 2013-01-05 16:34:46 | Last updated: 2013-01-05 16:58:18

In order to understand the evolution of galaxies, detailed analysis of images plays a key role. During the last years telescopes working at different wavelengths have been imaging the whole sky. One example of this is the Sloan Digital Sky Survey. The generated images provides a wealth of information, publicly available, and hence allowing them to be used by any interested group in the study of their own samples of objects or generation of new samples. The two main processing of the images ge...

7 items in this pack

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Creator

Jose Enrique Ruiz

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Propagation of properties extracted from the HyperLE...

Created: 2011-11-24 19:12:05 | Last updated: 2011-12-01 22:13:34

The scientific experiment represented by this research object pertains to the multi-wavelength study for a sample of the most isolated galaxies in the local universe. This study characterizes each galaxy of this sample through both the measurement of basic astrophysical properties: - The equatorial coordinates in J2000 epoch - The velocities in km/s (v) - The dust extinction coefficient (ag) - The axis ratio of the isophote 25 mag/arcsec2 (logr25) - The apparent total B magnitude (BT) ...

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Creator

David De Roure

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Presentation - myExperiment Architecture

Created: 2011-02-06 14:43:39 | Last updated: 2011-02-06 18:32:37

Title: myExperiment Architecture Speaker: David De Roure Event: Wf4Ever Architecture Task Force First Face to Face Meeting Event URL: http://www.wf4ever-project.org/ Location: Oxford UK Date: Monday February 7, 2011 Formats: .ppt

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